FvH4_4g34300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016320
Physical Location & Seq
Forward (+)
32164612 .. 32165718
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34300.t1

Sequence Viewer

Length: 567 bp
ATGTCCCAATTTCAACCACAACAACTGCAGCAGCCACAGCCACTGGCACAACAGCAGCAGCAGCCGGTTCTTGTTTACCCGAACAATGTGAACAAGCCTCCGCCTTCCCACCATTCCAATGGCTCCTTTGGTTCAGTTTTCATTGTGCTGGCTGTGATTGTTGTCATCTCAGGCATTGCTTGCTTCCTGGGACGACTATGCAACCGCGACCGCTCCCACAAATCCAAACCCAATAAGCAGCCCAAGCACAAGGGGAACCACAAGACTCATCCCAACGAAGGTCACCATGGTGACCACGCTGAGCGTGGGAACCAACATTTCAGGGCCAAAGAAGGATCAGACATTGAGTTCGGGTTCGACAAGAGAATCCCAAGTGGCAAGCCCAGCGGCCCAAACTACACAAGCAGAGAGAGCAGAGCAGGATCAGGAGTCATCAATCACAACAAACCATTTGTAAATGTTCATCACCATGACATGAAATTAGGTGAAATGAAGCCTGGTGGTGGTGGTGGTGGTGGTGGTGGCCATCCTCATATTGTGATTGGTGAGCCTAGAGCCAGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.45

Weight (kDa)

10.06

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34300
malus_domestica MD13G1093000.v1.1 MD16G1094000.v1.1
prunus_persica Prupe.1G252500_v2.0.a1
pyrus_communis pycom13g08100 pycom16g08000
rosa_chinensis RchiOBHm_Chr4g0443731
rosa_laevigata RLG00000005895
rosa_multiflora Rmu_sc0001426.1_g000003
rosa_roxburghii Rroxscaffold_5G00384300
rosa_samantha Rh4AG407000 Rh4BG417900 Rh4CG432100 Rh4DG413200
rosa_wichuraiana Rw4G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 213
AccII CGCG 1 cut(s) 207
AciI CCGC 4 cut(s) 101, 205, 211, 387
AclWI GGATC 2 cut(s) 343, 430
AcoI YGGCCR 1 cut(s) 523
AfiI CCNNNNNNNGG 2 cut(s) 278, 503
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 2 cut(s) 186, 496
AleI CACNNNNGTG 1 cut(s) 288
AlwI GGATC 2 cut(s) 343, 430
AlwNI CAGNNNCTG 1 cut(s) 43
AoxI GGCC 3 cut(s) 324, 388, 523
ApeKI GCWGC 6 cut(s) 28, 31, 55, 58, 61, 238
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspS9I GGNCC 2 cut(s) 324, 389
AsuHPI GGTGA 5 cut(s) 275, 302, 458, 497, 557
BalI TGGCCA 1 cut(s) 525
BbvI GCAGC 6 cut(s) 40, 43, 67, 70, 73, 250
BccI CCATC 1 cut(s) 534
BciT130I CCWGG 2 cut(s) 188, 498
BfaI CTAG 1 cut(s) 552
BfmI CTRYAG 1 cut(s) 26
BisI GCNGC 7 cut(s) 29, 32, 56, 59, 62, 239, 388
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 7 cut(s) 30, 33, 57, 60, 63, 240, 389
Bme1390I CCNGG 2 cut(s) 188, 498
BmgT120I GGNCC 2 cut(s) 324, 389
BmiI GGNNCC 3 cut(s) 124, 257, 311
BmrFI CCNGG 2 cut(s) 188, 498
Bpu1102I GCTNAGC 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 187, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 503
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 2 cut(s) 188, 498
BseDI CCNNGG 2 cut(s) 187, 286
BseGI GGATG 2 cut(s) 268, 526
BseLI CCNNNNNNNGG 2 cut(s) 278, 503
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 183, 291
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 6 cut(s) 40, 43, 67, 70, 73, 250
BseYI CCCAGC 1 cut(s) 383
Bsh1236I CGCG 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 3 cut(s) 326, 390, 525
BsiEI CGRYCG 1 cut(s) 211
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 278, 503
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 3 cut(s) 326, 390, 525
Bsp143I GATC 2 cut(s) 335, 422
Bsp1720I GCTNAGC 1 cut(s) 300
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 4 cut(s) 101, 205, 211, 387
BspANI GGCC 3 cut(s) 326, 390, 525
BspCNI CTCAG 2 cut(s) 182, 292
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 3 cut(s) 124, 257, 311
BspMAI CTGCAG 1 cut(s) 30
BspPI GGATC 2 cut(s) 343, 430
BsrBI CCGCTC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 187, 286
BssMI GATC 2 cut(s) 335, 422
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 2 cut(s) 188, 498
BstAPI GCANNNNNTGC 1 cut(s) 180
BstC8I GCNNGC 3 cut(s) 150, 181, 380
BstDEI CTNAG 2 cut(s) 169, 300
BstDSI CCRYGG 1 cut(s) 286
BstEII GGTNACC 2 cut(s) 281, 290
BstF5I GGATG 2 cut(s) 268, 526
BstFNI CGCG 1 cut(s) 207
BstKTI GATC 2 cut(s) 338, 425
BstMBI GATC 2 cut(s) 335, 422
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 6 cut(s) 37, 61, 180, 244, 384, 411
BstNI CCWGG 2 cut(s) 188, 498
BstPI GGTNACC 2 cut(s) 281, 290
BstSCI CCNGG 2 cut(s) 186, 496
BstSFI CTRYAG 1 cut(s) 26
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 6 cut(s) 40, 43, 67, 70, 73, 250
BstXI CCANNNNNNTGG 1 cut(s) 119
BsuRI GGCC 3 cut(s) 326, 390, 525
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 2 cut(s) 268, 526
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 3 cut(s) 150, 181, 380
CaiI CAGNNNCTG 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 2 cut(s) 324, 389
CviAII CATG 3 cut(s) 287, 470, 475
DdeI CTNAG 2 cut(s) 169, 300
DpnI GATC 2 cut(s) 337, 424
DpnII GATC 2 cut(s) 335, 422
EaeI YGGCCR 1 cut(s) 523
EciI GGCGGA 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 286
Eco91I GGTNACC 2 cut(s) 281, 290
EcoO65I GGTNACC 2 cut(s) 281, 290
EcoRII CCWGG 2 cut(s) 186, 496
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 3 cut(s) 290, 473, 478
FaiI YATR 5 cut(s) 199, 288, 471, 476, 534
FaqI GGGAC 1 cut(s) 204
FatI CATG 3 cut(s) 286, 469, 474
Fnu4HI GCNGC 7 cut(s) 29, 32, 56, 59, 62, 239, 388
FokI GGATG 2 cut(s) 255, 513
Fsp4HI GCNGC 7 cut(s) 29, 32, 56, 59, 62, 239, 388
FspBI CTAG 1 cut(s) 552
GluI GCNGC 7 cut(s) 29, 32, 56, 59, 62, 239, 388
GsaI CCCAGC 1 cut(s) 387
HaeIII GGCC 3 cut(s) 326, 390, 525
HapII CCGG 1 cut(s) 65
Hin1II CATG 3 cut(s) 290, 473, 478
HinfI GANTC 3 cut(s) 265, 366, 429
HpaII CCGG 1 cut(s) 65
HphI GGTGA 5 cut(s) 275, 302, 458, 497, 557
Hpy166II GTNNAC 2 cut(s) 76, 91
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 1 cut(s) 426
Hpy8I GTNNAC 2 cut(s) 76, 91
HpyAV CCTTC 3 cut(s) 114, 272, 326
HpyCH4V TGCA 2 cut(s) 28, 201
HpyF10VI GCNNNNNNNGC 6 cut(s) 37, 61, 180, 244, 384, 411
HpyF3I CTNAG 2 cut(s) 169, 300
Hsp92II CATG 3 cut(s) 290, 473, 478
Kzo9I GATC 2 cut(s) 335, 422
LmnI GCTCC 2 cut(s) 128, 218
Lsp1109I GCAGC 6 cut(s) 40, 43, 67, 70, 73, 250
MaeI CTAG 1 cut(s) 552
MaeIII GTNAC 2 cut(s) 281, 290
MalI GATC 2 cut(s) 337, 424
MbiI CCGCTC 1 cut(s) 213
MboI GATC 2 cut(s) 335, 422
MlsI TGGCCA 1 cut(s) 525
MluCI AATT 2 cut(s) 8, 479
MluNI TGGCCA 1 cut(s) 525
MlyI GAGTC 2 cut(s) 259, 438
MnlI CCTC 3 cut(s) 108, 540, 554
Mox20I TGGCCA 1 cut(s) 525
MscI TGGCCA 1 cut(s) 525
MslI CAYNNNNRTG 3 cut(s) 117, 288, 468
Msp20I TGGCCA 1 cut(s) 525
MspA1I CMGCKG 1 cut(s) 387
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 2 cut(s) 188, 498
MvaI CCWGG 2 cut(s) 188, 498
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 6 cut(s) 37, 61, 180, 244, 384, 411
NcoI CCATGG 1 cut(s) 286
NdeII GATC 2 cut(s) 335, 422
NlaIII CATG 3 cut(s) 290, 473, 478
NlaIV GGNNCC 3 cut(s) 124, 257, 311
NmuCI GTSAC 2 cut(s) 281, 290
OliI CACNNNNGTG 1 cut(s) 288
PfeI GAWTC 1 cut(s) 366
PkrI GCNGC 7 cut(s) 30, 33, 57, 60, 63, 240, 389
PleI GAGTC 2 cut(s) 259, 437
PpsI GAGTC 2 cut(s) 259, 437
Psp6I CCWGG 2 cut(s) 186, 496
PspEI GGTNACC 2 cut(s) 281, 290
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 2 cut(s) 186, 496
PspN4I GGNNCC 3 cut(s) 124, 257, 311
PspPI GGNCC 2 cut(s) 324, 389
PstI CTGCAG 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 43
RseI CAYNNNNRTG 3 cut(s) 117, 288, 468
SatI GCNGC 7 cut(s) 29, 32, 56, 59, 62, 239, 388
Sau3AI GATC 2 cut(s) 335, 422
Sau96I GGNCC 2 cut(s) 324, 389
SchI GAGTC 2 cut(s) 259, 438
ScrFI CCNGG 2 cut(s) 188, 498
SetI ASST 2 cut(s) 283, 487
SfcI CTRYAG 1 cut(s) 26
SmiMI CAYNNNNRTG 3 cut(s) 117, 288, 468
Sse9I AATT 2 cut(s) 8, 479
SsiI CCGC 4 cut(s) 101, 205, 211, 387
SspMI CTAG 1 cut(s) 552
StyD4I CCNGG 2 cut(s) 186, 496
StyI CCWWGG 1 cut(s) 286
TaqI TCGA 1 cut(s) 357
TasI AATT 2 cut(s) 8, 479
TauI GCSGC 1 cut(s) 390
TfiI GAWTC 1 cut(s) 366
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 2 cut(s) 281, 290
TseI GCWGC 6 cut(s) 28, 31, 55, 58, 61, 238
Tsp45I GTSAC 2 cut(s) 281, 290
TspDTI ATGAA 4 cut(s) 130, 452, 491, 506
TspRI CASTG 1 cut(s) 48
XcmI CCANNNNNNNNNTGG 2 cut(s) 116, 302
XspI CTAG 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.