Rh4BG417900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0016320
Physical Location & Seq
Forward (+)
56501117 .. 56501548
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG417900.1

Sequence Viewer

Length: 432 bp
ATGTCCCAATTCCAACCACAACAACTGCAACAGCCACAGCCACAGCCGCTACCACAGCAGCAGCAGCAGCCGGTTCTTGTTTACCCTAACAATGTGAACAAGCCGCCACCTTCCCACCATTCCAATGGGTCATTTGGCTCGGTTTTCATTGTCCTAGCCGTGATCGTGGTCATCTCAGGCATTGCTTGCTTCCTGGGAAGACTCTGCAACCGCGACCGCTCCCACAAATCCAAACACAATAAGCAGTCCAAGAACAAGGGGAACAACAAAGCTCATCCCAAAGAAGGTCATCATGGTGATCATGTTGAGTTTGGGAGCCAACATTTCCGGCCCAAAGAAGGAACTGACATTGAATTCGGGTTCGACAAGAGAATCCCAAGTGGCAAGCCCAGCGGCCCAAACTACACCAGCAGAGAGAGCAGAGCAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.92

Weight (kDa)

9.95

Isoelectric Point (pI)

69.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34300
malus_domestica MD13G1093000.v1.1 MD16G1094000.v1.1
prunus_persica Prupe.1G252500_v2.0.a1
pyrus_communis pycom13g08100 pycom16g08000
rosa_chinensis RchiOBHm_Chr4g0443731
rosa_laevigata RLG00000005895
rosa_multiflora Rmu_sc0001426.1_g000003
rosa_roxburghii Rroxscaffold_5G00384300
rosa_samantha Rh4AG407000 Rh4BG417900 Rh4CG432100 Rh4DG413200
rosa_wichuraiana Rw4G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 219
AccII CGCG 1 cut(s) 213
AciI CCGC 5 cut(s) 47, 104, 211, 217, 393
AcsI RAATTY 1 cut(s) 353
AfiI CCNNNNNNNGG 2 cut(s) 284, 338
AgsI TTSAA 1 cut(s) 353
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
AoxI GGCC 2 cut(s) 329, 394
ApeKI GCWGC 4 cut(s) 58, 61, 64, 67
ApoI RAATTY 1 cut(s) 353
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AspS9I GGNCC 2 cut(s) 330, 395
AsuHPI GGTGA 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 205
BbvI GCAGC 4 cut(s) 70, 73, 76, 79
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 194
BclI TGATCA 1 cut(s) 298
BfaI CTAG 1 cut(s) 155
BisI GCNGC 7 cut(s) 47, 59, 62, 65, 68, 104, 394
BlsI GCNGC 7 cut(s) 48, 60, 63, 66, 69, 105, 395
Bme1390I CCNGG 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 330, 395
BmiI GGNNCC 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 338
Bse118I RCCGGY 1 cut(s) 70
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 2 cut(s) 284, 338
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 189
BseXI GCAGC 4 cut(s) 70, 73, 76, 79
BseYI CCCAGC 1 cut(s) 389
Bsh1236I CGCG 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 2 cut(s) 331, 396
BsiEI CGRYCG 1 cut(s) 217
BsiSI CCGG 2 cut(s) 71, 328
BslI CCNNNNNNNGG 2 cut(s) 284, 338
BsnI GGCC 2 cut(s) 331, 396
Bsp143I GATC 2 cut(s) 162, 298
BspACI CCGC 5 cut(s) 47, 104, 211, 217, 393
BspANI GGCC 2 cut(s) 331, 396
BspCNI CTCAG 1 cut(s) 188
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 2 cut(s) 162, 298
Bst2UI CCWGG 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 187, 386
BstDEI CTNAG 1 cut(s) 175
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 1 cut(s) 213
BstKTI GATC 2 cut(s) 165, 301
BstMBI GATC 2 cut(s) 162, 298
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 7 cut(s) 46, 55, 64, 67, 186, 390, 417
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 4 cut(s) 70, 73, 76, 79
BstV2I GAAGAC 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 125
BsuRI GGCC 2 cut(s) 331, 396
BtsCI GGATG 1 cut(s) 274
Cac8I GCNNGC 2 cut(s) 187, 386
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 330, 395
CviAII CATG 2 cut(s) 293, 302
DdeI CTNAG 1 cut(s) 175
DpnI GATC 2 cut(s) 164, 300
DpnII GATC 2 cut(s) 162, 298
EcoRI GAATTC 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 296, 305
FaiI YATR 2 cut(s) 294, 303
FatI CATG 2 cut(s) 292, 301
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 7 cut(s) 47, 59, 62, 65, 68, 104, 394
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 7 cut(s) 47, 59, 62, 65, 68, 104, 394
FspBI CTAG 1 cut(s) 155
GluI GCNGC 7 cut(s) 47, 59, 62, 65, 68, 104, 394
GsaI CCCAGC 1 cut(s) 393
HaeIII GGCC 2 cut(s) 331, 396
HapII CCGG 2 cut(s) 71, 328
Hin1II CATG 2 cut(s) 296, 305
HinfI GANTC 2 cut(s) 201, 372
HpaII CCGG 2 cut(s) 71, 328
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 2 cut(s) 82, 97
Hpy8I GTNNAC 2 cut(s) 82, 97
HpyAV CCTTC 3 cut(s) 120, 278, 332
HpyCH4V TGCA 2 cut(s) 28, 207
HpyF10VI GCNNNNNNNGC 7 cut(s) 46, 55, 64, 67, 186, 390, 417
HpyF3I CTNAG 1 cut(s) 175
Hsp92II CATG 2 cut(s) 296, 305
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 2 cut(s) 162, 298
LmnI GCTCC 2 cut(s) 224, 315
LpnPI CCDG 8 cut(s) 84, 162, 179, 206, 341, 403, 411, 421
Lsp1109I GCAGC 4 cut(s) 70, 73, 76, 79
MaeI CTAG 1 cut(s) 155
MalI GATC 2 cut(s) 164, 300
MbiI CCGCTC 1 cut(s) 219
MboI GATC 2 cut(s) 162, 298
MboII GAAGA 1 cut(s) 210
MluCI AATT 2 cut(s) 8, 353
MlyI GAGTC 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 37
MslI CAYNNNNRTG 2 cut(s) 123, 294
MspA1I CMGCKG 1 cut(s) 393
MspI CCGG 2 cut(s) 71, 328
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 7 cut(s) 46, 55, 64, 67, 186, 390, 417
NdeII GATC 2 cut(s) 162, 298
NlaIII CATG 2 cut(s) 296, 305
NlaIV GGNNCC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 372
PkrI GCNGC 7 cut(s) 48, 60, 63, 66, 69, 105, 395
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 317
PspPI GGNCC 2 cut(s) 330, 395
RseI CAYNNNNRTG 2 cut(s) 123, 294
SatI GCNGC 7 cut(s) 47, 59, 62, 65, 68, 104, 394
Sau3AI GATC 2 cut(s) 162, 298
Sau96I GGNCC 2 cut(s) 330, 395
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 194
SetI ASST 3 cut(s) 112, 274, 289
SmiMI CAYNNNNRTG 2 cut(s) 123, 294
Sse9I AATT 2 cut(s) 8, 353
SsiI CCGC 5 cut(s) 47, 104, 211, 217, 393
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 192
TaqI TCGA 1 cut(s) 363
TasI AATT 2 cut(s) 8, 353
TauI GCSGC 3 cut(s) 49, 106, 396
TfiI GAWTC 1 cut(s) 372
TseI GCWGC 4 cut(s) 58, 61, 64, 67
TspDTI ATGAA 1 cut(s) 136
XapI RAATTY 1 cut(s) 353
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.