pycom13g08100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0016320
Physical Location & Seq
Reverse (-)
5396152 .. 5396691
540 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g08100.1

Sequence Viewer

Length: 540 bp
ATGTCCTCCTTGCAGCCTCAGCAGCAGCAGCAGCCTGTTGGCCCTGTTCTTGTTTACCCTAACGATGTCAATGGACAGCCTTCATCTTCCCACCATTCAAATGGATCATTCGGGACTGTTTTCATCGTGCTGGCCGTTATAATCGTCATCTCCGCCATCGCTTGCTTTCTCGGAAGGCTCTGCAATCGCCGCCACAACAGCTCAAAACCCCATAAGCAACCGCAACATAACTTTCGTCCCAAGAAAGAAGCTGGCCCTGCAGGTGGCGGTGGTGGAGACCATCGCGTGGAGTTTGGGAGAGCTCCCAGCTTTCGAGCAGGCCCGAAAGTAGCAGACGTCGAATTTGGATTCGATAGGAAAAACCCGAAAGGGAACAGCAGCAGCAGAGGAGAGGGCAGAGGATACATGAATCATCACCACAACAAACCACACCATAACGGAAATGGTGAAATGAATCGTCACATGAAAGGTGAAATGAAGCAGCATCCTGGCGGCGAGCATCATGTTGGAATGGGAGATCCGAGCCAGCGGATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.54

Weight (kDa)

10.2

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34300
malus_domestica MD13G1093000.v1.1 MD16G1094000.v1.1
prunus_persica Prupe.1G252500_v2.0.a1
pyrus_communis pycom13g08100 pycom16g08000
rosa_chinensis RchiOBHm_Chr4g0443731
rosa_laevigata RLG00000005895
rosa_multiflora Rmu_sc0001426.1_g000003
rosa_roxburghii Rroxscaffold_5G00384300
rosa_samantha Rh4AG407000 Rh4BG417900 Rh4CG432100 Rh4DG413200
rosa_wichuraiana Rw4G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
AarI CACCTGC 1 cut(s) 251
AatII GACGTC 1 cut(s) 339
Acc36I ACCTGC 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 286
AccII CGCG 1 cut(s) 285
AciI CCGC 6 cut(s) 153, 190, 221, 267, 492, 529
AclWI GGATC 2 cut(s) 112, 512
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 336
AfiI CCNNNNNNNGG 2 cut(s) 263, 286
AgsI TTSAA 1 cut(s) 99
AjnI CCWGG 1 cut(s) 487
AluBI AGCT 4 cut(s) 201, 251, 302, 309
AluI AGCT 4 cut(s) 201, 251, 302, 309
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 2 cut(s) 112, 512
AoxI GGCC 4 cut(s) 40, 132, 253, 319
ApeKI GCWGC 8 cut(s) 13, 22, 25, 28, 31, 378, 381, 481
ApoI RAATTY 1 cut(s) 341
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspS9I GGNCC 3 cut(s) 41, 254, 320
AsuHPI GGTGA 3 cut(s) 407, 458, 482
BanII GRGCYC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 304
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 8 cut(s) 25, 34, 37, 40, 43, 390, 393, 493
BccI CCATC 2 cut(s) 164, 288
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 489
BciVI GTATCC 1 cut(s) 395
BcoDI GTCTC 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 251
BfuI GTATCC 1 cut(s) 395
Bme1390I CCNGG 1 cut(s) 489
BmgT120I GGNCC 3 cut(s) 41, 254, 320
BmrFI CCNGG 1 cut(s) 489
BmsI GCATC 2 cut(s) 493, 508
Bpu10I CCTNAGC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 270
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 286
BseBI CCWGG 1 cut(s) 489
BseGI GGATG 2 cut(s) 484, 537
BseLI CCNNNNNNNGG 2 cut(s) 263, 286
BseMII CTCAG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 8 cut(s) 25, 34, 37, 40, 43, 390, 393, 493
BseYI CCCAGC 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 4 cut(s) 42, 134, 255, 321
BsiHKAI GWGCWC 1 cut(s) 304
BslFI GGGAC 2 cut(s) 127, 222
BslI CCNNNNNNNGG 2 cut(s) 263, 286
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 2 cut(s) 127, 222
BsnI GGCC 4 cut(s) 42, 134, 255, 321
Bso31I GGTCTC 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 2 cut(s) 104, 517
BspACI CCGC 6 cut(s) 153, 190, 221, 267, 492, 529
BspANI GGCC 4 cut(s) 42, 134, 255, 321
BspCNI CTCAG 1 cut(s) 31
BspFNI CGCG 1 cut(s) 285
BspMAI CTGCAG 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 251
BspPI GGATC 2 cut(s) 112, 512
BspTNI GGTCTC 1 cut(s) 270
BssMI GATC 2 cut(s) 104, 517
BssNI GRCGYC 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 336
BstC8I GCNNGC 6 cut(s) 132, 163, 253, 319, 497, 527
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 484, 537
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 2 cut(s) 107, 520
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 2 cut(s) 104, 517
BstMWI GCNNNNNNNGC 7 cut(s) 19, 22, 28, 31, 189, 198, 257
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 487
BstSFI CTRYAG 1 cut(s) 258
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 8 cut(s) 25, 34, 37, 40, 43, 390, 393, 493
BstX2I RGATCY 1 cut(s) 517
BstXI CCANNNNNNTGG 1 cut(s) 101
BstYI RGATCY 1 cut(s) 517
BsuI GTATCC 1 cut(s) 395
BsuRI GGCC 4 cut(s) 42, 134, 255, 321
BtgZI GCGATG 2 cut(s) 142, 266
BtsCI GGATG 2 cut(s) 484, 537
BveI ACCTGC 1 cut(s) 251
Cac8I GCNNGC 6 cut(s) 132, 163, 253, 319, 497, 527
Cfr13I GGNCC 3 cut(s) 41, 254, 320
CviAII CATG 3 cut(s) 406, 463, 503
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 106, 519
DpnII GATC 2 cut(s) 104, 517
EaeI YGGCCR 1 cut(s) 132
EciI GGCGGA 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 304
Eco31I GGTCTC 1 cut(s) 270
Eco53kI GAGCTC 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 487
EcoT38I GRGCYC 1 cut(s) 304
FaeI CATG 3 cut(s) 409, 466, 506
FaiI YATR 7 cut(s) 140, 213, 228, 407, 435, 464, 504
FaqI GGGAC 2 cut(s) 127, 222
FatI CATG 3 cut(s) 405, 462, 502
FokI GGATG 1 cut(s) 471
FriOI GRGCYC 1 cut(s) 304
GsaI CCCAGC 1 cut(s) 309
HaeIII GGCC 4 cut(s) 42, 134, 255, 321
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 3 cut(s) 409, 466, 506
HinfI GANTC 3 cut(s) 348, 409, 454
HphI GGTGA 3 cut(s) 407, 458, 482
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 2 cut(s) 173, 522
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 90, 168
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 3 cut(s) 13, 183, 260
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 22, 28, 31, 189, 198, 257
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 3 cut(s) 409, 466, 506
Kzo9I GATC 2 cut(s) 104, 517
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 8 cut(s) 25, 34, 37, 40, 43, 390, 393, 493
LweI GCATC 2 cut(s) 493, 508
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 458
MalI GATC 2 cut(s) 106, 519
MboI GATC 2 cut(s) 104, 517
MboII GAAGA 1 cut(s) 78
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 487
MnlI CCTC 5 cut(s) 16, 27, 380, 385, 392
MslI CAYNNNNRTG 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 529
MspR9I CCNGG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 489
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 7 cut(s) 19, 22, 28, 31, 189, 198, 257
NdeII GATC 2 cut(s) 104, 517
NlaIII CATG 3 cut(s) 409, 466, 506
NmuCI GTSAC 1 cut(s) 458
PaqCI CACCTGC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PfeI GAWTC 3 cut(s) 348, 409, 454
PflMI CCANNNNNTGG 1 cut(s) 286
PsiI TTATAA 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 487
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 1 cut(s) 487
PspPI GGNCC 3 cut(s) 41, 254, 320
PstI CTGCAG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 517
RseI CAYNNNNRTG 1 cut(s) 99
SacI GAGCTC 1 cut(s) 304
Sau3AI GATC 2 cut(s) 104, 517
Sau96I GGNCC 3 cut(s) 41, 254, 320
SbfI CCTGCAGG 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 489
SdaI CCTGCAGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 304
SetI ASST 7 cut(s) 203, 253, 265, 304, 311, 339, 472
SfaNI GCATC 2 cut(s) 493, 508
SfcI CTRYAG 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse8387I CCTGCAGG 1 cut(s) 262
Sse9I AATT 1 cut(s) 341
SsiI CCGC 6 cut(s) 153, 190, 221, 267, 492, 529
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 487
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 313, 339, 351
TasI AATT 1 cut(s) 341
TauI GCSGC 2 cut(s) 192, 495
TfiI GAWTC 3 cut(s) 348, 409, 454
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 8 cut(s) 13, 22, 25, 28, 31, 378, 381, 481
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 6 cut(s) 72, 112, 422, 467, 479, 491
TspGWI ACGGA 1 cut(s) 453
Van91I CCANNNNNTGG 1 cut(s) 286
XapI RAATTY 1 cut(s) 341
XcmI CCANNNNNNNNNTGG 2 cut(s) 98, 440
ZraI GACGTC 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.