Rh4AG373800

Domain of unknown function (DUF383)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0013408
Physical Location & Seq
Reverse (-)
68137313 .. 68141185
3873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG373800.1

Sequence Viewer

Length: 735 bp
ATGGTCCAAGATCACATTTTAGTATTCTGGACAAAAATTACAAAAAACAGAACTTGTACCTCTTTAGAAAATTCTGATGCATCTCCAAGTTGTTCTTTTTGCAGTCATTCAAATATTGGCATTTGTATATCACAGTTATCACTATATTGCTCTGATTTTTTTCCCCCACATGTATCAGAAGATCCATTTGAACATGTTGGGTCTATACTTGTGAACATCTCAAAGAAAGAAGCAGGCAGGAAACTTTTGCTGGACCCTAAGCGAGGACTTCTGAAGCAGATTATTAGACAGTATGACTCTTCTAGCCCGTTGAGAAGGAAAGGGGTTTCTGGAACTATTCGTAACTGTTGTTTTGAAGCTGCGAGCGAGCTTCAGAATTTGCTTTTGATTTCAGAGTTTCTCTGGCCAGCTCTGCTTCTGCCTGTTGCCGGTAACAAGATTTACAGTCAGCAAGATAGATCAAAAATGCCACTTGAGCTTAGTAGTGCTCTCTCAATTGAGCGTGAACCAGTTGATGATCCTGAAATTCGTGCTGAAGTCCTGGAGGCAATATACATGATCACATTACAGGAGGCAGGTCTAAGAGCCTTTTGGTCTGTCAATGGACCAAGAATAATACAAGTGGGTTATGAAGATGAGGAAGATCCTAAAGTAATGGAAGCATATGAGCAACTCGGCTCCTTGTTGATTAATAGCAGTGGGACAGAGGAATCAGCAATTGAGACATCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF383 DUF384

Protein Analysis

244

Amino Acids

27.25

Weight (kDa)

4.97

Isoelectric Point (pI)

64.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF383 PF04063 60 - 177 5.3e-27 Domain of unknown function (DUF383)
DUF384 PF04064 183 - 235 5.8e-11 Domain of unknown function (DUF384)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013408)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14300 AT1G14300
fragaria_vesca FvH4_4g31470 FvH4_4g31470
malus_domestica MD16G1074200.v1.1
pyrus_communis pycom16g06420
rosa_chinensis RchiOBHm_Chr4g0439961
rosa_laevigata RLG00000006220
rosa_multiflora Rmu_sc0006000.1_g000004 Rmu_sc0023432.1_g000002
rosa_roxburghii Rroxscaffold_5G00380910
rosa_rugosa Rorug04G0322700
rosa_samantha Rh4AG373800 Rh4BG386100 Rh4CG377200 Rh4CG400600 Rh4DG380400
rosa_wichuraiana Rw4G031970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 566
AclWI GGATC 3 cut(s) 176, 512, 638
AcoI YGGCCR 1 cut(s) 404
AcsI RAATTY 3 cut(s) 70, 376, 525
AcuI CTGAAG 3 cut(s) 293, 356, 555
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 2 cut(s) 263, 428
AflIII ACRYGT 2 cut(s) 169, 193
AgsI TTSAA 3 cut(s) 111, 191, 356
AjnI CCWGG 1 cut(s) 540
AluBI AGCT 4 cut(s) 359, 370, 410, 478
AluI AGCT 4 cut(s) 359, 370, 410, 478
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 1 cut(s) 716
AlwI GGATC 3 cut(s) 176, 512, 638
AoxI GGCC 1 cut(s) 404
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 3 cut(s) 70, 376, 525
AseI ATTAAT 1 cut(s) 690
AspS9I GGNCC 3 cut(s) 4, 253, 605
AvaII GGWCC 3 cut(s) 4, 253, 605
BalI TGGCCA 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 490
BbvI GCAGC 1 cut(s) 346
BciT130I CCWGG 1 cut(s) 542
BclI TGATCA 1 cut(s) 558
BcoDI GTCTC 1 cut(s) 716
BfaI CTAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 566
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 542
Bme18I GGWCC 3 cut(s) 4, 253, 605
BmgT120I GGNCC 3 cut(s) 4, 253, 605
BmiI GGNNCC 2 cut(s) 255, 679
BmrFI CCNGG 1 cut(s) 542
BmsI GCATC 2 cut(s) 67, 89
BpmI CTGGAG 1 cut(s) 563
Bpu10I CCTNAGC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 494
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 428
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 509
BseBI CCWGG 1 cut(s) 542
BseLI CCNNNNNNNGG 2 cut(s) 263, 428
BseNI ACTGG 1 cut(s) 509
BseXI GCAGC 1 cut(s) 346
BshFI GGCC 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 490
BsiSI CCGG 1 cut(s) 429
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 2 cut(s) 263, 428
BsmAI GTCTC 1 cut(s) 716
BsmFI GGGAC 1 cut(s) 715
BsnI GGCC 1 cut(s) 406
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 6 cut(s) 10, 181, 458, 517, 558, 643
BspANI GGCC 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 255, 679
BspMI ACCTGC 1 cut(s) 566
BspPI GGATC 3 cut(s) 176, 512, 638
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 1 cut(s) 509
BssAI RCCGGY 1 cut(s) 428
BssMI GATC 6 cut(s) 10, 181, 458, 517, 558, 643
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 4 cut(s) 135, 291, 347, 446
Bst6I CTCTTC 1 cut(s) 304
BstC8I GCNNGC 4 cut(s) 235, 364, 368, 408
BstDEI CTNAG 3 cut(s) 258, 479, 581
BstENI CCTNNNNNAGG 1 cut(s) 261
BstKTI GATC 6 cut(s) 13, 184, 461, 520, 561, 646
BstMAI GTCTC 1 cut(s) 716
BstMBI GATC 6 cut(s) 10, 181, 458, 517, 558, 643
BstMWI GCNNNNNNNGC 2 cut(s) 412, 475
BstNI CCWGG 1 cut(s) 542
BstNSI RCATGY 2 cut(s) 173, 197
BstSCI CCNGG 1 cut(s) 540
BstV1I GCAGC 1 cut(s) 346
BstX2I RGATCY 2 cut(s) 181, 643
BstYI RGATCY 2 cut(s) 181, 643
BsuRI GGCC 1 cut(s) 406
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 1 cut(s) 703
BveI ACCTGC 1 cut(s) 566
Cac8I GCNNGC 4 cut(s) 235, 364, 368, 408
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 3 cut(s) 4, 253, 605
Csp6I GTAC 1 cut(s) 57
CviAII CATG 3 cut(s) 170, 194, 556
CviJI RGCY 8 cut(s) 306, 359, 370, 406, 410, 478, 587, 678
CviKI_1 RGCY 8 cut(s) 306, 359, 370, 406, 410, 478, 587, 678
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 3 cut(s) 258, 479, 581
DpnI GATC 6 cut(s) 12, 183, 460, 519, 560, 645
DpnII GATC 6 cut(s) 10, 181, 458, 517, 558, 643
EaeI YGGCCR 1 cut(s) 404
Eam1104I CTCTTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 304
Eco47I GGWCC 3 cut(s) 4, 253, 605
Eco57I CTGAAG 3 cut(s) 293, 356, 555
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 540
EcoT22I ATGCAT 1 cut(s) 82
FaeI CATG 3 cut(s) 173, 197, 559
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FaqI GGGAC 1 cut(s) 715
FatI CATG 3 cut(s) 169, 193, 555
FauNDI CATATG 1 cut(s) 664
FbaI TGATCA 1 cut(s) 558
Fnu4HI GCNGC 1 cut(s) 360
Fsp4HI GCNGC 1 cut(s) 360
FspBI CTAG 1 cut(s) 303
GluI GCNGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 563
HaeIII GGCC 1 cut(s) 406
HapII CCGG 1 cut(s) 429
Hin1II CATG 3 cut(s) 173, 197, 559
HinfI GANTC 2 cut(s) 296, 710
HpaII CCGG 1 cut(s) 429
Hpy166II GTNNAC 2 cut(s) 214, 506
Hpy188I TCNGA 6 cut(s) 76, 154, 178, 273, 375, 394
Hpy188III TCNNGA 3 cut(s) 28, 330, 521
Hpy8I GTNNAC 2 cut(s) 214, 506
HpyAV CCTTC 1 cut(s) 309
HpyCH4III ACNGT 4 cut(s) 135, 291, 347, 446
HpyCH4V TGCA 2 cut(s) 80, 102
HpyF10VI GCNNNNNNNGC 2 cut(s) 412, 475
HpyF3I CTNAG 3 cut(s) 258, 479, 581
Hsp92II CATG 3 cut(s) 173, 197, 559
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 6 cut(s) 10, 181, 458, 517, 558, 643
LmnI GCTCC 1 cut(s) 683
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 2 cut(s) 67, 89
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 341, 431
MalI GATC 6 cut(s) 12, 183, 460, 519, 560, 645
MboI GATC 6 cut(s) 10, 181, 458, 517, 558, 643
MboII GAAGA 4 cut(s) 191, 291, 644, 653
MfeI CAATTG 2 cut(s) 495, 717
MflI RGATCY 2 cut(s) 181, 643
MhlI GDGCHC 1 cut(s) 490
MlsI TGGCCA 1 cut(s) 406
MluCI AATT 7 cut(s) 36, 70, 376, 495, 525, 717, 730
MluNI TGGCCA 1 cut(s) 406
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 6 cut(s) 70, 257, 538, 565, 631, 700
Mox20I TGGCCA 1 cut(s) 406
Mph1103I ATGCAT 1 cut(s) 82
MscI TGGCCA 1 cut(s) 406
MseI TTAA 1 cut(s) 690
Msp20I TGGCCA 1 cut(s) 406
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 542
MunI CAATTG 2 cut(s) 495, 717
MvaI CCWGG 1 cut(s) 542
MwoI GCNNNNNNNGC 2 cut(s) 412, 475
NdeI CATATG 1 cut(s) 664
NdeII GATC 6 cut(s) 10, 181, 458, 517, 558, 643
NlaIII CATG 3 cut(s) 173, 197, 559
NlaIV GGNNCC 2 cut(s) 255, 679
NmeAIII GCCGAG 1 cut(s) 654
NsiI ATGCAT 1 cut(s) 82
NspI RCATGY 2 cut(s) 173, 197
PciI ACATGT 2 cut(s) 169, 193
PfeI GAWTC 1 cut(s) 710
PfoI TCCNGGA 1 cut(s) 540
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PscI ACATGT 2 cut(s) 169, 193
PshBI ATTAAT 1 cut(s) 690
Psp6I CCWGG 1 cut(s) 540
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 2 cut(s) 255, 679
PspPI GGNCC 3 cut(s) 4, 253, 605
PsuI RGATCY 2 cut(s) 181, 643
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 690
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 6 cut(s) 10, 181, 458, 517, 558, 643
Sau96I GGNCC 3 cut(s) 4, 253, 605
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 1 cut(s) 490
SetI ASST 6 cut(s) 62, 361, 372, 412, 480, 580
SfaNI GCATC 2 cut(s) 67, 89
SinI GGWCC 3 cut(s) 4, 253, 605
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 7 cut(s) 36, 70, 376, 495, 525, 717, 730
SspI AATATT 1 cut(s) 115
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 540
TaaI ACNGT 4 cut(s) 135, 291, 347, 446
TasI AATT 7 cut(s) 36, 70, 376, 495, 525, 717, 730
TfiI GAWTC 1 cut(s) 710
Tru1I TTAA 1 cut(s) 690
Tru9I TTAA 1 cut(s) 690
TscAI CASTG 1 cut(s) 703
TseI GCWGC 1 cut(s) 359
TspDTI ATGAA 1 cut(s) 645
TspRI CASTG 1 cut(s) 703
VpaK11BI GGWCC 3 cut(s) 4, 253, 605
VspI ATTAAT 1 cut(s) 690
XagI CCTNNNNNAGG 1 cut(s) 261
XapI RAATTY 3 cut(s) 70, 376, 525
XceI RCATGY 2 cut(s) 173, 197
XspI CTAG 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.