FvH4_4g34590

Equilibrative nucleotide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014468
Physical Location & Seq
Reverse (-)
32285284 .. 32287567
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34590.t1

Sequence Viewer

Length: 1272 bp
ATGGGTTTGGCCGCCAAACCCGCCGAAGAAAACTCCGAATCCAGCCTCCTCCTCCCCACCACAGCCGACGGCGCCGCCGCAGCCAATAAAGTCCCAAACGACCCATTCAACCTGACCTACATCATCTACTTCACTCTGGGCCTCGGCTACCTCCTCCCATGGAACGCTTTCATCACCGCCGTCGATTACTTCACCTACCTCTACCCTGACGCCAGCGTCGACCGCATCTTCTCCGTCGCCTACATGGTCGTCGGCCTCGTCGTGCTTGTCATCATCGTCTTCTACGCCCAGAAGACCGACGCCCACCTCCGGATCAACCTCGGCCTCGGCCTCTTTGTCGTGTCGCTGCTCATCGTGCCTGTGATGGACTTGGTTTACATCCAGGGCCGGGTCGGGTTGTACGACGGGTTCTACGTCACGGTTGCGGCGGTTGCGCTCTCGGGTCTAGCTGATGCTCTGGTCCAAGGCTCGCTGATCGGCGCGGCTGGAGAGTTGCCTGAGAGGTATATGCAGGCGATTGTAGCTGGCACTGCTGGATCAGGAGTGCTTGTTTCCCTTTTGAGGATCCTAACGAAGGCGGTGTATCCACAAACTGGAGAGGGACTGAGAAAGAGTGCAAATCTTTACTTTGCTGTGGGGATAGTGGTTATGGTGATATGCATTGTTTTCTACAATGTGGCACCGAGGATTCCGGTTATGAAGTACTATGCAGAGTTGAAGATTCAGGCTGTGAATGAGGAGAAAGAGCTGAAAGGTCCTCTGACGGGGTCTGCGTTGAGGTCAAATCTGTGGGAGATAGTTGGGAGTGTCAAGTGGTACGGAATCGGCATTCTCCTTATCTACATTGTGACTTTGGCGATATTTCCAGGGTATATTACCGAAGATGTACATTCTGAGCTTCTCAAGGATTGGTACGCGATCATTCTTATTACTGGTTACAATGTGTTTGATCTGGTTGGTAAGGTTCTGACTTCAGTATATCTCCTTGAGAACTCCAAGGTTGCAATTGGCGGCACAATTGCCAGATTGCTATTTTTTCCTTTGTTCTATGGGTGCTTGCACGGCCCAGCATTCTTCAGAACAGAGATTCCAGTGACAATACTGACTTGCCTTTTGGGACTTACTAATGGCTACTTGACGAGCGTGTTGATGATTTTGGCTCCCAAAGTTGTCCCATTACAGCATGCCGAGACTGCAGGGATTTTGATTGTGTTATTCTTGGTTGTGGGTTTGGCTGCTGGTTCAATTGTATCTTGGTTCTGGGTCATCTGA

Protein Analysis

424

Amino Acids

45.86

Weight (kDa)

5.64

Isoelectric Point (pI)

27.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoside_tran PF01733 142 - 423 2.1e-79 Nucleoside transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014468)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70330
fragaria_vesca FvH4_4g34590
malus_domestica MD13G1091100.v1.1 MD16G1091600.v1.1
prunus_persica Prupe.1G254800_v2.0.a1
pyrus_communis pycom13g07930 pycom16g07820
rosa_chinensis RchiOBHm_Chr4g0443961
rosa_laevigata RLG00000005873
rosa_multiflora Rmu_sc0011390.1_g000001
rosa_roxburghii Rroxscaffold_5G00384500
rosa_rugosa Rorug04G0348500
rosa_samantha Rh4AG409200 Rh4BG420300 Rh4CG434300 Rh4DG415300
rosa_wichuraiana Rw4G035150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccB1I GGYRCC 2 cut(s) 71, 679
AccB7I CCANNNNNTGG 1 cut(s) 593
AccI GTMKAC 1 cut(s) 219
AccII CGCG 2 cut(s) 482, 917
AccIII TCCGGA 1 cut(s) 309
AclWI GGATC 4 cut(s) 320, 544, 559, 572
AcoI YGGCCR 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 957, 1060
AcyI GRCGYC 3 cut(s) 72, 210, 300
AfaI GTAC 5 cut(s) 401, 704, 818, 888, 914
AfiI CCNNNNNNNGG 6 cut(s) 309, 388, 561, 574, 593, 764
AgsI TTSAA 3 cut(s) 109, 718, 1245
AjnI CCWGG 2 cut(s) 381, 865
AloI GAACNNNNNNTCC 2 cut(s) 1072, 1104
AluBI AGCT 4 cut(s) 449, 524, 748, 898
AluI AGCT 4 cut(s) 449, 524, 748, 898
Alw26I GTCTC 1 cut(s) 1184
AlwI GGATC 4 cut(s) 320, 544, 559, 572
Ama87I CYCGRG 1 cut(s) 439
Aor13HI TCCGGA 1 cut(s) 309
AoxI GGCC 7 cut(s) 9, 139, 253, 322, 328, 385, 1063
ApeKI GCWGC 3 cut(s) 80, 346, 1235
ArsI GACNNNNNNTTYG 2 cut(s) 1096, 1128
Asp700I GAANNNNTTC 1 cut(s) 167
AspLEI GCGC 3 cut(s) 74, 436, 482
AspS9I GGNCC 5 cut(s) 139, 385, 460, 755, 1064
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 3 cut(s) 166, 184, 664
AvaI CYCGRG 1 cut(s) 439
AvaII GGWCC 2 cut(s) 460, 755
BamHI GGATCC 1 cut(s) 564
BanI GGYRCC 2 cut(s) 71, 679
BbsI GAAGAC 2 cut(s) 271, 299
BbvI GCAGC 3 cut(s) 92, 333, 1222
BccI CCATC 1 cut(s) 358
BceAI ACGGC 3 cut(s) 85, 164, 1078
BciT130I CCWGG 2 cut(s) 383, 867
BciVI GTATCC 1 cut(s) 594
BcnI CCSGG 1 cut(s) 389
BcoDI GTCTC 1 cut(s) 1184
BfaI CTAG 1 cut(s) 446
BfmI CTRYAG 1 cut(s) 1194
BfoI RGCGCY 1 cut(s) 75
BfuI GTATCC 1 cut(s) 594
BisI GCNGC 9 cut(s) 12, 75, 78, 81, 347, 426, 483, 1012, 1236
BlsI GCNGC 9 cut(s) 13, 76, 79, 82, 348, 427, 484, 1013, 1237
BmcAI AGTACT 1 cut(s) 704
Bme1390I CCNGG 3 cut(s) 383, 389, 867
Bme18I GGWCC 2 cut(s) 460, 755
BmeT110I CYCGRG 1 cut(s) 439
BmgT120I GGNCC 5 cut(s) 139, 385, 460, 755, 1064
BmiI GGNNCC 4 cut(s) 73, 566, 681, 1161
BmrFI CCNGG 3 cut(s) 383, 389, 867
BmsI GCATC 2 cut(s) 234, 442
BpiI GAAGAC 2 cut(s) 271, 299
BpmI CTGGAG 2 cut(s) 507, 615
BpuEI CTTGAG 2 cut(s) 887, 1007
BpuMI CCSGG 1 cut(s) 389
BsaHI GRCGYC 3 cut(s) 72, 210, 300
BsaJI CCNNGG 9 cut(s) 142, 158, 319, 325, 382, 463, 683, 866, 996
BsaWI WCCGGW 2 cut(s) 309, 691
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 6 cut(s) 309, 388, 561, 574, 593, 764
Bse1I ACTGG 3 cut(s) 598, 937, 1091
BseAI TCCGGA 1 cut(s) 309
BseBI CCWGG 2 cut(s) 383, 867
BseDI CCNNGG 9 cut(s) 142, 158, 319, 325, 382, 463, 683, 866, 996
BseGI GGATG 1 cut(s) 378
BseLI CCNNNNNNNGG 6 cut(s) 309, 388, 561, 574, 593, 764
BseMII CTCAG 3 cut(s) 489, 596, 885
BseNI ACTGG 3 cut(s) 598, 937, 1091
BseRI GAGGAG 4 cut(s) 38, 41, 143, 752
BseXI GCAGC 3 cut(s) 92, 333, 1222
BseYI CCCAGC 1 cut(s) 1066
Bsh1236I CGCG 2 cut(s) 482, 917
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 7 cut(s) 11, 141, 255, 324, 330, 387, 1065
BshNI GGYRCC 2 cut(s) 71, 679
BsiEI CGRYCG 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 439
BsiSI CCGG 3 cut(s) 310, 388, 692
BslFI GGGAC 4 cut(s) 77, 615, 1131, 1157
BslI CCNNNNNNNGG 6 cut(s) 309, 388, 561, 574, 593, 764
BsmAI GTCTC 1 cut(s) 1184
BsmFI GGGAC 4 cut(s) 77, 615, 1131, 1157
BsmI GAATGC 2 cut(s) 828, 1070
BsnI GGCC 7 cut(s) 11, 141, 255, 324, 330, 387, 1065
BsoBI CYCGRG 1 cut(s) 439
Bsp13I TCCGGA 1 cut(s) 309
Bsp1407I TGTACA 1 cut(s) 886
Bsp143I GATC 6 cut(s) 312, 474, 536, 564, 918, 949
Bsp19I CCATGG 1 cut(s) 158
BspANI GGCC 7 cut(s) 11, 141, 255, 324, 330, 387, 1065
BspCNI CTCAG 3 cut(s) 490, 597, 886
BspEI TCCGGA 1 cut(s) 309
BspFNI CGCG 2 cut(s) 482, 917
BspLI GGNNCC 4 cut(s) 73, 566, 681, 1161
BspMAI CTGCAG 1 cut(s) 1198
BspPI GGATC 4 cut(s) 320, 544, 559, 572
BspT107I GGYRCC 2 cut(s) 71, 679
BsrGI TGTACA 1 cut(s) 886
BsrI ACTGG 3 cut(s) 598, 937, 1091
BssECI CCNNGG 9 cut(s) 142, 158, 319, 325, 382, 463, 683, 866, 996
BssMI GATC 6 cut(s) 312, 474, 536, 564, 918, 949
BssNI GRCGYC 3 cut(s) 72, 210, 300
BssT1I CCWWGG 3 cut(s) 158, 463, 996
Bst2UI CCWGG 2 cut(s) 383, 867
Bst4CI ACNGT 1 cut(s) 421
BstACI GRCGYC 3 cut(s) 72, 210, 300
BstAUI TGTACA 1 cut(s) 886
BstC8I GCNNGC 6 cut(s) 214, 470, 513, 526, 1058, 1185
BstDEI CTNAG 3 cut(s) 498, 605, 894
BstDSI CCRYGG 1 cut(s) 158
BstENI CCTNNNNNAGG 1 cut(s) 572
BstF5I GGATG 1 cut(s) 378
BstFNI CGCG 2 cut(s) 482, 917
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 3 cut(s) 74, 436, 482
BstKTI GATC 6 cut(s) 315, 477, 539, 567, 921, 952
BstMAI GTCTC 1 cut(s) 1184
BstMBI GATC 6 cut(s) 312, 474, 536, 564, 918, 949
BstMCI CGRYCG 1 cut(s) 223
BstNI CCWGG 2 cut(s) 383, 867
BstNSI RCATGY 1 cut(s) 1187
BstSCI CCNGG 3 cut(s) 381, 387, 865
BstSFI CTRYAG 1 cut(s) 1194
BstUI CGCG 2 cut(s) 482, 917
BstV1I GCAGC 3 cut(s) 92, 333, 1222
BstV2I GAAGAC 2 cut(s) 271, 299
BstX2I RGATCY 1 cut(s) 564
BstYI RGATCY 1 cut(s) 564
BsuI GTATCC 1 cut(s) 594
BsuRI GGCC 7 cut(s) 11, 141, 255, 324, 330, 387, 1065
BtgI CCRYGG 1 cut(s) 158
BtsCI GGATG 1 cut(s) 378
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 528, 1098
Cac8I GCNNGC 6 cut(s) 214, 470, 513, 526, 1058, 1185
CfoI GCGC 3 cut(s) 74, 436, 482
Cfr13I GGNCC 5 cut(s) 139, 385, 460, 755, 1064
CseI GACGC 3 cut(s) 205, 218, 308
Csp6I GTAC 5 cut(s) 400, 703, 817, 887, 913
CviAII CATG 3 cut(s) 159, 244, 1184
CviQI GTAC 5 cut(s) 400, 703, 817, 887, 913
DdeI CTNAG 3 cut(s) 498, 605, 894
DinI GGCGCC 1 cut(s) 73
DpnI GATC 6 cut(s) 314, 476, 538, 566, 920, 951
DpnII GATC 6 cut(s) 312, 474, 536, 564, 918, 949
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 9
Eco130I CCWWGG 3 cut(s) 158, 463, 996
Eco47I GGWCC 2 cut(s) 460, 755
Eco57I CTGAAG 2 cut(s) 957, 1060
Eco88I CYCGRG 1 cut(s) 439
EcoNI CCTNNNNNAGG 1 cut(s) 572
EcoO109I RGGNCCY 1 cut(s) 755
EcoRII CCWGG 2 cut(s) 381, 865
EcoT14I CCWWGG 3 cut(s) 158, 463, 996
EcoT22I ATGCAT 1 cut(s) 662
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 3 cut(s) 158, 463, 996
FaeI CATG 3 cut(s) 162, 247, 1187
FaqI GGGAC 4 cut(s) 77, 615, 1131, 1157
FatI CATG 3 cut(s) 158, 243, 1183
FauI CCCGC 1 cut(s) 28
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 9 cut(s) 12, 75, 78, 81, 347, 426, 483, 1012, 1236
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 9 cut(s) 12, 75, 78, 81, 347, 426, 483, 1012, 1236
FspBI CTAG 1 cut(s) 446
GlaI GCGC 3 cut(s) 73, 435, 481
GluI GCNGC 9 cut(s) 12, 75, 78, 81, 347, 426, 483, 1012, 1236
GsaI CCCAGC 1 cut(s) 1070
GsuI CTGGAG 2 cut(s) 507, 615
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 7 cut(s) 11, 141, 255, 324, 330, 387, 1065
HapII CCGG 3 cut(s) 310, 388, 692
HgaI GACGC 3 cut(s) 205, 218, 308
HhaI GCGC 3 cut(s) 74, 436, 482
Hin1I GRCGYC 3 cut(s) 72, 210, 300
Hin1II CATG 3 cut(s) 162, 247, 1187
Hin6I GCGC 3 cut(s) 72, 434, 480
HinP1I GCGC 3 cut(s) 72, 434, 480
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 5 cut(s) 38, 688, 721, 822, 1087
HpaII CCGG 3 cut(s) 310, 388, 692
HphI GGTGA 3 cut(s) 166, 184, 664
Hpy166II GTNNAC 2 cut(s) 220, 376
Hpy188I TCNGA 6 cut(s) 37, 762, 895, 969, 1079, 1271
Hpy188III TCNNGA 2 cut(s) 310, 540
Hpy8I GTNNAC 2 cut(s) 220, 376
Hpy99I CGWCG 8 cut(s) 71, 185, 221, 239, 254, 263, 302, 407
HpyAV CCTTC 1 cut(s) 568
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 7 cut(s) 511, 617, 660, 710, 1004, 1060, 1196
HpyF3I CTNAG 3 cut(s) 498, 605, 894
HpySE526I ACGT 1 cut(s) 414
Hsp92I GRCGYC 3 cut(s) 72, 210, 300
Hsp92II CATG 3 cut(s) 162, 247, 1187
HspAI GCGC 3 cut(s) 72, 434, 480
KasI GGCGCC 1 cut(s) 71
Kpn2I TCCGGA 1 cut(s) 309
Kzo9I GATC 6 cut(s) 312, 474, 536, 564, 918, 949
LmnI GCTCC 1 cut(s) 1165
Lsp1109I GCAGC 3 cut(s) 92, 333, 1222
LweI GCATC 2 cut(s) 234, 442
MaeI CTAG 1 cut(s) 446
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 4 cut(s) 415, 847, 935, 1093
MalI GATC 6 cut(s) 314, 476, 538, 566, 920, 951
MboI GATC 6 cut(s) 312, 474, 536, 564, 918, 949
MboII GAAGA 7 cut(s) 38, 220, 271, 304, 730, 893, 1066
MfeI CAATTG 3 cut(s) 1005, 1017, 1245
MflI RGATCY 1 cut(s) 564
MluCI AATT 3 cut(s) 1005, 1017, 1245
Mly113I GGCGCC 1 cut(s) 72
Mph1103I ATGCAT 1 cut(s) 662
MroI TCCGGA 1 cut(s) 309
MroXI GAANNNNTTC 1 cut(s) 167
MspI CCGG 3 cut(s) 310, 388, 692
MspR9I CCNGG 3 cut(s) 383, 389, 867
MunI CAATTG 3 cut(s) 1005, 1017, 1245
Mva1269I GAATGC 2 cut(s) 828, 1070
MvaI CCWGG 2 cut(s) 383, 867
MvnI CGCG 2 cut(s) 482, 917
NarI GGCGCC 1 cut(s) 72
NciI CCSGG 1 cut(s) 389
NcoI CCATGG 1 cut(s) 158
NdeII GATC 6 cut(s) 312, 474, 536, 564, 918, 949
NlaIII CATG 3 cut(s) 162, 247, 1187
NlaIV GGNNCC 4 cut(s) 73, 566, 681, 1161
NmeAIII GCCGAG 4 cut(s) 123, 300, 306, 1213
NmuCI GTSAC 3 cut(s) 415, 847, 1093
NsiI ATGCAT 1 cut(s) 662
NspI RCATGY 1 cut(s) 1187
PaeI GCATGC 1 cut(s) 1187
PcsI WCGNNNNNNNCGW 6 cut(s) 216, 255, 258, 399, 411, 770
PctI GAATGC 2 cut(s) 828, 1070
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 5 cut(s) 38, 688, 721, 822, 1087
PflFI GACNNNGTC 1 cut(s) 766
PflMI CCANNNNNTGG 1 cut(s) 593
PkrI GCNGC 9 cut(s) 13, 76, 79, 82, 348, 427, 484, 1013, 1237
PluTI GGCGCC 1 cut(s) 75
PpuMI RGGWCCY 1 cut(s) 755
Psp5II RGGWCCY 1 cut(s) 755
Psp6I CCWGG 2 cut(s) 381, 865
PspFI CCCAGC 1 cut(s) 1066
PspGI CCWGG 2 cut(s) 381, 865
PspN4I GGNNCC 4 cut(s) 73, 566, 681, 1161
PspPI GGNCC 5 cut(s) 139, 385, 460, 755, 1064
PspPPI RGGWCCY 1 cut(s) 755
PsrI GAACNNNNNNTAC 2 cut(s) 392, 424
PstI CTGCAG 1 cut(s) 1198
PsuI RGATCY 1 cut(s) 564
PsyI GACNNNGTC 1 cut(s) 766
RsaI GTAC 5 cut(s) 401, 704, 818, 888, 914
RsaNI GTAC 5 cut(s) 400, 703, 817, 887, 913
SalI GTCGAC 1 cut(s) 218
SatI GCNGC 9 cut(s) 12, 75, 78, 81, 347, 426, 483, 1012, 1236
Sau3AI GATC 6 cut(s) 312, 474, 536, 564, 918, 949
Sau96I GGNCC 5 cut(s) 139, 385, 460, 755, 1064
ScaI AGTACT 1 cut(s) 704
ScrFI CCNGG 3 cut(s) 383, 389, 867
SfaNI GCATC 2 cut(s) 234, 442
SfcI CTRYAG 1 cut(s) 1194
SfoI GGCGCC 1 cut(s) 73
SinI GGWCC 2 cut(s) 460, 755
SmlI CTYRAG 2 cut(s) 902, 986
SmoI CTYRAG 2 cut(s) 902, 986
SphI GCATGC 1 cut(s) 1187
Sse9I AATT 3 cut(s) 1005, 1017, 1245
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 1 cut(s) 446
StyD4I CCNGG 3 cut(s) 381, 387, 865
StyI CCWWGG 3 cut(s) 158, 463, 996
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 1 cut(s) 417
TaqI TCGA 2 cut(s) 183, 219
TaqII GACCGA 1 cut(s) 311
TasI AATT 3 cut(s) 1005, 1017, 1245
TatI WGTACW 2 cut(s) 702, 886
TauI GCSGC 6 cut(s) 14, 77, 80, 428, 485, 1014
TfiI GAWTC 5 cut(s) 38, 688, 721, 822, 1087
TscAI CASTG 2 cut(s) 535, 1098
TseFI GTSAC 3 cut(s) 415, 847, 1093
TseI GCWGC 3 cut(s) 80, 346, 1235
Tsp45I GTSAC 3 cut(s) 415, 847, 1093
TspDTI ATGAA 2 cut(s) 160, 713
TspGWI ACGGA 2 cut(s) 223, 834
TspRI CASTG 2 cut(s) 535, 1098
Tth111I GACNNNGTC 1 cut(s) 766
Van91I CCANNNNNTGG 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 460, 755
XagI CCTNNNNNAGG 1 cut(s) 572
XceI RCATGY 1 cut(s) 1187
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 1 cut(s) 446
ZrmI AGTACT 1 cut(s) 704
Zsp2I ATGCAT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.