MD16G1094000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0016320
Physical Location & Seq
Reverse (-)
6502418 .. 6502966
549 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1094000.v1.1.491

Sequence Viewer

Length: 549 bp
ATGTCCTCCTTGCAGCCCCAGCAGCAGCAGCAGCAGCAGCCCGTTGGCCCTGTTCTTGTTTACCCTAACAATGTCAATAAACAGCCTTCATCTTCCCACCATTCAAACGGCTCATTCGGGACCGTTTTCATCGTGCTGGCCGTTATAATCGTCATCTCCGCCATCGCTTGCTTTCTAGGAAGGCTCTGCAACCGCCGCCTCAACAGCTCGAGACCCCATAGGCAACCGCAGCATAACTTTCGTCCCAAGAAAGAAGCTGGCCCTGCTGATGGCGGTGGTGGAGATCATCACATGGAGTTTGGCAGGGCTCCAAGCTTTCGAGCAGGCCCGAAAGTAGCAGACGTCAAATTCGGATTCGATAGGAAAAACCCGAATGGGAATAGCAGCAGCAGAGGAGAGGGCAGAGGATACATGACTCATCATCACAACAAACCACATCATAACGGGAATGGGGAAATGGATCATCACATGAAAGGTGAAATGAACCAGCAACCTGGCGGCGACGGCGAGCATCACGTTGGAATGGGAGATCCCAGAGCCAGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

19.81

Weight (kDa)

9.85

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34300
malus_domestica MD13G1093000.v1.1 MD16G1094000.v1.1
prunus_persica Prupe.1G252500_v2.0.a1
pyrus_communis pycom13g08100 pycom16g08000
rosa_chinensis RchiOBHm_Chr4g0443731
rosa_laevigata RLG00000005895
rosa_multiflora Rmu_sc0001426.1_g000003
rosa_roxburghii Rroxscaffold_5G00384300
rosa_samantha Rh4AG407000 Rh4BG417900 Rh4CG432100 Rh4DG413200
rosa_wichuraiana Rw4G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AatII GACGTC 1 cut(s) 345
AciI CCGC 6 cut(s) 159, 193, 196, 227, 273, 498
AclWI GGATC 2 cut(s) 468, 524
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 1 cut(s) 105
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 3 cut(s) 207, 257, 315
AluI AGCT 3 cut(s) 207, 257, 315
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 2 cut(s) 468, 524
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 4 cut(s) 46, 138, 259, 325
ApoI RAATTY 1 cut(s) 347
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspS9I GGNCC 4 cut(s) 47, 120, 260, 326
AsuHPI GGTGA 1 cut(s) 488
AvaI CYCGRG 1 cut(s) 208
AvaII GGWCC 1 cut(s) 120
BanII GRGCYC 1 cut(s) 310
BccI CCATC 2 cut(s) 170, 263
BceAI ACGGC 3 cut(s) 124, 125, 520
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 495
BciVI GTATCC 1 cut(s) 401
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 1 cut(s) 176
BfuI GTATCC 1 cut(s) 401
Bme1390I CCNGG 1 cut(s) 495
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 208
BmgT120I GGNCC 4 cut(s) 47, 120, 260, 326
BmiI GGNNCC 2 cut(s) 121, 309
BmrFI CCNGG 1 cut(s) 495
BmsI GCATC 1 cut(s) 520
BsaHI GRCGYC 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 540
BseRI GAGGAG 1 cut(s) 408
BseYI CCCAGC 1 cut(s) 18
BshFI GGCC 4 cut(s) 48, 140, 261, 327
BsiHKCI CYCGRG 1 cut(s) 208
BslFI GGGAC 2 cut(s) 133, 228
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 205
BsmFI GGGAC 2 cut(s) 133, 228
BsnI GGCC 4 cut(s) 48, 140, 261, 327
Bso31I GGTCTC 1 cut(s) 205
BsoBI CYCGRG 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 3 cut(s) 283, 460, 529
BspACI CCGC 6 cut(s) 159, 193, 196, 227, 273, 498
BspANI GGCC 4 cut(s) 48, 140, 261, 327
BspLI GGNNCC 2 cut(s) 121, 309
BspPI GGATC 2 cut(s) 468, 524
BspTNI GGTCTC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 540
BssMI GATC 3 cut(s) 283, 460, 529
BssNI GRCGYC 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 124
BstACI GRCGYC 1 cut(s) 342
BstC8I GCNNGC 5 cut(s) 138, 169, 259, 325, 509
BstKTI GATC 3 cut(s) 286, 463, 532
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 3 cut(s) 283, 460, 529
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 493
BstX2I RGATCY 1 cut(s) 529
BstXI CCANNNNNNTGG 1 cut(s) 494
BstYI RGATCY 1 cut(s) 529
BsuI GTATCC 1 cut(s) 401
BsuRI GGCC 4 cut(s) 48, 140, 261, 327
BtgZI GCGATG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 547
Cac8I GCNNGC 5 cut(s) 138, 169, 259, 325, 509
Cfr13I GGNCC 4 cut(s) 47, 120, 260, 326
CviAII CATG 3 cut(s) 292, 412, 469
DpnI GATC 3 cut(s) 285, 462, 531
DpnII GATC 3 cut(s) 283, 460, 529
EaeI YGGCCR 1 cut(s) 138
EciI GGCGGA 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 493
EcoT38I GRGCYC 1 cut(s) 310
FaeI CATG 3 cut(s) 295, 415, 472
FaiI YATR 7 cut(s) 146, 219, 234, 293, 413, 441, 470
FaqI GGGAC 2 cut(s) 133, 228
FatI CATG 3 cut(s) 291, 411, 468
FriOI GRGCYC 1 cut(s) 310
FspBI CTAG 1 cut(s) 176
GsaI CCCAGC 1 cut(s) 22
HaeIII GGCC 4 cut(s) 48, 140, 261, 327
Hin1I GRCGYC 1 cut(s) 342
Hin1II CATG 3 cut(s) 295, 415, 472
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 2 cut(s) 354, 415
HphI GGTGA 1 cut(s) 488
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 353
Hpy188III TCNNGA 2 cut(s) 118, 210
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 2 cut(s) 96, 174
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 2 cut(s) 342, 516
HpyCH4V TGCA 2 cut(s) 13, 189
HpySE526I ACGT 2 cut(s) 342, 516
Hsp92I GRCGYC 1 cut(s) 342
Hsp92II CATG 3 cut(s) 295, 415, 472
Kzo9I GATC 3 cut(s) 283, 460, 529
LmnI GCTCC 1 cut(s) 313
LweI GCATC 1 cut(s) 520
MaeI CTAG 1 cut(s) 176
MaeII ACGT 2 cut(s) 342, 516
MalI GATC 3 cut(s) 285, 462, 531
MboI GATC 3 cut(s) 283, 460, 529
MboII GAAGA 1 cut(s) 84
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 1 cut(s) 347
MlyI GAGTC 1 cut(s) 409
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 5 cut(s) 16, 209, 386, 391, 398
MspR9I CCNGG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 495
NdeII GATC 3 cut(s) 283, 460, 529
NlaIII CATG 3 cut(s) 295, 415, 472
NlaIV GGNNCC 2 cut(s) 121, 309
PaeR7I CTCGAG 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 1 cut(s) 354
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PsiI TTATAA 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 18
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 2 cut(s) 121, 309
PspPI GGNCC 4 cut(s) 47, 120, 260, 326
PsuI RGATCY 1 cut(s) 529
Sau3AI GATC 3 cut(s) 283, 460, 529
Sau96I GGNCC 4 cut(s) 47, 120, 260, 326
SchI GAGTC 1 cut(s) 409
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 1 cut(s) 310
SetI ASST 7 cut(s) 209, 259, 317, 345, 478, 496, 519
SfaNI GCATC 1 cut(s) 520
Sfr274I CTCGAG 1 cut(s) 208
SinI GGWCC 1 cut(s) 120
SlaI CTCGAG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 1 cut(s) 347
SsiI CCGC 6 cut(s) 159, 193, 196, 227, 273, 498
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 493
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 2 cut(s) 345, 519
TaqI TCGA 3 cut(s) 209, 319, 357
TasI AATT 1 cut(s) 347
TauI GCSGC 2 cut(s) 198, 501
TfiI GAWTC 1 cut(s) 354
TscAI CASTG 1 cut(s) 547
TspDTI ATGAA 4 cut(s) 78, 118, 485, 497
TspRI CASTG 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 1 cut(s) 347
XhoI CTCGAG 1 cut(s) 208
XspI CTAG 1 cut(s) 176
ZraI GACGTC 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.