pycom13g02430

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015610
Physical Location & Seq
Reverse (-)
1667277 .. 1668344
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g02430.1

Sequence Viewer

Length: 561 bp
ATGGAGGTTGATCGAATTCAGGGGTCTCCTTCTTATTACAGTGTTCTTGGTGTCGGCTCGGAGTCTTCCGTGGAAGAGATAAGGCGTGCATATCGCAAGCTAGCGATGAAATGGCATCCGGACAGGTGGACAAGAACCCCTTCTTTGTTGGGTGAAGCCAAGCGGAAATTCCAGCAAATTCAAGAAGCCTATTCAGTGTTATCAGACCAGAGAAAACGAAGTATGTACGATGTTGGCCTGTACGATCCCGATGACGACGAAGAGGATGAGGGGTTCAGTGATTTTGTGCAAGAAATGGTGTCTCTGATGGCGGAATCCAGAAGAGAGGCAGAGAGTTATACCATGGAGGACCTGCAAGCAACGTTCATGGAGATGGTCAAAGGATTCGAGACTCCTCCTTCCTCTTTCTTCTGTGGACAACCGGCGGCTTTCGAACAATCTGGATGCTCGAAAAGAACGCGTCTCGAATCTAATTCCTGGATTGGCAGAGATTCAGGTGCCGGCTCATCTCTCCATGTACCAAACTTGGGGATGTACGGTGAAGGGTTCTTTACATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

187

Amino Acids

21.2

Weight (kDa)

4.77

Isoelectric Point (pI)

61.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 11 - 77 7.4e-24 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015610)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32391
malus_domestica MD13G1025600.v1.1 MD16G1028400.v1.1
prunus_persica Prupe.1G324300_v2.0.a1
pyrus_communis pycom13g02430 pycom16g02430
rosa_chinensis RchiOBHm_Chr4g0441231
rosa_laevigata RLG00000006109
rosa_multiflora Rmu_sc0032990.1_g000001
rosa_roxburghii Rroxscaffold_5G00382140
rosa_rugosa Rorug04G0331700
rosa_samantha Rh4AG383500 Rh4BG397600 Rh4CG412800 Rh4DG390300
rosa_wichuraiana Rw4G033090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 360
AccB1I GGYRCC 1 cut(s) 497
AccII CGCG 1 cut(s) 460
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 3 cut(s) 163, 311, 425
AclI AACGTT 1 cut(s) 362
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 3 cut(s) 15, 167, 177
AfaI GTAC 4 cut(s) 227, 242, 519, 536
AfiI CCNNNNNNNGG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 458
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 476
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AloI GAACNNNNNNTCC 2 cut(s) 257, 289
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 4 cut(s) 30, 306, 383, 467
AlwI GGATC 1 cut(s) 239
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 1 cut(s) 235
ApoI RAATTY 3 cut(s) 15, 167, 177
Asp700I GAANNNNTTC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 349
AsuHPI GGTGA 2 cut(s) 164, 551
AsuII TTCGAA 1 cut(s) 432
AsuNHI GCTAGC 1 cut(s) 100
AvaII GGWCC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 57
BccI CCATC 2 cut(s) 301, 367
BciT130I CCWGG 1 cut(s) 478
BcoDI GTCTC 4 cut(s) 30, 306, 383, 467
BfaI CTAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 360
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 478
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 349
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 1 cut(s) 478
BmsI GCATC 2 cut(s) 124, 434
BmtI GCTAGC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 69, 342
BsaWI WCCGGW 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse118I RCCGGY 2 cut(s) 421, 500
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 1 cut(s) 478
BseDI CCNNGG 2 cut(s) 69, 342
BseGI GGATG 4 cut(s) 115, 271, 449, 537
BseLI CCNNNNNNNGG 1 cut(s) 527
BseRI GAGGAG 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 460
BshFI GGCC 1 cut(s) 237
BshNI GGYRCC 1 cut(s) 497
BsiSI CCGG 3 cut(s) 119, 422, 501
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 4 cut(s) 30, 306, 383, 467
BsmBI CGTCTC 1 cut(s) 467
BsnI GGCC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 30
Bsp119I TTCGAA 1 cut(s) 432
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 2 cut(s) 10, 244
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 3 cut(s) 163, 311, 425
BspANI GGCC 1 cut(s) 237
BspEI TCCGGA 1 cut(s) 118
BspFNI CGCG 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 360
BspOI GCTAGC 1 cut(s) 104
BspPI GGATC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 497
BspTNI GGTCTC 1 cut(s) 30
BsrFI RCCGGY 2 cut(s) 421, 500
BssAI RCCGGY 2 cut(s) 421, 500
BssECI CCNNGG 2 cut(s) 69, 342
BssMI GATC 2 cut(s) 10, 244
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 478
Bst4CI ACNGT 2 cut(s) 41, 539
Bst6I CTCTTC 3 cut(s) 69, 255, 316
BstBI TTCGAA 1 cut(s) 432
BstC8I GCNNGC 5 cut(s) 87, 98, 102, 357, 502
BstDSI CCRYGG 2 cut(s) 69, 342
BstF5I GGATG 4 cut(s) 115, 271, 449, 537
BstFNI CGCG 1 cut(s) 460
BstKTI GATC 2 cut(s) 13, 247
BstMAI GTCTC 4 cut(s) 30, 306, 383, 467
BstMBI GATC 2 cut(s) 10, 244
BstNI CCWGG 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 476
BstUI CGCG 1 cut(s) 460
BstV2I GAAGAC 1 cut(s) 57
BsuRI GGCC 1 cut(s) 237
BtgI CCRYGG 2 cut(s) 69, 342
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 4 cut(s) 115, 271, 449, 537
BtsIMutI CAGTG 3 cut(s) 46, 201, 283
BveI ACCTGC 1 cut(s) 360
Cac8I GCNNGC 5 cut(s) 87, 98, 102, 357, 502
Cfr10I RCCGGY 2 cut(s) 421, 500
Cfr13I GGNCC 1 cut(s) 349
CseI GACGC 1 cut(s) 449
Csp6I GTAC 4 cut(s) 226, 241, 518, 535
CviAII CATG 3 cut(s) 343, 367, 515
CviJI RGCY 7 cut(s) 57, 100, 158, 188, 237, 428, 504
CviKI_1 RGCY 7 cut(s) 57, 100, 158, 188, 237, 428, 504
CviQI GTAC 4 cut(s) 226, 241, 518, 535
DpnI GATC 2 cut(s) 12, 246
DpnII GATC 2 cut(s) 10, 244
Eam1104I CTCTTC 3 cut(s) 69, 255, 316
EarI CTCTTC 3 cut(s) 69, 255, 316
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 349
EcoRI GAATTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 476
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 467
FaeI CATG 3 cut(s) 346, 370, 518
FaiI YATR 6 cut(s) 91, 224, 339, 344, 368, 516
FalI AAGNNNNNCTT 2 cut(s) 124, 156
FatI CATG 3 cut(s) 342, 366, 514
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 4 cut(s) 102, 278, 456, 544
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 1 cut(s) 101
GluI GCNGC 1 cut(s) 426
HaeIII GGCC 1 cut(s) 237
HapII CCGG 3 cut(s) 119, 422, 501
HgaI GACGC 1 cut(s) 449
Hin1II CATG 3 cut(s) 346, 370, 518
HinfI GANTC 6 cut(s) 62, 314, 384, 391, 467, 491
HpaII CCGG 3 cut(s) 119, 422, 501
HphI GGTGA 2 cut(s) 164, 551
Hpy166II GTNNAC 2 cut(s) 129, 416
Hpy188I TCNGA 3 cut(s) 61, 205, 306
Hpy188III TCNNGA 7 cut(s) 119, 182, 248, 318, 388, 441, 464
Hpy8I GTNNAC 2 cut(s) 129, 416
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 4 cut(s) 39, 150, 408, 536
HpyCH4III ACNGT 2 cut(s) 41, 539
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 3 cut(s) 89, 289, 355
HpySE526I ACGT 1 cut(s) 362
Hsp92II CATG 3 cut(s) 346, 370, 518
Kpn2I TCCGGA 1 cut(s) 118
KroI GCCGGC 1 cut(s) 500
KroNI GCCGGC 1 cut(s) 502
Kzo9I GATC 2 cut(s) 10, 244
LweI GCATC 2 cut(s) 124, 434
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 362
MalI GATC 2 cut(s) 12, 246
MboI GATC 2 cut(s) 10, 244
MboII GAAGA 5 cut(s) 57, 86, 272, 333, 400
MluCI AATT 4 cut(s) 15, 167, 177, 472
MluI ACGCGT 1 cut(s) 458
MlyI GAGTC 2 cut(s) 71, 385
MnlI CCTC 6 cut(s) 256, 262, 319, 340, 405, 412
MroI TCCGGA 1 cut(s) 118
MroNI GCCGGC 1 cut(s) 500
MroXI GAANNNNTTC 1 cut(s) 139
MslI CAYNNNNRTG 1 cut(s) 371
MspI CCGG 3 cut(s) 119, 422, 501
MspR9I CCNGG 1 cut(s) 478
MvaI CCWGG 1 cut(s) 478
MvnI CGCG 1 cut(s) 460
NaeI GCCGGC 1 cut(s) 502
NcoI CCATGG 1 cut(s) 342
NdeII GATC 2 cut(s) 10, 244
NgoMIV GCCGGC 1 cut(s) 500
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 3 cut(s) 346, 370, 518
NlaIV GGNNCC 1 cut(s) 499
NspV TTCGAA 1 cut(s) 432
PdiI GCCGGC 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 4 cut(s) 314, 384, 467, 491
PfoI TCCNGGA 1 cut(s) 476
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 2 cut(s) 70, 385
PpsI GAGTC 2 cut(s) 70, 385
PpuMI RGGWCCY 1 cut(s) 349
Psp1406I AACGTT 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 476
PspGI CCWGG 1 cut(s) 476
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 1 cut(s) 349
PspPPI RGGWCCY 1 cut(s) 349
RsaI GTAC 4 cut(s) 227, 242, 519, 536
RsaNI GTAC 4 cut(s) 226, 241, 518, 535
RseI CAYNNNNRTG 1 cut(s) 371
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 2 cut(s) 10, 244
Sau96I GGNCC 1 cut(s) 349
SchI GAGTC 2 cut(s) 71, 385
ScrFI CCNGG 1 cut(s) 478
SetI ASST 6 cut(s) 9, 102, 128, 354, 365, 499
SfaNI GCATC 2 cut(s) 124, 434
SfuI TTCGAA 1 cut(s) 432
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 371
Sse9I AATT 4 cut(s) 15, 167, 177, 472
SsiI CCGC 3 cut(s) 163, 311, 425
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 476
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 2 cut(s) 41, 539
TaiI ACGT 1 cut(s) 365
TaqI TCGA 5 cut(s) 13, 387, 432, 449, 465
TasI AATT 4 cut(s) 15, 167, 177, 472
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 4 cut(s) 314, 384, 467, 491
TscAI CASTG 3 cut(s) 46, 201, 283
TspDTI ATGAA 2 cut(s) 122, 355
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 3 cut(s) 46, 201, 283
VpaK11BI GGWCC 1 cut(s) 349
XapI RAATTY 3 cut(s) 15, 167, 177
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.