Rmu_sc0001426.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001426.1
OG0016320
Physical Location & Seq
Reverse (-)
4571 .. 5128
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001426.1_g000003.1.cds

Sequence Viewer

Length: 558 bp
atgtcccaattccaaccacaacaactgcaacagccacagccgctaccacagcagcagcagcagccggttcttgtttaccctaacaatgtgaacaagccgccatcttcccaccattccaatgggtcatttggctcggttttcattgtcctagccgtgatcgtggtcatctcaggcattgcttgcttcctgggaagactgtgcaaccgcgaccgctcccacaaatccaaacacaataagcagtccaagaacaaggggaacaacaaagctcatcccaaagaaggtcatcatggtgatcatgttgagtttgggagccaacatttccggcccaaagaaggaactgacattgaattcgggttcgacaagagaatcccaagtggcaagcccagcggcccaaactacaccagcagagagagcagagcaggatcaggagtcatcaatcacaacaaaccatttgtaaatcttcatcacaatgacatgaaattaggtgaaatgaagcctggtggtggtggtggtggtggtggtcatgttgtgattggtgagcccagagccagaggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.15

Weight (kDa)

10.01

Isoelectric Point (pI)

61.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34300
malus_domestica MD13G1093000.v1.1 MD16G1094000.v1.1
prunus_persica Prupe.1G252500_v2.0.a1
pyrus_communis pycom13g08100 pycom16g08000
rosa_chinensis RchiOBHm_Chr4g0443731
rosa_laevigata RLG00000005895
rosa_multiflora Rmu_sc0001426.1_g000003
rosa_roxburghii Rroxscaffold_5G00384300
rosa_samantha Rh4AG407000 Rh4BG417900 Rh4CG432100 Rh4DG413200
rosa_wichuraiana Rw4G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 213
AccII CGCG 1 cut(s) 207
AciI CCGC 5 cut(s) 41, 98, 205, 211, 387
AclWI GGATC 1 cut(s) 430
AcsI RAATTY 1 cut(s) 347
AfiI CCNNNNNNNGG 3 cut(s) 278, 332, 503
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 2 cut(s) 186, 496
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
AlwI GGATC 1 cut(s) 430
AoxI GGCC 2 cut(s) 323, 388
ApeKI GCWGC 4 cut(s) 52, 55, 58, 61
ApoI RAATTY 1 cut(s) 347
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspS9I GGNCC 2 cut(s) 324, 389
AsuHPI GGTGA 3 cut(s) 302, 497, 548
BanII GRGCYC 1 cut(s) 543
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 4 cut(s) 64, 67, 70, 73
BccI CCATC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 2 cut(s) 188, 498
BclI TGATCA 1 cut(s) 292
BfaI CTAG 1 cut(s) 149
BisI GCNGC 7 cut(s) 41, 53, 56, 59, 62, 98, 388
BlsI GCNGC 7 cut(s) 42, 54, 57, 60, 63, 99, 389
Bme1390I CCNGG 2 cut(s) 188, 498
BmgT120I GGNCC 2 cut(s) 324, 389
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 2 cut(s) 188, 498
BpiI GAAGAC 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 187
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 332, 503
Bse118I RCCGGY 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 2 cut(s) 188, 498
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 3 cut(s) 278, 332, 503
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 183
BseXI GCAGC 4 cut(s) 64, 67, 70, 73
BseYI CCCAGC 1 cut(s) 383
Bsh1236I CGCG 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 2 cut(s) 325, 390
BsiEI CGRYCG 1 cut(s) 211
BsiSI CCGG 2 cut(s) 65, 322
BslI CCNNNNNNNGG 3 cut(s) 278, 332, 503
BsnI GGCC 2 cut(s) 325, 390
Bsp1286I GDGCHC 1 cut(s) 543
Bsp143I GATC 3 cut(s) 156, 292, 422
BspACI CCGC 5 cut(s) 41, 98, 205, 211, 387
BspANI GGCC 2 cut(s) 325, 390
BspCNI CTCAG 1 cut(s) 182
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 311
BspPI GGATC 1 cut(s) 430
BsrBI CCGCTC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 3 cut(s) 156, 292, 422
Bst2UI CCWGG 2 cut(s) 188, 498
Bst4CI ACNGT 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 181, 380
BstDEI CTNAG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 1 cut(s) 207
BstKTI GATC 3 cut(s) 159, 295, 425
BstMBI GATC 3 cut(s) 156, 292, 422
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 7 cut(s) 40, 49, 58, 61, 180, 384, 411
BstNI CCWGG 2 cut(s) 188, 498
BstSCI CCNGG 2 cut(s) 186, 496
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 4 cut(s) 64, 67, 70, 73
BstV2I GAAGAC 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 119
BsuRI GGCC 2 cut(s) 325, 390
BtsCI GGATG 1 cut(s) 268
Cac8I GCNNGC 2 cut(s) 181, 380
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 2 cut(s) 324, 389
CviAII CATG 4 cut(s) 287, 296, 475, 524
DdeI CTNAG 1 cut(s) 169
DpnI GATC 3 cut(s) 158, 294, 424
DpnII GATC 3 cut(s) 156, 292, 422
Eco24I GRGCYC 1 cut(s) 543
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 186, 496
EcoT38I GRGCYC 1 cut(s) 543
FaeI CATG 4 cut(s) 290, 299, 478, 527
FaiI YATR 4 cut(s) 288, 297, 476, 525
FatI CATG 4 cut(s) 286, 295, 474, 523
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 7 cut(s) 41, 53, 56, 59, 62, 98, 388
FokI GGATG 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 7 cut(s) 41, 53, 56, 59, 62, 98, 388
FspBI CTAG 1 cut(s) 149
GluI GCNGC 7 cut(s) 41, 53, 56, 59, 62, 98, 388
GsaI CCCAGC 1 cut(s) 387
HaeIII GGCC 2 cut(s) 325, 390
HapII CCGG 2 cut(s) 65, 322
Hin1II CATG 4 cut(s) 290, 299, 478, 527
HinfI GANTC 2 cut(s) 366, 429
HpaII CCGG 2 cut(s) 65, 322
HphI GGTGA 3 cut(s) 302, 497, 548
Hpy166II GTNNAC 2 cut(s) 76, 91
Hpy188III TCNNGA 1 cut(s) 426
Hpy8I GTNNAC 2 cut(s) 76, 91
HpyAV CCTTC 2 cut(s) 272, 326
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 28, 201
HpyF10VI GCNNNNNNNGC 7 cut(s) 40, 49, 58, 61, 180, 384, 411
HpyF3I CTNAG 1 cut(s) 169
Hsp92II CATG 4 cut(s) 290, 299, 478, 527
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 3 cut(s) 156, 292, 422
LmnI GCTCC 2 cut(s) 218, 309
Lsp1109I GCAGC 4 cut(s) 64, 67, 70, 73
MaeI CTAG 1 cut(s) 149
MalI GATC 3 cut(s) 158, 294, 424
MbiI CCGCTC 1 cut(s) 213
MboI GATC 3 cut(s) 156, 292, 422
MboII GAAGA 3 cut(s) 96, 204, 452
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 3 cut(s) 8, 347, 479
MlyI GAGTC 1 cut(s) 438
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 1 cut(s) 545
MslI CAYNNNNRTG 3 cut(s) 117, 288, 468
MspA1I CMGCKG 1 cut(s) 387
MspI CCGG 2 cut(s) 65, 322
MspR9I CCNGG 2 cut(s) 188, 498
MvaI CCWGG 2 cut(s) 188, 498
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 7 cut(s) 40, 49, 58, 61, 180, 384, 411
NdeII GATC 3 cut(s) 156, 292, 422
NlaIII CATG 4 cut(s) 290, 299, 478, 527
NlaIV GGNNCC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 366
PkrI GCNGC 7 cut(s) 42, 54, 57, 60, 63, 99, 389
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
Psp6I CCWGG 2 cut(s) 186, 496
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 2 cut(s) 186, 496
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 2 cut(s) 324, 389
RseI CAYNNNNRTG 3 cut(s) 117, 288, 468
SatI GCNGC 7 cut(s) 41, 53, 56, 59, 62, 98, 388
Sau3AI GATC 3 cut(s) 156, 292, 422
Sau96I GGNCC 2 cut(s) 324, 389
SchI GAGTC 1 cut(s) 438
ScrFI CCNGG 2 cut(s) 188, 498
SduI GDGCHC 1 cut(s) 543
SetI ASST 3 cut(s) 268, 283, 487
SmiMI CAYNNNNRTG 3 cut(s) 117, 288, 468
Sse9I AATT 3 cut(s) 8, 347, 479
SsiI CCGC 5 cut(s) 41, 98, 205, 211, 387
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 186, 496
TaaI ACNGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 357
TasI AATT 3 cut(s) 8, 347, 479
TauI GCSGC 3 cut(s) 43, 100, 390
TfiI GAWTC 1 cut(s) 366
TseI GCWGC 4 cut(s) 52, 55, 58, 61
TspDTI ATGAA 4 cut(s) 130, 452, 491, 506
XapI RAATTY 1 cut(s) 347
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.