Rmu_sc0023432.1_g000002

Domain of unknown function (DUF383)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023432.1
OG0013408
Physical Location & Seq
Reverse (-)
4912 .. 7126
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023432.1_g000002.1.cds

Sequence Viewer

Length: 582 bp
atgcaagggctcaatgttatgaagcttgtgagatcattttgtagatcctcctccagtgaagatagcgaagatccatttgaacatgttggctctatacttgtgaacatctcaaagaaagaagcaggcaggaaacttttactggaccctaagcgaggacttctgaagcagattattagacagtatgactcttctagcccgttgagaaggaaaggggtttctggaactattcgtaactgttgttttgaagctgtgagcgagctgcagaatttactttttgcttatacctgttgccgtcagcaagatagatcaaaaatgccacttgagcttagtagtgctctctcaattgagcgtgaaccagttgatgatcctgaaattcgtgctgaagtcctggaggcaatatacatgatcacattacaggaggcaggtctaagagccttttggtctgtcaatggaccaagaataatacaagtgggttatgaagatgaggaagatcctaaagtaatggaagcatatgagcaactcggctccttgttgattaatagcagtgggacagaggaatcagcaattgagacatcaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF383 DUF384

Protein Analysis

193

Amino Acids

21.67

Weight (kDa)

4.95

Isoelectric Point (pI)

68.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013408)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14300 AT1G14300
fragaria_vesca FvH4_4g31470 FvH4_4g31470
malus_domestica MD16G1074200.v1.1
pyrus_communis pycom16g06420
rosa_chinensis RchiOBHm_Chr4g0439961
rosa_laevigata RLG00000006220
rosa_multiflora Rmu_sc0006000.1_g000004 Rmu_sc0023432.1_g000002
rosa_roxburghii Rroxscaffold_5G00380910
rosa_rugosa Rorug04G0322700
rosa_samantha Rh4AG373800 Rh4BG386100 Rh4CG377200 Rh4CG400600 Rh4DG380400
rosa_wichuraiana Rw4G031970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 413
AclWI GGATC 4 cut(s) 39, 65, 359, 485
AcsI RAATTY 2 cut(s) 265, 372
AcuI CTGAAG 2 cut(s) 182, 402
AfiI CCNNNNNNNGG 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 2 cut(s) 80, 245
AjnI CCWGG 1 cut(s) 387
AluBI AGCT 4 cut(s) 25, 248, 259, 325
AluI AGCT 4 cut(s) 25, 248, 259, 325
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 1 cut(s) 563
AlwI GGATC 4 cut(s) 39, 65, 359, 485
ApeKI GCWGC 1 cut(s) 259
ApoI RAATTY 2 cut(s) 265, 372
AseI ATTAAT 1 cut(s) 537
AspS9I GGNCC 2 cut(s) 142, 452
AvaII GGWCC 2 cut(s) 142, 452
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 246
BceAI ACGGC 1 cut(s) 276
BciT130I CCWGG 1 cut(s) 389
BclI TGATCA 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 563
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 413
BisI GCNGC 1 cut(s) 260
BlsI GCNGC 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 389
Bme18I GGWCC 2 cut(s) 142, 452
BmgT120I GGNCC 2 cut(s) 142, 452
BmiI GGNNCC 2 cut(s) 144, 526
BmrFI CCNGG 1 cut(s) 389
BpmI CTGGAG 2 cut(s) 37, 410
Bpu10I CCTNAGC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 341
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 3 cut(s) 54, 144, 356
BseBI CCWGG 1 cut(s) 389
BseLI CCNNNNNNNGG 1 cut(s) 152
BseNI ACTGG 3 cut(s) 54, 144, 356
BseRI GAGGAG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 337
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 563
BsmFI GGGAC 1 cut(s) 562
Bsp1286I GDGCHC 2 cut(s) 12, 337
Bsp143I GATC 7 cut(s) 32, 44, 70, 305, 364, 405, 490
BspLI GGNNCC 2 cut(s) 144, 526
BspMAI CTGCAG 1 cut(s) 264
BspMI ACCTGC 1 cut(s) 413
BspPI GGATC 4 cut(s) 39, 65, 359, 485
BsrI ACTGG 3 cut(s) 54, 144, 356
BssMI GATC 7 cut(s) 32, 44, 70, 305, 364, 405, 490
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 2 cut(s) 180, 236
Bst6I CTCTTC 1 cut(s) 193
BstC8I GCNNGC 2 cut(s) 124, 257
BstDEI CTNAG 3 cut(s) 147, 326, 428
BstENI CCTNNNNNAGG 1 cut(s) 150
BstKTI GATC 7 cut(s) 35, 47, 73, 308, 367, 408, 493
BstMAI GTCTC 1 cut(s) 563
BstMBI GATC 7 cut(s) 32, 44, 70, 305, 364, 405, 490
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 387
BstSFI CTRYAG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 246
BstX2I RGATCY 3 cut(s) 44, 70, 490
BstYI RGATCY 3 cut(s) 44, 70, 490
BtsI GCAGTG 1 cut(s) 550
BtsIMutI CAGTG 2 cut(s) 61, 550
BveI ACCTGC 1 cut(s) 413
Cac8I GCNNGC 2 cut(s) 124, 257
Cfr13I GGNCC 2 cut(s) 142, 452
CviAII CATG 2 cut(s) 83, 403
CviJI RGCY 9 cut(s) 10, 25, 90, 195, 248, 259, 325, 434, 525
CviKI_1 RGCY 9 cut(s) 10, 25, 90, 195, 248, 259, 325, 434, 525
DdeI CTNAG 3 cut(s) 147, 326, 428
DpnI GATC 7 cut(s) 34, 46, 72, 307, 366, 407, 492
DpnII GATC 7 cut(s) 32, 44, 70, 305, 364, 405, 490
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 2 cut(s) 142, 452
Eco57I CTGAAG 2 cut(s) 182, 402
EcoNI CCTNNNNNAGG 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 387
EcoT38I GRGCYC 1 cut(s) 12
FaeI CATG 2 cut(s) 86, 406
FaqI GGGAC 1 cut(s) 562
FatI CATG 2 cut(s) 82, 402
FauNDI CATATG 1 cut(s) 511
FbaI TGATCA 1 cut(s) 405
Fnu4HI GCNGC 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 260
FspBI CTAG 1 cut(s) 192
GluI GCNGC 1 cut(s) 260
GsuI CTGGAG 2 cut(s) 37, 410
Hin1II CATG 2 cut(s) 86, 406
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 2 cut(s) 185, 557
Hpy166II GTNNAC 2 cut(s) 103, 353
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 2 cut(s) 219, 368
Hpy8I GTNNAC 2 cut(s) 103, 353
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 2 cut(s) 180, 236
HpyCH4V TGCA 2 cut(s) 4, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 3 cut(s) 147, 326, 428
Hsp92II CATG 2 cut(s) 86, 406
Ksp22I TGATCA 1 cut(s) 405
Kzo9I GATC 7 cut(s) 32, 44, 70, 305, 364, 405, 490
LmnI GCTCC 1 cut(s) 530
Lsp1109I GCAGC 1 cut(s) 246
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 230
MalI GATC 7 cut(s) 34, 46, 72, 307, 366, 407, 492
MboI GATC 7 cut(s) 32, 44, 70, 305, 364, 405, 490
MboII GAAGA 5 cut(s) 71, 80, 180, 491, 500
MfeI CAATTG 2 cut(s) 342, 564
MflI RGATCY 3 cut(s) 44, 70, 490
MhlI GDGCHC 2 cut(s) 12, 337
MluCI AATT 5 cut(s) 265, 342, 372, 564, 577
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 7 cut(s) 58, 61, 146, 385, 412, 478, 547
MseI TTAA 1 cut(s) 537
MspR9I CCNGG 1 cut(s) 389
MunI CAATTG 2 cut(s) 342, 564
MvaI CCWGG 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeI CATATG 1 cut(s) 511
NdeII GATC 7 cut(s) 32, 44, 70, 305, 364, 405, 490
NlaIII CATG 2 cut(s) 86, 406
NlaIV GGNNCC 2 cut(s) 144, 526
NmeAIII GCCGAG 1 cut(s) 501
NspI RCATGY 1 cut(s) 86
PciI ACATGT 1 cut(s) 82
PfeI GAWTC 1 cut(s) 557
PfoI TCCNGGA 1 cut(s) 387
PkrI GCNGC 1 cut(s) 261
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
PscI ACATGT 1 cut(s) 82
PshBI ATTAAT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 387
PspGI CCWGG 1 cut(s) 387
PspN4I GGNNCC 2 cut(s) 144, 526
PspPI GGNCC 2 cut(s) 142, 452
PstI CTGCAG 1 cut(s) 264
PsuI RGATCY 3 cut(s) 44, 70, 490
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 1 cut(s) 260
Sau3AI GATC 7 cut(s) 32, 44, 70, 305, 364, 405, 490
Sau96I GGNCC 2 cut(s) 142, 452
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 389
SduI GDGCHC 2 cut(s) 12, 337
SetI ASST 6 cut(s) 27, 250, 261, 287, 327, 427
SfcI CTRYAG 1 cut(s) 260
SinI GGWCC 2 cut(s) 142, 452
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 5 cut(s) 265, 342, 372, 564, 577
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 387
TaaI ACNGT 2 cut(s) 180, 236
TasI AATT 5 cut(s) 265, 342, 372, 564, 577
TfiI GAWTC 1 cut(s) 557
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 2 cut(s) 61, 550
TseI GCWGC 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 35, 492
TspRI CASTG 2 cut(s) 61, 550
VpaK11BI GGWCC 2 cut(s) 142, 452
VspI ATTAAT 1 cut(s) 537
XagI CCTNNNNNAGG 1 cut(s) 150
XapI RAATTY 2 cut(s) 265, 372
XceI RCATGY 1 cut(s) 86
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.