MD13G1025600.v1.1

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015610
Physical Location & Seq
Reverse (-)
1832641 .. 1834357
1717 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1025600.v1.1.491

Sequence Viewer

Length: 579 bp
ATGGAGGGTGATCGAATTCAGGGGTCTCCCTCTTATTACAGTGTTCTTGGTGTCGGCTCGGATTCTTCCGTGGAAGAGATAAGGCGTGCATATCGCAAGCTAGCTATGAAATGGCATCCGGACAGGTGGACAAGAACCCCTTCTTTGTTGGGTGAAGCCAAGCGGAAATTCCAGCAAATTCAAGAAGCCTATTCAGTGTTATCCGACCAGAGAAAACGAAGTATGTACGATGTTGGCCTGTACGATCCCGATGACGACGAAGAGGACGAGGGGTTCTGTGATTTTGTGCAAGAAATGGTGTCTCTGATGGCGGAATCCAGAAGAGAGGCAAAGAGTTATACCATGGAGGACTTGCAAGCAATGTTCATGGAGATGGTCAAAGGATTCGAGTCTCCTCCTTCCTCTTTCTTCTGTGGACAACCGGTGGCTTTCGAACAATCTGGATGCTCGAAAAGAACGCGTCTCGAATCTAATTCCGGGATTGGCAGAGATTCAGGTGCCGGCTCATCTCTCCATGTACCAAACTTAGGGATGTATGGAGAAGGATTCTTTTCATTTCAGTGGCAAGGACAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

193

Amino Acids

21.85

Weight (kDa)

4.99

Isoelectric Point (pI)

61.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 11 - 77 4.3e-24 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015610)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32391
malus_domestica MD13G1025600.v1.1 MD16G1028400.v1.1
prunus_persica Prupe.1G324300_v2.0.a1
pyrus_communis pycom13g02430 pycom16g02430
rosa_chinensis RchiOBHm_Chr4g0441231
rosa_laevigata RLG00000006109
rosa_multiflora Rmu_sc0032990.1_g000001
rosa_roxburghii Rroxscaffold_5G00382140
rosa_rugosa Rorug04G0331700
rosa_samantha Rh4AG383500 Rh4BG397600 Rh4CG412800 Rh4DG390300
rosa_wichuraiana Rw4G033090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 497
AccII CGCG 1 cut(s) 460
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 2 cut(s) 163, 311
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 3 cut(s) 15, 167, 177
AfaI GTAC 3 cut(s) 227, 242, 519
AfiI CCNNNNNNNGG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 458
AgeI ACCGGT 1 cut(s) 421
AgsI TTSAA 1 cut(s) 182
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AloI GAACNNNNNNTCC 2 cut(s) 257, 289
AluBI AGCT 2 cut(s) 100, 104
AluI AGCT 2 cut(s) 100, 104
Alw26I GTCTC 4 cut(s) 30, 306, 396, 467
AlwI GGATC 1 cut(s) 239
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 1 cut(s) 235
ApoI RAATTY 3 cut(s) 15, 167, 177
AsiGI ACCGGT 1 cut(s) 421
Asp700I GAANNNNTTC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 478
AsuHPI GGTGA 2 cut(s) 20, 164
AsuII TTCGAA 1 cut(s) 432
AsuNHI GCTAGC 1 cut(s) 100
BanI GGYRCC 1 cut(s) 497
BccI CCATC 2 cut(s) 301, 367
BcnI CCSGG 1 cut(s) 478
BcoDI GTCTC 4 cut(s) 30, 306, 396, 467
BfaI CTAG 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 478
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 1 cut(s) 478
BmsI GCATC 2 cut(s) 124, 434
BmtI GCTAGC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 478
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 69, 342
BsaWI WCCGGW 2 cut(s) 118, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse118I RCCGGY 2 cut(s) 421, 500
Bse3DI GCAATG 1 cut(s) 366
BseAI TCCGGA 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 69, 342
BseGI GGATG 3 cut(s) 115, 449, 537
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMI GCAATG 1 cut(s) 366
BseRI GAGGAG 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 460
BshFI GGCC 1 cut(s) 237
BshNI GGYRCC 1 cut(s) 497
BshTI ACCGGT 1 cut(s) 421
BsiSI CCGG 4 cut(s) 119, 422, 477, 501
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 4 cut(s) 30, 306, 396, 467
BsmBI CGTCTC 1 cut(s) 467
BsnI GGCC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 30
Bsp119I TTCGAA 1 cut(s) 432
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 2 cut(s) 10, 244
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 2 cut(s) 163, 311
BspANI GGCC 1 cut(s) 237
BspEI TCCGGA 1 cut(s) 118
BspFNI CGCG 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 499
BspOI GCTAGC 1 cut(s) 104
BspPI GGATC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 497
BspTNI GGTCTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 366
BsrFI RCCGGY 2 cut(s) 421, 500
BssAI RCCGGY 2 cut(s) 421, 500
BssECI CCNNGG 2 cut(s) 69, 342
BssMI GATC 2 cut(s) 10, 244
BssT1I CCWWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 3 cut(s) 69, 255, 316
BstBI TTCGAA 1 cut(s) 432
BstC8I GCNNGC 5 cut(s) 87, 98, 102, 357, 502
BstDEI CTNAG 1 cut(s) 526
BstDSI CCRYGG 2 cut(s) 69, 342
BstF5I GGATG 3 cut(s) 115, 449, 537
BstFNI CGCG 1 cut(s) 460
BstKTI GATC 2 cut(s) 13, 247
BstMAI GTCTC 4 cut(s) 30, 306, 396, 467
BstMBI GATC 2 cut(s) 10, 244
BstSCI CCNGG 1 cut(s) 476
BstUI CGCG 1 cut(s) 460
BsuRI GGCC 1 cut(s) 237
BtgI CCRYGG 2 cut(s) 69, 342
BtsCI GGATG 3 cut(s) 115, 449, 537
BtsIMutI CAGTG 3 cut(s) 46, 201, 566
Cac8I GCNNGC 5 cut(s) 87, 98, 102, 357, 502
Cfr10I RCCGGY 2 cut(s) 421, 500
CseI GACGC 1 cut(s) 449
Csp6I GTAC 3 cut(s) 226, 241, 518
CspAI ACCGGT 1 cut(s) 421
CviAII CATG 3 cut(s) 343, 367, 515
CviJI RGCY 8 cut(s) 57, 100, 104, 158, 188, 237, 428, 504
CviKI_1 RGCY 8 cut(s) 57, 100, 104, 158, 188, 237, 428, 504
CviQI GTAC 3 cut(s) 226, 241, 518
DdeI CTNAG 1 cut(s) 526
DpnI GATC 2 cut(s) 12, 246
DpnII GATC 2 cut(s) 10, 244
Eam1104I CTCTTC 3 cut(s) 69, 255, 316
EarI CTCTTC 3 cut(s) 69, 255, 316
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 467
FaeI CATG 3 cut(s) 346, 370, 518
FaiI YATR 8 cut(s) 91, 107, 224, 339, 344, 368, 516, 537
FalI AAGNNNNNCTT 2 cut(s) 124, 156
FatI CATG 3 cut(s) 342, 366, 514
FokI GGATG 3 cut(s) 102, 456, 544
FspBI CTAG 1 cut(s) 101
HaeIII GGCC 1 cut(s) 237
HapII CCGG 4 cut(s) 119, 422, 477, 501
HgaI GACGC 1 cut(s) 449
Hin1II CATG 3 cut(s) 346, 370, 518
HinfI GANTC 7 cut(s) 62, 314, 384, 389, 467, 491, 546
HpaII CCGG 4 cut(s) 119, 422, 477, 501
HphI GGTGA 2 cut(s) 20, 164
Hpy166II GTNNAC 2 cut(s) 129, 416
Hpy188I TCNGA 3 cut(s) 61, 205, 306
Hpy188III TCNNGA 6 cut(s) 119, 182, 248, 318, 441, 464
Hpy8I GTNNAC 2 cut(s) 129, 416
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 3 cut(s) 150, 408, 536
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 3 cut(s) 89, 289, 355
HpyF3I CTNAG 1 cut(s) 526
Hsp92II CATG 3 cut(s) 346, 370, 518
Kpn2I TCCGGA 1 cut(s) 118
KroI GCCGGC 1 cut(s) 500
KroNI GCCGGC 1 cut(s) 502
Kzo9I GATC 2 cut(s) 10, 244
LweI GCATC 2 cut(s) 124, 434
MaeI CTAG 1 cut(s) 101
MalI GATC 2 cut(s) 12, 246
MboI GATC 2 cut(s) 10, 244
MboII GAAGA 5 cut(s) 57, 86, 272, 333, 400
MluCI AATT 4 cut(s) 15, 167, 177, 472
MluI ACGCGT 1 cut(s) 458
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 7 cut(s) 40, 256, 262, 319, 340, 405, 412
MroI TCCGGA 1 cut(s) 118
MroNI GCCGGC 1 cut(s) 500
MroXI GAANNNNTTC 1 cut(s) 139
MslI CAYNNNNRTG 2 cut(s) 371, 559
MspI CCGG 4 cut(s) 119, 422, 477, 501
MspR9I CCNGG 1 cut(s) 478
MvnI CGCG 1 cut(s) 460
NaeI GCCGGC 1 cut(s) 502
NciI CCSGG 1 cut(s) 478
NcoI CCATGG 1 cut(s) 342
NdeII GATC 2 cut(s) 10, 244
NgoMIV GCCGGC 1 cut(s) 500
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 3 cut(s) 346, 370, 518
NlaIV GGNNCC 1 cut(s) 499
NspV TTCGAA 1 cut(s) 432
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PdiI GCCGGC 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 6 cut(s) 62, 314, 384, 467, 491, 546
PfoI TCCNGGA 1 cut(s) 476
PinAI ACCGGT 1 cut(s) 421
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 499
RsaI GTAC 3 cut(s) 227, 242, 519
RsaNI GTAC 3 cut(s) 226, 241, 518
RseI CAYNNNNRTG 2 cut(s) 371, 559
Sau3AI GATC 2 cut(s) 10, 244
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 478
SetI ASST 4 cut(s) 102, 106, 128, 499
SfaNI GCATC 2 cut(s) 124, 434
SfuI TTCGAA 1 cut(s) 432
SmiMI CAYNNNNRTG 2 cut(s) 371, 559
Sse9I AATT 4 cut(s) 15, 167, 177, 472
SsiI CCGC 2 cut(s) 163, 311
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 476
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 41
TaqI TCGA 5 cut(s) 13, 387, 432, 449, 465
TasI AATT 4 cut(s) 15, 167, 177, 472
TfiI GAWTC 6 cut(s) 62, 314, 384, 467, 491, 546
TscAI CASTG 3 cut(s) 46, 201, 566
TspDTI ATGAA 3 cut(s) 122, 355, 543
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 3 cut(s) 46, 201, 566
XapI RAATTY 3 cut(s) 15, 167, 177
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.