MD16G1028400.v1.1

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015610
Physical Location & Seq
Reverse (-)
2016517 .. 2018306
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1028400.v1.1.491

Sequence Viewer

Length: 564 bp
ATGGAGATGGAGGGTGATCGGATTCAGGGGTCTCCATCTTATTACAGCGTTCTTGGTGTCAGCTCGGATTCTTCCACTGAAGAGATAAGGCGTGCTTATCGCAAGCTGGCTATGCAATGGCATCCGGACAGGTGGACAAGAACTCCTTGTTTGTTGGGTGAAGCCAAGCGGAAATTCCAGCAACTTCAAGAAGCCTATTCAGTGTTATCAGACCAGAGAAAACGAAGAATGTACGACGCTGGCCTGTACGAACCTGACGACGAAGAGGACGAGGGGTTCGGCGATTTTGTGCAAGAAATGGTGTCTCTGATGGCGGAGTCCAGAAGAGAGGCAAAGAGTTATAGCATGGAGGACCTGCAGGCGATGTTCATGGAGATGGTCCAAGGGTTCGGCCCTCCTCCGTCCTCTTGTTTAAGTGGACAATCCGCGGCTTTCGAACAATCTGGATGCTCGAAGAGAACACGGCTCGAATCTAGTTCCGGGATTGGGAGAGGTTCGGGTTCAGGCTCGGCTCTACATGCACCAAACGTAGGGATGTATGGAGATGGATATTTTTCGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

188

Amino Acids

20.93

Weight (kDa)

4.97

Isoelectric Point (pI)

67.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 13 - 79 1.3e-24 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015610)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32391
malus_domestica MD13G1025600.v1.1 MD16G1028400.v1.1
prunus_persica Prupe.1G324300_v2.0.a1
pyrus_communis pycom13g02430 pycom16g02430
rosa_chinensis RchiOBHm_Chr4g0441231
rosa_laevigata RLG00000006109
rosa_multiflora Rmu_sc0032990.1_g000001
rosa_roxburghii Rroxscaffold_5G00382140
rosa_rugosa Rorug04G0331700
rosa_samantha Rh4AG383500 Rh4BG397600 Rh4CG412800 Rh4DG390300
rosa_wichuraiana Rw4G033090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 363
AccII CGCG 1 cut(s) 428
AccIII TCCGGA 1 cut(s) 124
AciI CCGC 4 cut(s) 169, 314, 426, 428
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 233, 248
AfiI CCNNNNNNNGG 2 cut(s) 486, 530
AgsI TTSAA 1 cut(s) 188
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 2 cut(s) 63, 106
AluI AGCT 2 cut(s) 63, 106
Alw26I GTCTC 2 cut(s) 36, 309
Aor13HI TCCGGA 1 cut(s) 124
AoxI GGCC 2 cut(s) 241, 391
ApoI RAATTY 1 cut(s) 173
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspS9I GGNCC 3 cut(s) 352, 379, 392
AsuC2I CCSGG 1 cut(s) 481
AsuHPI GGTGA 2 cut(s) 26, 170
AsuII TTCGAA 1 cut(s) 435
AvaII GGWCC 2 cut(s) 352, 379
BccI CCATC 4 cut(s) 43, 304, 370, 539
BceAI ACGGC 1 cut(s) 479
BcnI CCSGG 1 cut(s) 481
BcoDI GTCTC 2 cut(s) 36, 309
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 363
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
Bme1390I CCNGG 1 cut(s) 481
Bme18I GGWCC 2 cut(s) 352, 379
BmgT120I GGNCC 3 cut(s) 352, 379, 392
BmrFI CCNGG 1 cut(s) 481
BmsI GCATC 2 cut(s) 130, 437
Bpu14I TTCGAA 1 cut(s) 435
BpuMI CCSGG 1 cut(s) 481
BsaI GGTCTC 1 cut(s) 36
BsaJI CCNNGG 2 cut(s) 382, 426
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 486, 530
Bse3DI GCAATG 1 cut(s) 122
BseAI TCCGGA 1 cut(s) 124
BseDI CCNNGG 2 cut(s) 382, 426
BseGI GGATG 3 cut(s) 121, 452, 540
BseLI CCNNNNNNNGG 2 cut(s) 486, 530
BseMI GCAATG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 387
Bsh1236I CGCG 1 cut(s) 428
BshFI GGCC 2 cut(s) 243, 393
BsiSI CCGG 2 cut(s) 125, 480
BslI CCNNNNNNNGG 2 cut(s) 486, 530
BsmAI GTCTC 2 cut(s) 36, 309
BsnI GGCC 2 cut(s) 243, 393
Bso31I GGTCTC 1 cut(s) 36
Bsp119I TTCGAA 1 cut(s) 435
Bsp13I TCCGGA 1 cut(s) 124
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 4 cut(s) 169, 314, 426, 428
BspANI GGCC 2 cut(s) 243, 393
BspEI TCCGGA 1 cut(s) 124
BspFNI CGCG 1 cut(s) 428
BspMAI CTGCAG 1 cut(s) 360
BspMI ACCTGC 1 cut(s) 363
BspT104I TTCGAA 1 cut(s) 435
BspTNI GGTCTC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 122
BssECI CCNNGG 2 cut(s) 382, 426
BssMI GATC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 382
Bst6I CTCTTC 4 cut(s) 75, 258, 319, 449
BstBI TTCGAA 1 cut(s) 435
BstC8I GCNNGC 5 cut(s) 93, 104, 108, 241, 360
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 3 cut(s) 121, 452, 540
BstFNI CGCG 1 cut(s) 428
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 2 cut(s) 36, 309
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 112, 518
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 479
BstSFI CTRYAG 1 cut(s) 356
BstUI CGCG 1 cut(s) 428
BsuRI GGCC 2 cut(s) 243, 393
BtgI CCRYGG 1 cut(s) 426
BtgZI GCGATG 1 cut(s) 377
BtsCI GGATG 3 cut(s) 121, 452, 540
BtsIMutI CAGTG 2 cut(s) 75, 207
BveI ACCTGC 1 cut(s) 363
Cac8I GCNNGC 5 cut(s) 93, 104, 108, 241, 360
Cfr13I GGNCC 3 cut(s) 352, 379, 392
Cfr42I CCGCGG 1 cut(s) 429
CseI GACGC 1 cut(s) 245
Csp6I GTAC 2 cut(s) 232, 247
CviAII CATG 3 cut(s) 346, 370, 518
CviQI GTAC 2 cut(s) 232, 247
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eam1104I CTCTTC 4 cut(s) 75, 258, 319, 449
EarI CTCTTC 4 cut(s) 75, 258, 319, 449
EciI GGCGGA 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 36
Eco47I GGWCC 2 cut(s) 352, 379
Eco57I CTGAAG 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 3 cut(s) 349, 373, 521
FaiI YATR 6 cut(s) 113, 342, 347, 371, 519, 540
FalI AAGNNNNNCTT 4 cut(s) 79, 111, 130, 162
FatI CATG 3 cut(s) 345, 369, 517
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 3 cut(s) 108, 459, 547
Fsp4HI GCNGC 1 cut(s) 429
FspBI CTAG 1 cut(s) 474
GluI GCNGC 1 cut(s) 429
HaeIII GGCC 2 cut(s) 243, 393
HapII CCGG 2 cut(s) 125, 480
HgaI GACGC 1 cut(s) 245
Hin1II CATG 3 cut(s) 349, 373, 521
HinfI GANTC 4 cut(s) 22, 68, 317, 470
HpaII CCGG 2 cut(s) 125, 480
HphI GGTGA 2 cut(s) 26, 170
Hpy166II GTNNAC 2 cut(s) 135, 419
Hpy188I TCNGA 4 cut(s) 21, 67, 211, 309
Hpy188III TCNNGA 4 cut(s) 125, 188, 321, 444
Hpy8I GTNNAC 2 cut(s) 135, 419
Hpy99I CGWCG 2 cut(s) 239, 263
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 4 cut(s) 115, 292, 358, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 518
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 3 cut(s) 349, 373, 521
Kpn2I TCCGGA 1 cut(s) 124
KspI CCGCGG 1 cut(s) 429
Kzo9I GATC 1 cut(s) 16
LweI GCATC 2 cut(s) 130, 437
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 528
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 6 cut(s) 63, 92, 237, 275, 336, 466
MluCI AATT 1 cut(s) 173
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 9 cut(s) 4, 259, 265, 322, 343, 405, 408, 415, 485
MroI TCCGGA 1 cut(s) 124
MseI TTAA 1 cut(s) 413
MslI CAYNNNNRTG 1 cut(s) 374
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 2 cut(s) 125, 480
MspR9I CCNGG 1 cut(s) 481
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 2 cut(s) 112, 518
NciI CCSGG 1 cut(s) 481
NdeII GATC 1 cut(s) 16
NlaIII CATG 3 cut(s) 349, 373, 521
NmeAIII GCCGAG 1 cut(s) 488
NspI RCATGY 1 cut(s) 521
NspV TTCGAA 1 cut(s) 435
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 267
PfeI GAWTC 3 cut(s) 22, 68, 470
PfoI TCCNGGA 1 cut(s) 479
PkrI GCNGC 1 cut(s) 430
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PpuMI RGGWCCY 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 352
PspPI GGNCC 3 cut(s) 352, 379, 392
PspPPI RGGWCCY 1 cut(s) 352
PstI CTGCAG 1 cut(s) 360
RsaI GTAC 2 cut(s) 233, 248
RsaNI GTAC 2 cut(s) 232, 247
RseI CAYNNNNRTG 1 cut(s) 374
SacII CCGCGG 1 cut(s) 429
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 3 cut(s) 352, 379, 392
SbfI CCTGCAGG 1 cut(s) 360
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 481
SdaI CCTGCAGG 1 cut(s) 360
SetI ASST 7 cut(s) 65, 108, 134, 256, 357, 496, 531
SfaNI GCATC 2 cut(s) 130, 437
SfcI CTRYAG 1 cut(s) 356
Sfr303I CCGCGG 1 cut(s) 429
SfuI TTCGAA 1 cut(s) 435
SgrBI CCGCGG 1 cut(s) 429
SinI GGWCC 2 cut(s) 352, 379
SmiMI CAYNNNNRTG 1 cut(s) 374
Sse8387I CCTGCAGG 1 cut(s) 360
Sse9I AATT 1 cut(s) 173
SsiI CCGC 4 cut(s) 169, 314, 426, 428
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 1 cut(s) 479
StyI CCWWGG 1 cut(s) 382
TaiI ACGT 1 cut(s) 531
TaqI TCGA 3 cut(s) 435, 452, 468
TasI AATT 1 cut(s) 173
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 3 cut(s) 22, 68, 470
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 2 cut(s) 82, 207
TspDTI ATGAA 1 cut(s) 358
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 2 cut(s) 82, 207
VpaK11BI GGWCC 2 cut(s) 352, 379
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 521
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.