Rroxscaffold_5G00384300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016320
Physical Location & Seq
Forward (+)
63748482 .. 63749042
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384300.1

Sequence Viewer

Length: 561 bp
ATGTCCCAATTCCAACCACAACAACTGCAACAGCCGCAGCCGCAGCCGCTACCACAGCAGCAGCAGCAGCCGGTTCTTGTTTACCCTAACACTGTGAACAAGCCGCCACCTTCCCACCATTCCAATGGGTCATTTGGCTCGGTTTTCATTGTCCTAGCCGTGATCGTGGTCATCTCAGGCATTGCTTGCTTCCTGGGAAGACTCTGCAACCGCGACCGCTCCCACAAATCCAAACACAATAAGCAGTCCAAGAACAAGGGGAACAACAAAGCTCATCCCAAAGAAGGTCATCATGGTGATCATGTTGAGTTTGGGAGCCAACATTTCCGGCCCAAAGAAGGAACTGACATCGAATTCGGGTTCGACAAGAGAATCCCAAGTGGCAAGCCCAGCGGCCCAAACTACACCAGCAGAGAGAGCAGAGCAGGATCAGGAGTCATCAATCACAACAAACCATTTGTAAATCTTCATCACAATGACATGAAATTAGGTGAAATGAAGCCTGGTGGTGGTGGTGGCGGTGGTCATGTTGTGATTGGTGAGCCCAGAGCCAGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.32

Weight (kDa)

10.01

Isoelectric Point (pI)

62.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34300
malus_domestica MD13G1093000.v1.1 MD16G1094000.v1.1
prunus_persica Prupe.1G252500_v2.0.a1
pyrus_communis pycom13g08100 pycom16g08000
rosa_chinensis RchiOBHm_Chr4g0443731
rosa_laevigata RLG00000005895
rosa_multiflora Rmu_sc0001426.1_g000003
rosa_roxburghii Rroxscaffold_5G00384300
rosa_samantha Rh4AG407000 Rh4BG417900 Rh4CG432100 Rh4DG413200
rosa_wichuraiana Rw4G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 219
AccII CGCG 1 cut(s) 213
AciI CCGC 8 cut(s) 35, 41, 47, 104, 211, 217, 393, 519
AclWI GGATC 1 cut(s) 436
AcsI RAATTY 1 cut(s) 353
AfiI CCNNNNNNNGG 3 cut(s) 284, 338, 509
AjnI CCWGG 2 cut(s) 192, 502
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
AlwI GGATC 1 cut(s) 436
AoxI GGCC 2 cut(s) 329, 394
ApeKI GCWGC 6 cut(s) 37, 43, 58, 61, 64, 67
ApoI RAATTY 1 cut(s) 353
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AspS9I GGNCC 2 cut(s) 330, 395
AsuHPI GGTGA 3 cut(s) 308, 503, 551
BanII GRGCYC 1 cut(s) 546
BbsI GAAGAC 1 cut(s) 205
BbvI GCAGC 6 cut(s) 49, 55, 70, 73, 76, 79
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 194, 504
BclI TGATCA 1 cut(s) 298
BfaI CTAG 1 cut(s) 155
Bme1390I CCNGG 2 cut(s) 194, 504
BmgT120I GGNCC 2 cut(s) 330, 395
BmiI GGNNCC 1 cut(s) 317
BmrFI CCNGG 2 cut(s) 194, 504
BpiI GAAGAC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 338, 509
Bse118I RCCGGY 1 cut(s) 70
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 2 cut(s) 194, 504
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 3 cut(s) 284, 338, 509
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 189
BseXI GCAGC 6 cut(s) 49, 55, 70, 73, 76, 79
BseYI CCCAGC 1 cut(s) 389
Bsh1236I CGCG 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 2 cut(s) 331, 396
BsiEI CGRYCG 1 cut(s) 217
BsiSI CCGG 2 cut(s) 71, 328
BslI CCNNNNNNNGG 3 cut(s) 284, 338, 509
BsnI GGCC 2 cut(s) 331, 396
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 3 cut(s) 162, 298, 428
BspACI CCGC 8 cut(s) 35, 41, 47, 104, 211, 217, 393, 519
BspANI GGCC 2 cut(s) 331, 396
BspCNI CTCAG 1 cut(s) 188
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 317
BspPI GGATC 1 cut(s) 436
BsrBI CCGCTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 3 cut(s) 162, 298, 428
Bst2UI CCWGG 2 cut(s) 194, 504
Bst4CI ACNGT 1 cut(s) 94
BstAPI GCANNNNNTGC 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 187, 386
BstDEI CTNAG 1 cut(s) 175
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 1 cut(s) 213
BstKTI GATC 3 cut(s) 165, 301, 431
BstMBI GATC 3 cut(s) 162, 298, 428
BstMCI CGRYCG 1 cut(s) 217
BstNI CCWGG 2 cut(s) 194, 504
BstSCI CCNGG 2 cut(s) 192, 502
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 6 cut(s) 49, 55, 70, 73, 76, 79
BstV2I GAAGAC 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 125
BsuRI GGCC 2 cut(s) 331, 396
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 187, 386
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 330, 395
CviAII CATG 4 cut(s) 293, 302, 481, 527
DdeI CTNAG 1 cut(s) 175
DpnI GATC 3 cut(s) 164, 300, 430
DpnII GATC 3 cut(s) 162, 298, 428
Eco24I GRGCYC 1 cut(s) 546
EcoRI GAATTC 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 192, 502
EcoT38I GRGCYC 1 cut(s) 546
FaeI CATG 4 cut(s) 296, 305, 484, 530
FaiI YATR 4 cut(s) 294, 303, 482, 528
FatI CATG 4 cut(s) 292, 301, 480, 526
FbaI TGATCA 1 cut(s) 298
FokI GGATG 1 cut(s) 261
FriOI GRGCYC 1 cut(s) 546
FspBI CTAG 1 cut(s) 155
GsaI CCCAGC 1 cut(s) 393
HaeIII GGCC 2 cut(s) 331, 396
HapII CCGG 2 cut(s) 71, 328
Hin1II CATG 4 cut(s) 296, 305, 484, 530
HinfI GANTC 3 cut(s) 201, 372, 435
HpaII CCGG 2 cut(s) 71, 328
HphI GGTGA 3 cut(s) 308, 503, 551
Hpy166II GTNNAC 2 cut(s) 82, 97
Hpy188III TCNNGA 1 cut(s) 432
Hpy8I GTNNAC 2 cut(s) 82, 97
HpyAV CCTTC 3 cut(s) 120, 278, 332
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 28, 207
HpyF3I CTNAG 1 cut(s) 175
Hsp92II CATG 4 cut(s) 296, 305, 484, 530
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 162, 298, 428
LmnI GCTCC 2 cut(s) 224, 315
Lsp1109I GCAGC 6 cut(s) 49, 55, 70, 73, 76, 79
MaeI CTAG 1 cut(s) 155
MalI GATC 3 cut(s) 164, 300, 430
MbiI CCGCTC 1 cut(s) 219
MboI GATC 3 cut(s) 162, 298, 428
MboII GAAGA 2 cut(s) 210, 458
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 3 cut(s) 8, 353, 485
MlyI GAGTC 2 cut(s) 195, 444
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 1 cut(s) 548
MslI CAYNNNNRTG 3 cut(s) 123, 294, 474
MspA1I CMGCKG 1 cut(s) 393
MspI CCGG 2 cut(s) 71, 328
MspR9I CCNGG 2 cut(s) 194, 504
MvaI CCWGG 2 cut(s) 194, 504
MvnI CGCG 1 cut(s) 213
NdeII GATC 3 cut(s) 162, 298, 428
NlaIII CATG 4 cut(s) 296, 305, 484, 530
NlaIV GGNNCC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 372
PleI GAGTC 2 cut(s) 195, 443
PpsI GAGTC 2 cut(s) 195, 443
Psp6I CCWGG 2 cut(s) 192, 502
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 2 cut(s) 192, 502
PspN4I GGNNCC 1 cut(s) 317
PspPI GGNCC 2 cut(s) 330, 395
RseI CAYNNNNRTG 3 cut(s) 123, 294, 474
Sau3AI GATC 3 cut(s) 162, 298, 428
Sau96I GGNCC 2 cut(s) 330, 395
SchI GAGTC 2 cut(s) 195, 444
ScrFI CCNGG 2 cut(s) 194, 504
SduI GDGCHC 1 cut(s) 546
SetI ASST 4 cut(s) 112, 274, 289, 493
SmiMI CAYNNNNRTG 3 cut(s) 123, 294, 474
Sse9I AATT 3 cut(s) 8, 353, 485
SsiI CCGC 8 cut(s) 35, 41, 47, 104, 211, 217, 393, 519
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 192, 502
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 351, 363
TasI AATT 3 cut(s) 8, 353, 485
TauI GCSGC 5 cut(s) 37, 43, 49, 106, 396
TfiI GAWTC 1 cut(s) 372
TscAI CASTG 1 cut(s) 97
TseI GCWGC 6 cut(s) 37, 43, 58, 61, 64, 67
TspDTI ATGAA 4 cut(s) 136, 458, 497, 512
TspRI CASTG 1 cut(s) 97
XapI RAATTY 1 cut(s) 353
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.