FvH4_4g32391

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015610
Physical Location & Seq
Forward (+)
31060730 .. 31062017
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32391.t1

Sequence Viewer

Length: 519 bp
ATGGAGGCCGGGTCGGCTTCGTATTACAGTGTTCTGGGAGTTGATTCAGATTCTTCTACGGAAGAAATCAAGCGCGCTTATCGGAAACTCGCCATGCGGTATCATCCAGACCGGTGGACAAGAAGCCCTTCTTTGCTGGGGGAAGCCAAGCGAAGGTTCCAGGAGATTCAAGAAGCATATTCTGTGTTATCGGATCAGAGGAAGCGAACAATGTACGACGCAGGGTTGTACGATCCCGATGAGGAAGAAGATGAGGGGCTGTGTGATTTTGTGCAAGAATTGGTGTCTTTGATGGCGGAATCGAGACGAGAGCAGAAGAGTTATAGCATGGAGGATTTGCAGGCAATGTTCATGGAGATGGCTAAAGGATTCGAGTCTTCTTTTGGGTACTGTGGACCTAATTTTGAGCAAGCTCATCAATCTGGGTGCGCAAAGAGGACGCGTCTGGAATCTAAACCAGGCATCGACACAGGCTCGACTATGGGGATGTATGGAGGACGAGGATTCTTTTCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

173

Amino Acids

19.62

Weight (kDa)

4.99

Isoelectric Point (pI)

61.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 7 - 73 3.7e-25 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015610)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32391
malus_domestica MD13G1025600.v1.1 MD16G1028400.v1.1
prunus_persica Prupe.1G324300_v2.0.a1
pyrus_communis pycom13g02430 pycom16g02430
rosa_chinensis RchiOBHm_Chr4g0441231
rosa_laevigata RLG00000006109
rosa_multiflora Rmu_sc0032990.1_g000001
rosa_roxburghii Rroxscaffold_5G00382140
rosa_rugosa Rorug04G0331700
rosa_samantha Rh4AG383500 Rh4BG397600 Rh4CG412800 Rh4DG390300
rosa_wichuraiana Rw4G033090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 430
AccII CGCG 2 cut(s) 75, 442
AciI CCGC 2 cut(s) 97, 296
AclWI GGATC 2 cut(s) 201, 227
AfaI GTAC 3 cut(s) 215, 230, 389
AfiI CCNNNNNNNGG 1 cut(s) 153
AflIII ACRYGT 1 cut(s) 440
AgeI ACCGGT 1 cut(s) 111
AgsI TTSAA 1 cut(s) 170
AjnI CCWGG 2 cut(s) 159, 457
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 1 cut(s) 413
AluI AGCT 1 cut(s) 413
Alw26I GTCTC 1 cut(s) 298
AlwI GGATC 2 cut(s) 201, 227
AoxI GGCC 1 cut(s) 6
AsiGI ACCGGT 1 cut(s) 111
Asp700I GAANNNNTTC 1 cut(s) 127
AspLEI GCGC 3 cut(s) 75, 77, 431
AspS9I GGNCC 1 cut(s) 395
AsuC2I CCSGG 1 cut(s) 10
AvaII GGWCC 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 369
BccI CCATC 2 cut(s) 286, 352
BciT130I CCWGG 2 cut(s) 161, 459
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 298
BglI GCCNNNNNGGC 1 cut(s) 14
Bme1390I CCNGG 3 cut(s) 10, 161, 459
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 3 cut(s) 10, 161, 459
BmsI GCATC 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 369
BpuMI CCSGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse118I RCCGGY 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 2 cut(s) 161, 459
BseGI GGATG 2 cut(s) 103, 492
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMI GCAATG 1 cut(s) 351
BsePI GCGCGC 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 136
Bsh1236I CGCG 2 cut(s) 75, 442
BshFI GGCC 1 cut(s) 8
BshTI ACCGGT 1 cut(s) 111
BsiSI CCGG 2 cut(s) 9, 112
BslI CCNNNNNNNGG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 298
BsmBI CGTCTC 1 cut(s) 298
BsnI GGCC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 193, 232
BspACI CCGC 2 cut(s) 97, 296
BspANI GGCC 1 cut(s) 8
BspFNI CGCG 2 cut(s) 75, 442
BspLI GGNNCC 1 cut(s) 158
BspPI GGATC 2 cut(s) 201, 227
BsrDI GCAATG 1 cut(s) 351
BsrFI RCCGGY 1 cut(s) 111
BssAI RCCGGY 1 cut(s) 111
BssHII GCGCGC 1 cut(s) 73
BssMI GATC 2 cut(s) 193, 232
Bst2UI CCWGG 2 cut(s) 161, 459
Bst4CI ACNGT 2 cut(s) 29, 392
Bst6I CTCTTC 1 cut(s) 311
BstC8I GCNNGC 3 cut(s) 75, 342, 411
BstF5I GGATG 2 cut(s) 103, 492
BstFNI CGCG 2 cut(s) 75, 442
BstHHI GCGC 3 cut(s) 75, 77, 431
BstKTI GATC 2 cut(s) 196, 235
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 2 cut(s) 193, 232
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 2 cut(s) 161, 459
BstSCI CCNGG 3 cut(s) 8, 159, 457
BstUI CGCG 2 cut(s) 75, 442
BstV2I GAAGAC 1 cut(s) 369
BstXI CCANNNNNNTGG 1 cut(s) 114
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 2 cut(s) 103, 492
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 3 cut(s) 75, 342, 411
CfoI GCGC 3 cut(s) 75, 77, 431
Cfr10I RCCGGY 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 395
CseI GACGC 3 cut(s) 227, 431, 448
Csp6I GTAC 3 cut(s) 214, 229, 388
CspAI ACCGGT 1 cut(s) 111
CviAII CATG 3 cut(s) 94, 328, 352
CviJI RGCY 8 cut(s) 8, 17, 126, 146, 259, 362, 413, 474
CviKI_1 RGCY 8 cut(s) 8, 17, 126, 146, 259, 362, 413, 474
CviQI GTAC 3 cut(s) 214, 229, 388
DpnI GATC 2 cut(s) 195, 234
DpnII GATC 2 cut(s) 193, 232
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
EciI GGCGGA 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 159, 457
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 3 cut(s) 97, 331, 355
FaiI YATR 7 cut(s) 95, 178, 324, 329, 353, 482, 492
FalI AAGNNNNNCTT 4 cut(s) 112, 144, 115, 147
FatI CATG 3 cut(s) 93, 327, 351
FokI GGATG 2 cut(s) 90, 499
FspI TGCGCA 1 cut(s) 430
GlaI GCGC 3 cut(s) 74, 76, 430
GsaI CCCAGC 1 cut(s) 140
HaeIII GGCC 1 cut(s) 8
HapII CCGG 2 cut(s) 9, 112
HgaI GACGC 3 cut(s) 227, 431, 448
HhaI GCGC 3 cut(s) 75, 77, 431
Hin1II CATG 3 cut(s) 97, 331, 355
Hin6I GCGC 3 cut(s) 73, 75, 429
HinP1I GCGC 3 cut(s) 73, 75, 429
HinfI GANTC 8 cut(s) 44, 50, 166, 299, 369, 374, 449, 504
HpaII CCGG 2 cut(s) 9, 112
Hpy166II GTNNAC 2 cut(s) 117, 395
Hpy188I TCNGA 4 cut(s) 49, 84, 193, 198
Hpy188III TCNNGA 5 cut(s) 107, 170, 236, 303, 446
Hpy8I GTNNAC 2 cut(s) 117, 395
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 138, 147
HpyCH4III ACNGT 2 cut(s) 29, 392
HpyCH4V TGCA 2 cut(s) 274, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
Hsp92II CATG 3 cut(s) 97, 331, 355
HspAI GCGC 3 cut(s) 73, 75, 429
Kzo9I GATC 2 cut(s) 193, 232
LweI GCATC 1 cut(s) 471
MalI GATC 2 cut(s) 195, 234
MboI GATC 2 cut(s) 193, 232
MboII GAAGA 6 cut(s) 45, 74, 257, 260, 328, 369
MluCI AATT 2 cut(s) 278, 400
MluI ACGCGT 1 cut(s) 440
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 7 cut(s) 192, 235, 247, 325, 429, 488, 494
MroXI GAANNNNTTC 1 cut(s) 127
MslI CAYNNNNRTG 1 cut(s) 356
MspI CCGG 2 cut(s) 9, 112
MspR9I CCNGG 3 cut(s) 10, 161, 459
MvaI CCWGG 2 cut(s) 161, 459
MvnI CGCG 2 cut(s) 75, 442
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 10
NdeII GATC 2 cut(s) 193, 232
NlaIII CATG 3 cut(s) 97, 331, 355
NlaIV GGNNCC 1 cut(s) 158
NsbI TGCGCA 1 cut(s) 430
PauI GCGCGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 7 cut(s) 44, 50, 166, 299, 369, 449, 504
PfoI TCCNGGA 1 cut(s) 159
PinAI ACCGGT 1 cut(s) 111
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 159, 457
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 2 cut(s) 159, 457
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 395
PteI GCGCGC 1 cut(s) 73
RsaI GTAC 3 cut(s) 215, 230, 389
RsaNI GTAC 3 cut(s) 214, 229, 388
RseI CAYNNNNRTG 1 cut(s) 356
Sau3AI GATC 2 cut(s) 193, 232
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 3 cut(s) 10, 161, 459
SetI ASST 3 cut(s) 158, 400, 415
SfaNI GCATC 1 cut(s) 471
SinI GGWCC 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 356
Sse9I AATT 2 cut(s) 278, 400
SsiI CCGC 2 cut(s) 97, 296
StyD4I CCNGG 3 cut(s) 8, 159, 457
TaaI ACNGT 2 cut(s) 29, 392
TaqI TCGA 4 cut(s) 302, 372, 465, 476
TasI AATT 2 cut(s) 278, 400
TfiI GAWTC 7 cut(s) 44, 50, 166, 299, 369, 449, 504
TscAI CASTG 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 340, 501
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.