Rorug04G0331700

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015610
Physical Location & Seq
Forward (+)
50592482 .. 50595521
3040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0331700.1

Sequence Viewer

Length: 738 bp
ATGACTATTGCGGTGGTGGAAACCCACTACTTCAAATCCACAAAGTTTCCAGATTTTGTTCTAAAGGCAAACATAGTTGAATTCGCTTCCATTCCCCTGTCGACGTTGCTTTGTTGCAATGTTTTGAGTTATGTCCAGAAAGACAGTGATCTCAATGAACCATTACTCGAGGAGGAGTATGAAATTCAAACTGATAATTACACTACTGCTGGAGTCTGGAGCAAAATAACATTCCAGTGGATGAATCCAATTTTTAAAATGGGACTTCACATCCAAAAACTGGAAGTGTCTCATATACCATCTATTCCTCCTTCAGCAAGAGCCGAGAGTGCTTCTTCTTTGCTCCAAGAATCACTCGAACACCACTCTTCATTATTAAAAGCCATACTGAGGGCTGTATGGAAATCACTAGCCATAAATGCAGTTTTTGCAGGTGTCAATGTTGTTGCATCCTATACTGGTCCCTTCATAATCAGAAACTTTATGAAGTACATAGTTGGAAAGGATGACAGCTCAAACATGTATGGAGAGAAGCTTGCCTTCGTATTCTTTTTTGCAATGACTTTGGACTCAATTACTCAAAGACAAATGTCTTTTGGTGCTCGGCAAATTGGTCTACAAGTCAGAGCAGCTTTGACCACCTTAATCTACAAGAAGTGCATCTCGATTAAGTACTCTGGTCCAAGCAATGGTGAAATCATAAACTTAATCAACATGGACGTAGAAGTGGTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

245

Amino Acids

27.42

Weight (kDa)

6.52

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015610)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32391
malus_domestica MD13G1025600.v1.1 MD16G1028400.v1.1
prunus_persica Prupe.1G324300_v2.0.a1
pyrus_communis pycom13g02430 pycom16g02430
rosa_chinensis RchiOBHm_Chr4g0441231
rosa_laevigata RLG00000006109
rosa_multiflora Rmu_sc0032990.1_g000001
rosa_roxburghii Rroxscaffold_5G00382140
rosa_rugosa Rorug04G0331700
rosa_samantha Rh4AG383500 Rh4BG397600 Rh4CG412800 Rh4DG390300
rosa_wichuraiana Rw4G033090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 422
Acc36I ACCTGC 1 cut(s) 422
AccB7I CCANNNNNTGG 2 cut(s) 280, 689
AccI GTMKAC 2 cut(s) 101, 616
AciI CCGC 1 cut(s) 11
AcsI RAATTY 2 cut(s) 80, 183
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 2 cut(s) 491, 674
AfiI CCNNNNNNNGG 3 cut(s) 280, 390, 689
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 3 cut(s) 34, 80, 188
AluBI AGCT 3 cut(s) 513, 535, 632
AluI AGCT 3 cut(s) 513, 535, 632
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 1 cut(s) 294
Ama87I CYCGRG 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 629
ApoI RAATTY 2 cut(s) 80, 183
AspS9I GGNCC 2 cut(s) 461, 680
AsuHPI GGTGA 1 cut(s) 704
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 461, 680
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 1 cut(s) 641
BccI CCATC 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 422
BisI GCNGC 1 cut(s) 630
BlsI GCNGC 1 cut(s) 631
BmcAI AGTACT 1 cut(s) 674
Bme18I GGWCC 2 cut(s) 461, 680
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 461, 680
BmiI GGNNCC 1 cut(s) 463
BmsI GCATC 2 cut(s) 458, 669
BoxI GACNNNNGTC 1 cut(s) 589
BpmI CTGGAG 2 cut(s) 231, 238
Bsc4I CCNNNNNNNGG 3 cut(s) 280, 390, 689
Bse1I ACTGG 3 cut(s) 235, 285, 463
Bse3DI GCAATG 3 cut(s) 124, 564, 694
BseGI GGATG 4 cut(s) 246, 270, 449, 511
BseLI CCNNNNNNNGG 3 cut(s) 280, 390, 689
BseMI GCAATG 3 cut(s) 124, 564, 694
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 3 cut(s) 235, 285, 463
BseRI GAGGAG 2 cut(s) 185, 188
BseXI GCAGC 1 cut(s) 641
BsiHKAI GWGCWC 1 cut(s) 604
BsiHKCI CYCGRG 1 cut(s) 167
BslFI GGGAC 2 cut(s) 276, 447
BslI CCNNNNNNNGG 3 cut(s) 280, 390, 689
BsmAI GTCTC 1 cut(s) 294
BsmFI GGGAC 2 cut(s) 276, 447
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 463
BspMI ACCTGC 1 cut(s) 422
BsrDI GCAATG 3 cut(s) 124, 564, 694
BsrI ACTGG 3 cut(s) 235, 285, 463
BssMI GATC 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 373
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 1 cut(s) 389
BstF5I GGATG 4 cut(s) 246, 270, 449, 511
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 3 cut(s) 329, 419, 428
BstNSI RCATGY 1 cut(s) 523
BstPAI GACNNNNGTC 1 cut(s) 589
BstV1I GCAGC 1 cut(s) 641
BtsCI GGATG 4 cut(s) 246, 270, 449, 511
BtsIMutI CAGTG 2 cut(s) 151, 242
BveI ACCTGC 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 537
Cfr13I GGNCC 2 cut(s) 461, 680
Csp6I GTAC 2 cut(s) 490, 673
CviAII CATG 2 cut(s) 520, 715
CviJI RGCY 7 cut(s) 323, 383, 395, 413, 513, 535, 632
CviKI_1 RGCY 7 cut(s) 323, 383, 395, 413, 513, 535, 632
CviQI GTAC 2 cut(s) 490, 673
DdeI CTNAG 1 cut(s) 389
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
DraI TTTAAA 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
Eco47I GGWCC 2 cut(s) 461, 680
Eco57I CTGAAG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 80
FaeI CATG 2 cut(s) 523, 718
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FaqI GGGAC 2 cut(s) 276, 447
FatI CATG 2 cut(s) 519, 714
FblI GTMKAC 2 cut(s) 101, 616
Fnu4HI GCNGC 1 cut(s) 630
FokI GGATG 4 cut(s) 253, 257, 436, 518
Fsp4HI GCNGC 1 cut(s) 630
FspBI CTAG 1 cut(s) 410
GluI GCNGC 1 cut(s) 630
GsuI CTGGAG 2 cut(s) 231, 238
Hin1II CATG 2 cut(s) 523, 718
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 4 cut(s) 213, 244, 350, 569
HphI GGTGA 1 cut(s) 704
Hpy166II GTNNAC 2 cut(s) 102, 617
Hpy188I TCNGA 2 cut(s) 476, 626
Hpy188III TCNNGA 4 cut(s) 50, 136, 217, 664
Hpy8I GTNNAC 2 cut(s) 102, 617
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 3 cut(s) 321, 475, 550
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4IV ACGT 2 cut(s) 104, 720
HpyCH4V TGCA 6 cut(s) 117, 422, 431, 449, 557, 660
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 419, 428
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 2 cut(s) 104, 720
Hsp92II CATG 2 cut(s) 523, 718
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 2 cut(s) 219, 348
Lsp1109I GCAGC 1 cut(s) 641
LweI GCATC 2 cut(s) 458, 669
MaeI CTAG 1 cut(s) 410
MaeII ACGT 2 cut(s) 104, 720
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 2 cut(s) 327, 360
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 6 cut(s) 80, 183, 196, 249, 573, 609
MlyI GAGTC 2 cut(s) 222, 563
MmeI TCCRAC 2 cut(s) 478, 712
MnlI CCTC 4 cut(s) 163, 166, 318, 384
MseI TTAA 5 cut(s) 255, 377, 644, 669, 707
MslI CAYNNNNRTG 1 cut(s) 235
MwoI GCNNNNNNNGC 3 cut(s) 329, 419, 428
NdeII GATC 1 cut(s) 148
NlaIII CATG 2 cut(s) 523, 718
NlaIV GGNNCC 1 cut(s) 463
NmeAIII GCCGAG 2 cut(s) 349, 583
NspI RCATGY 1 cut(s) 523
PaeR7I CTCGAG 1 cut(s) 167
PaqCI CACCTGC 1 cut(s) 422
PciI ACATGT 1 cut(s) 519
PfeI GAWTC 2 cut(s) 244, 350
PflMI CCANNNNNTGG 2 cut(s) 280, 689
PkrI GCNGC 1 cut(s) 631
PleI GAGTC 2 cut(s) 221, 563
PpsI GAGTC 2 cut(s) 221, 563
PscI ACATGT 1 cut(s) 519
PshAI GACNNNNGTC 1 cut(s) 589
PspN4I GGNNCC 1 cut(s) 463
PspPI GGNCC 2 cut(s) 461, 680
PspXI VCTCGAGB 1 cut(s) 167
RsaI GTAC 2 cut(s) 491, 674
RsaNI GTAC 2 cut(s) 490, 673
RseI CAYNNNNRTG 1 cut(s) 235
SalI GTCGAC 1 cut(s) 100
SaqAI TTAA 5 cut(s) 255, 377, 644, 669, 707
SatI GCNGC 1 cut(s) 630
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 2 cut(s) 461, 680
ScaI AGTACT 1 cut(s) 674
SchI GAGTC 2 cut(s) 222, 563
SduI GDGCHC 1 cut(s) 604
SetI ASST 7 cut(s) 107, 436, 515, 537, 634, 644, 723
SfaNI GCATC 2 cut(s) 458, 669
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 2 cut(s) 461, 680
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 6 cut(s) 80, 183, 196, 249, 573, 609
SsiI CCGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 410
TaaI ACNGT 1 cut(s) 146
TaiI ACGT 2 cut(s) 107, 723
TaqI TCGA 4 cut(s) 101, 168, 357, 665
TasI AATT 6 cut(s) 80, 183, 196, 249, 573, 609
TatI WGTACW 2 cut(s) 489, 672
TfiI GAWTC 2 cut(s) 244, 350
Tru1I TTAA 5 cut(s) 255, 377, 644, 669, 707
Tru9I TTAA 5 cut(s) 255, 377, 644, 669, 707
TscAI CASTG 2 cut(s) 151, 242
TseI GCWGC 1 cut(s) 629
TspDTI ATGAA 6 cut(s) 171, 195, 257, 360, 457, 500
TspRI CASTG 2 cut(s) 151, 242
Van91I CCANNNNNTGG 2 cut(s) 280, 689
VpaK11BI GGWCC 2 cut(s) 461, 680
XapI RAATTY 2 cut(s) 80, 183
XceI RCATGY 1 cut(s) 523
XhoI CTCGAG 1 cut(s) 167
XmiI GTMKAC 2 cut(s) 101, 616
XspI CTAG 1 cut(s) 410
ZrmI AGTACT 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.