Rh4BG397600

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015610
Physical Location & Seq
Forward (+)
54871237 .. 54871893
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG397600.1

Sequence Viewer

Length: 537 bp
ATGGAAGCCGAAAACGGGCCAGCGTCTTATTACAGTATTCTGGGTGTTAATTCAGAGTCTTCTATGGAAGAAATTAAGCGCGCTTATCGGAAACTTGCCATGCAGTATCATCCAGACAGGTGGACGCGAAGCCCTTCTTTGCTGGGCGAAGCAGCCAAGCGGAGGTTCCAGGAGATTCAAGAAGCCTATTCGGTGTTATCGGATCAGAGGAAGCGAACAATGTACGACGCAGGCTTGTATGATCCTGATGATGAAGAAGACGAGGGGTTGTGTGACTTTGTGCAAGAATTGGTGTCTCTAATGGCGGAATCGAGACGAGAGCAGAAGAGTTATAGCATGGAGGATTTGCAGGACATGTTCATGGAGATGGTTCAAGGATTCGAGCCATCTTTTACATTCTGTGGGCCGTCCACGGCTAATTTTGAGCACGCTCAATCTGGGTGCGCAAAGAGGACGCGTCTGGAATCTAAGAATGTAAGTGTCGACACGGGCTCGCCTATAGGGATGTATGGAGGACCAGGATTCTTTTCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

178

Amino Acids

20.25

Weight (kDa)

4.69

Isoelectric Point (pI)

64.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 9 - 76 2e-24 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015610)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32391
malus_domestica MD13G1025600.v1.1 MD16G1028400.v1.1
prunus_persica Prupe.1G324300_v2.0.a1
pyrus_communis pycom13g02430 pycom16g02430
rosa_chinensis RchiOBHm_Chr4g0441231
rosa_laevigata RLG00000006109
rosa_multiflora Rmu_sc0032990.1_g000001
rosa_roxburghii Rroxscaffold_5G00382140
rosa_rugosa Rorug04G0331700
rosa_samantha Rh4AG383500 Rh4BG397600 Rh4CG412800 Rh4DG390300
rosa_wichuraiana Rw4G033090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 445
AccI GTMKAC 1 cut(s) 483
AccII CGCG 3 cut(s) 81, 127, 457
AciI CCGC 2 cut(s) 160, 305
AclWI GGATC 2 cut(s) 210, 236
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 2 cut(s) 15, 162
AflIII ACRYGT 2 cut(s) 354, 455
AgsI TTSAA 2 cut(s) 179, 374
AjnI CCWGG 2 cut(s) 168, 517
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 2 cut(s) 300, 307
AlwI GGATC 2 cut(s) 210, 236
AoxI GGCC 2 cut(s) 17, 404
ApeKI GCWGC 1 cut(s) 152
Asp700I GAANNNNTTC 1 cut(s) 133
AspLEI GCGC 3 cut(s) 81, 83, 446
AspS9I GGNCC 3 cut(s) 17, 404, 515
AvaII GGWCC 1 cut(s) 515
BanII GRGCYC 1 cut(s) 494
BbsI GAAGAC 2 cut(s) 51, 264
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 1 cut(s) 164
BccI CCATC 2 cut(s) 361, 394
BceAI ACGGC 2 cut(s) 391, 429
BciT130I CCWGG 2 cut(s) 170, 519
BcoDI GTCTC 2 cut(s) 300, 307
BfmI CTRYAG 1 cut(s) 498
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 2 cut(s) 170, 519
Bme18I GGWCC 1 cut(s) 515
BmgT120I GGNCC 3 cut(s) 17, 404, 515
BmiI GGNNCC 1 cut(s) 167
BmrFI CCNGG 2 cut(s) 170, 519
BpiI GAAGAC 2 cut(s) 51, 264
BsaJI CCNNGG 1 cut(s) 411
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 162
BseBI CCWGG 2 cut(s) 170, 519
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 2 cut(s) 109, 510
BseLI CCNNNNNNNGG 2 cut(s) 15, 162
BsePI GCGCGC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 164
BseYI CCCAGC 1 cut(s) 142
Bsh1236I CGCG 3 cut(s) 81, 127, 457
BshFI GGCC 2 cut(s) 19, 406
BsiHKAI GWGCWC 1 cut(s) 429
BslI CCNNNNNNNGG 2 cut(s) 15, 162
BsmAI GTCTC 2 cut(s) 300, 307
BsmBI CGTCTC 1 cut(s) 307
BsnI GGCC 2 cut(s) 19, 406
Bsp1286I GDGCHC 2 cut(s) 429, 494
Bsp143I GATC 2 cut(s) 202, 241
BspACI CCGC 2 cut(s) 160, 305
BspANI GGCC 2 cut(s) 19, 406
BspFNI CGCG 3 cut(s) 81, 127, 457
BspLI GGNNCC 1 cut(s) 167
BspPI GGATC 2 cut(s) 210, 236
BssECI CCNNGG 1 cut(s) 411
BssHII GCGCGC 1 cut(s) 79
BssMI GATC 2 cut(s) 202, 241
Bst2UI CCWGG 2 cut(s) 170, 519
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 320
BstC8I GCNNGC 5 cut(s) 21, 81, 232, 429, 494
BstDEI CTNAG 1 cut(s) 468
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 2 cut(s) 109, 510
BstFNI CGCG 3 cut(s) 81, 127, 457
BstHHI GCGC 3 cut(s) 81, 83, 446
BstKTI GATC 2 cut(s) 205, 244
BstMAI GTCTC 2 cut(s) 300, 307
BstMBI GATC 2 cut(s) 202, 241
BstNI CCWGG 2 cut(s) 170, 519
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 2 cut(s) 168, 517
BstSFI CTRYAG 1 cut(s) 498
BstUI CGCG 3 cut(s) 81, 127, 457
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 2 cut(s) 51, 264
BstXI CCANNNNNNTGG 1 cut(s) 120
BsuRI GGCC 2 cut(s) 19, 406
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 2 cut(s) 109, 510
Cac8I GCNNGC 5 cut(s) 21, 81, 232, 429, 494
CfoI GCGC 3 cut(s) 81, 83, 446
Cfr13I GGNCC 3 cut(s) 17, 404, 515
CseI GACGC 5 cut(s) 12, 133, 236, 446, 463
Csp6I GTAC 1 cut(s) 223
CviAII CATG 4 cut(s) 100, 337, 355, 361
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 468
DpnI GATC 2 cut(s) 204, 243
DpnII GATC 2 cut(s) 202, 241
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
EciI GGCGGA 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 494
Eco47I GGWCC 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 168, 517
EcoT38I GRGCYC 1 cut(s) 494
Esp3I CGTCTC 1 cut(s) 307
FaeI CATG 4 cut(s) 103, 340, 358, 364
FaiI YATR 9 cut(s) 65, 101, 240, 333, 338, 356, 362, 500, 510
FalI AAGNNNNNCTT 2 cut(s) 121, 153
FatI CATG 4 cut(s) 99, 336, 354, 360
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 2 cut(s) 96, 517
FriOI GRGCYC 1 cut(s) 494
Fsp4HI GCNGC 1 cut(s) 153
FspI TGCGCA 1 cut(s) 445
GlaI GCGC 3 cut(s) 80, 82, 445
GluI GCNGC 1 cut(s) 153
GsaI CCCAGC 1 cut(s) 146
HaeIII GGCC 2 cut(s) 19, 406
HgaI GACGC 5 cut(s) 12, 133, 236, 446, 463
HhaI GCGC 3 cut(s) 81, 83, 446
Hin1II CATG 4 cut(s) 103, 340, 358, 364
Hin6I GCGC 3 cut(s) 79, 81, 444
HinP1I GCGC 3 cut(s) 79, 81, 444
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 6 cut(s) 56, 175, 308, 378, 464, 522
Hpy166II GTNNAC 3 cut(s) 123, 411, 484
Hpy188I TCNGA 4 cut(s) 55, 90, 202, 207
Hpy188III TCNNGA 5 cut(s) 113, 179, 245, 312, 461
Hpy8I GTNNAC 3 cut(s) 123, 411, 484
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 144
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 3 cut(s) 103, 283, 349
HpyF3I CTNAG 1 cut(s) 468
Hsp92II CATG 4 cut(s) 103, 340, 358, 364
HspAI GCGC 3 cut(s) 79, 81, 444
Kzo9I GATC 2 cut(s) 202, 241
Lsp1109I GCAGC 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 272
MalI GATC 2 cut(s) 204, 243
MboI GATC 2 cut(s) 202, 241
MboII GAAGA 5 cut(s) 51, 80, 266, 269, 337
MhlI GDGCHC 2 cut(s) 429, 494
MluCI AATT 4 cut(s) 49, 72, 287, 418
MluI ACGCGT 1 cut(s) 455
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 6 cut(s) 156, 201, 256, 334, 444, 506
MroXI GAANNNNTTC 1 cut(s) 133
MseI TTAA 2 cut(s) 48, 75
MslI CAYNNNNRTG 2 cut(s) 359, 365
MspR9I CCNGG 2 cut(s) 170, 519
MvaI CCWGG 2 cut(s) 170, 519
MvnI CGCG 3 cut(s) 81, 127, 457
NdeII GATC 2 cut(s) 202, 241
NlaIII CATG 4 cut(s) 103, 340, 358, 364
NlaIV GGNNCC 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 272
NsbI TGCGCA 1 cut(s) 445
NspI RCATGY 1 cut(s) 358
PauI GCGCGC 1 cut(s) 79
PciI ACATGT 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 133
PfeI GAWTC 5 cut(s) 175, 308, 378, 464, 522
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PscI ACATGT 1 cut(s) 354
Psp6I CCWGG 2 cut(s) 168, 517
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 2 cut(s) 168, 517
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 3 cut(s) 17, 404, 515
PteI GCGCGC 1 cut(s) 79
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 2 cut(s) 359, 365
SalI GTCGAC 1 cut(s) 482
SaqAI TTAA 2 cut(s) 48, 75
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 202, 241
Sau96I GGNCC 3 cut(s) 17, 404, 515
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 2 cut(s) 170, 519
SduI GDGCHC 2 cut(s) 429, 494
SetI ASST 2 cut(s) 122, 167
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 1 cut(s) 515
SmiMI CAYNNNNRTG 2 cut(s) 359, 365
Sse9I AATT 4 cut(s) 49, 72, 287, 418
SsiI CCGC 2 cut(s) 160, 305
StyD4I CCNGG 2 cut(s) 168, 517
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 3 cut(s) 311, 381, 483
TasI AATT 4 cut(s) 49, 72, 287, 418
TfiI GAWTC 5 cut(s) 175, 308, 378, 464, 522
Tru1I TTAA 2 cut(s) 48, 75
Tru9I TTAA 2 cut(s) 48, 75
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 3 cut(s) 267, 349, 519
VpaK11BI GGWCC 1 cut(s) 515
XceI RCATGY 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.