Prupe.1G252500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016320
Physical Location & Seq
Forward (+)
26366381 .. 26367827
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G252500.1

Sequence Viewer

Length: 498 bp
ATGTCCTCCTTGCAGCCTCAGCAACAACAGCCTGCTCTTGTTTACCCAAACAACATGAGAGGACAGCCGTCGTCTTCCCACCATTCAAATGGCTCATTTGGGACGGTTTTCATTGTGCTGGCCGTTATAGTTGTCATATCAGCCATTGCTTGCTTTCTTGGACGGCTCTGCAACCGCCGCCTCCACAACTCAAAACCCAACAAGCAACCGGCGCACAACTTTCGTCCCAGCAAAAAAGAAGCTGCAGTGAATCATAACCACATGGAGTTTGGGAATAATAATAATCCCAGCTTTCGTGCCCCAAAAGACGCAGACATCGAATTCGGGTTTGACAAGAAAATCCCAAATGGCAATGGCAGCGGATCAGAGAGCAGAGGATACATGAACAATCACAGCAAACCACATCATGGAAATAGTGATCATCACATTCACATGAAAGGTGAAATGAAGCAGCCTGGTGATCATATTGTGATTGGAGAGCCCCGAGCCACTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.17

Weight (kDa)

9.74

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34300
malus_domestica MD13G1093000.v1.1 MD16G1094000.v1.1
prunus_persica Prupe.1G252500_v2.0.a1
pyrus_communis pycom13g08100 pycom16g08000
rosa_chinensis RchiOBHm_Chr4g0443731
rosa_laevigata RLG00000005895
rosa_multiflora Rmu_sc0001426.1_g000003
rosa_roxburghii Rroxscaffold_5G00384300
rosa_samantha Rh4AG407000 Rh4BG417900 Rh4CG432100 Rh4DG413200
rosa_wichuraiana Rw4G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 407
AciI CCGC 3 cut(s) 175, 178, 360
AclWI GGATC 1 cut(s) 370
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 1 cut(s) 87
AjnI CCWGG 1 cut(s) 454
AluBI AGCT 2 cut(s) 242, 291
AluI AGCT 2 cut(s) 242, 291
AlwI GGATC 1 cut(s) 370
Ama87I CYCGRG 1 cut(s) 483
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 4 cut(s) 13, 242, 357, 451
ApoI RAATTY 1 cut(s) 320
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AspLEI GCGC 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 452, 470
AvaI CYCGRG 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 483
BbsI GAAGAC 1 cut(s) 66
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 4 cut(s) 25, 229, 369, 463
BceAI ACGGC 3 cut(s) 52, 107, 179
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 1 cut(s) 456
BciVI GTATCC 1 cut(s) 371
BclI TGATCA 2 cut(s) 418, 460
BfmI CTRYAG 1 cut(s) 243
BfuI GTATCC 1 cut(s) 371
BisI GCNGC 5 cut(s) 14, 178, 243, 358, 452
BlsI GCNGC 5 cut(s) 15, 179, 244, 359, 453
Bme1390I CCNGG 1 cut(s) 456
BmeT110I CYCGRG 1 cut(s) 483
BmrFI CCNGG 1 cut(s) 456
BoxI GACNNNNGTC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 496
Bse3DI GCAATG 2 cut(s) 144, 358
BseBI CCWGG 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMI GCAATG 2 cut(s) 144, 358
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 496
BseSI GKGCMC 1 cut(s) 301
BseXI GCAGC 4 cut(s) 25, 229, 369, 463
BseYI CCCAGC 2 cut(s) 227, 287
BshFI GGCC 1 cut(s) 122
BsiHKCI CYCGRG 1 cut(s) 483
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 2 cut(s) 115, 210
BslI CCNNNNNNNGG 1 cut(s) 407
BsmFI GGGAC 2 cut(s) 115, 210
BsnI GGCC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 301, 483
Bsp143I GATC 3 cut(s) 362, 418, 460
BspACI CCGC 3 cut(s) 175, 178, 360
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 31
BspMAI CTGCAG 1 cut(s) 247
BspPI GGATC 1 cut(s) 370
BsrDI GCAATG 2 cut(s) 144, 358
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 1 cut(s) 496
BssAI RCCGGY 1 cut(s) 208
BssMI GATC 3 cut(s) 362, 418, 460
Bst2UI CCWGG 1 cut(s) 456
Bst4CI ACNGT 1 cut(s) 106
BstC8I GCNNGC 3 cut(s) 33, 120, 151
BstDEI CTNAG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 3 cut(s) 365, 421, 463
BstMBI GATC 3 cut(s) 362, 418, 460
BstMWI GCNNNNNNNGC 5 cut(s) 19, 28, 177, 211, 357
BstNI CCWGG 1 cut(s) 456
BstPAI GACNNNNGTC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 454
BstSFI CTRYAG 1 cut(s) 243
BstSLI GKGCMC 1 cut(s) 301
BstV1I GCAGC 4 cut(s) 25, 229, 369, 463
BstV2I GAAGAC 1 cut(s) 66
BstXI CCANNNNNNTGG 1 cut(s) 89
BsuI GTATCC 1 cut(s) 371
BsuRI GGCC 1 cut(s) 122
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 252, 489
Cac8I GCNNGC 3 cut(s) 33, 120, 151
CfoI GCGC 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 208
CseI GACGC 1 cut(s) 317
CviAII CATG 5 cut(s) 55, 262, 382, 407, 433
DdeI CTNAG 1 cut(s) 18
DpnI GATC 3 cut(s) 364, 420, 462
DpnII GATC 3 cut(s) 362, 418, 460
EaeI YGGCCR 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 483
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 483
FaeI CATG 5 cut(s) 58, 265, 385, 410, 436
FaiI YATR 9 cut(s) 56, 128, 137, 255, 263, 383, 408, 434, 465
FaqI GGGAC 2 cut(s) 115, 210
FatI CATG 5 cut(s) 54, 261, 381, 406, 432
FbaI TGATCA 2 cut(s) 418, 460
Fnu4HI GCNGC 5 cut(s) 14, 178, 243, 358, 452
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 5 cut(s) 14, 178, 243, 358, 452
GlaI GCGC 1 cut(s) 213
GluI GCNGC 5 cut(s) 14, 178, 243, 358, 452
GsaI CCCAGC 2 cut(s) 231, 291
HaeIII GGCC 1 cut(s) 122
HapII CCGG 1 cut(s) 209
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 214
Hin1II CATG 5 cut(s) 58, 265, 385, 410, 436
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 1 cut(s) 250
HpaII CCGG 1 cut(s) 209
HphI GGTGA 2 cut(s) 452, 470
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 367
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 13, 171, 245
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 28, 177, 211, 357
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 5 cut(s) 58, 265, 385, 410, 436
HspAI GCGC 1 cut(s) 212
Ksp22I TGATCA 2 cut(s) 418, 460
Kzo9I GATC 3 cut(s) 362, 418, 460
LpnPI CCDG 8 cut(s) 45, 104, 222, 241, 301, 441, 468, 477
Lsp1109I GCAGC 4 cut(s) 25, 229, 369, 463
MalI GATC 3 cut(s) 364, 420, 462
MboI GATC 3 cut(s) 362, 418, 460
MboII GAAGA 1 cut(s) 66
MhlI GDGCHC 2 cut(s) 301, 483
MluCI AATT 1 cut(s) 320
MnlI CCTC 5 cut(s) 16, 27, 53, 191, 368
MslI CAYNNNNRTG 2 cut(s) 87, 431
MspA1I CMGCKG 1 cut(s) 360
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 456
MvaI CCWGG 1 cut(s) 456
MwoI GCNNNNNNNGC 5 cut(s) 19, 28, 177, 211, 357
NdeII GATC 3 cut(s) 362, 418, 460
NlaIII CATG 5 cut(s) 58, 265, 385, 410, 436
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PfeI GAWTC 1 cut(s) 250
PflMI CCANNNNNTGG 1 cut(s) 407
PkrI GCNGC 5 cut(s) 15, 179, 244, 359, 453
PshAI GACNNNNGTC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 454
PspFI CCCAGC 2 cut(s) 227, 287
PspGI CCWGG 1 cut(s) 454
PstI CTGCAG 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 87, 431
SatI GCNGC 5 cut(s) 14, 178, 243, 358, 452
Sau3AI GATC 3 cut(s) 362, 418, 460
ScrFI CCNGG 1 cut(s) 456
SduI GDGCHC 2 cut(s) 301, 483
SetI ASST 3 cut(s) 244, 293, 442
SfcI CTRYAG 1 cut(s) 243
SmiMI CAYNNNNRTG 2 cut(s) 87, 431
Sse9I AATT 1 cut(s) 320
SsiI CCGC 3 cut(s) 175, 178, 360
StyD4I CCNGG 1 cut(s) 454
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 318
TasI AATT 1 cut(s) 320
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 1 cut(s) 250
TscAI CASTG 2 cut(s) 252, 496
TseI GCWGC 4 cut(s) 13, 242, 357, 451
TspDTI ATGAA 4 cut(s) 100, 398, 449, 461
TspRI CASTG 2 cut(s) 252, 496
Van91I CCANNNNNTGG 1 cut(s) 407
XapI RAATTY 1 cut(s) 320
XcmI CCANNNNNNNNNTGG 2 cut(s) 86, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.