Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014468

Physical Location & Seq

Genomic Coordinates Reverse (-)

26569795 .. 26571820

Gene Structure 2026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G254800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGGTTTCAATGCCAAAACCGCCGACGAAGATTCCGAGTCAAGCGTCCTCCTCCCCACCGTATCCGCCACCACACCCAATAAAATCCCAAATGACTCGTTCCACTTGGCCTACATCATCTACTTCACACTTGGTGCTGGGTACCTCCTCCCATGGAACGCTTTCATCACAGCCGTCGATTACTTCGCCTACCTCTACCCAGATGAAAGCGTGGACCGTATATTCGCCGTCGCGTACTTCGTGGTGGGCCTCGTCTGCCTCCTCATCATAATCTTCTACGCCCACAAGTCCGACGCTTATGTCCGGATCAATGTGGGTTTGGGCCTCTTCGTTGTTTGCCTGCTCATCGTGCCCCTCATGGATGTCTTTTACATCAAAGGTCGGGTCGGGTTGTACGACGGGTTTTACGTGACGGTTGCAACGGTTGCGCTTTCGGGTTTGGCTGATGCTTTGGTTCAAGGCTCGCTCATTGGGGCGGCTAGTGAGTTGCCCGAGACTTATATGCAAGCCGTTGTGGCTGGGACTGCCGGTTCAGGAGTCCTTGTTTCTGCTCTGAGGATCATAACTAAGGCTGTATATCCACAAAATGCTGATGGCCTGAGAAAAAGCGCAAACCTTTACTTCGCTGTCGGGATAGTAGTTATGGTCATATGCCTTGTTTTCTACAATGTGGCACCAAGGCTTCCAGTTATGAAGTACTATGCGGAGTTGAAGACTCAGGCTATAAATGAGGAGAAGGAAGAGAATGGTCCTTTGACTCCGTCTGTGTTGAGATCAACTTTGTGGCGCGTAGTTGACAGAGTCAAGTGGTATGGATCTGGCATCATTCTTATCTATGTTGTGACTTTGGCAATATTTCCAGGATATATTACTGAAGATGTACACTCTCAGATTCTCAAGGATTGGTACCCAATCATCCTTATTACAGGCTACAATGTGTTTGATCTTATTGGCAAGTCTCTGACTTCTGTATATCTCCTCGAAAATTCTAAGGTTGCGATCGGCGGCACAGTTATAAGATTGCTCTTCTTTCCTCTCTTCTATGGGTGCTTGCATGGCCCCAAATTCTTCCGAACAGAGATTCCAGTGACAATACTTACTTGCCTTTTGGGACTTACTAATGGCTACTTGACAAGTGTGTTGATGATTTTGGCTCCCAAGATCGTCCAATTACAGCATGCGGAGACTGCAGGGATTGTGATTGTGTTGTTCTTAGTTGTGGGTCTGGCTGTTGGTTCAGTTGTATCTTGGTTCTGGGTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

422

Amino Acids

46.19

Weight (kDa)

5.98

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70330
fragaria_vesca	FvH4_4g34590
malus_domestica	MD13G1091100.v1.1 MD16G1091600.v1.1
prunus_persica	Prupe.1G254800_v2.0.a1
pyrus_communis	pycom13g07930 pycom16g07820
rosa_chinensis	RchiOBHm_Chr4g0443961
rosa_laevigata	RLG00000005873
rosa_multiflora	Rmu_sc0011390.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384500
rosa_rugosa	Rorug04G0348500
rosa_samantha	Rh4AG409200 Rh4BG420300 Rh4CG434300 Rh4DG415300
rosa_wichuraiana	Rw4G035150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1016
AasI	GACNNNNNNGTC	1 cut(s)	299
Acc65I	GGTACC	2 cut(s)	141, 906
AccB1I	GGYRCC	3 cut(s)	141, 673, 906
AccII	CGCG	2 cut(s)	233, 789
AccIII	TCCGGA	1 cut(s)	303
AciI	CCGC	6 cut(s)	21, 66, 476, 704, 1005, 1181
AclWI	GGATC	3 cut(s)	314, 566, 823
AcsI	RAATTY	2 cut(s)	985, 1064
AcuI	CTGAAG	1 cut(s)	894
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	6 cut(s)	143, 236, 395, 698, 882, 908
AgsI	TTSAA	3 cut(s)	10, 458, 712
AjnI	CCWGG	1 cut(s)	859
AloI	GAACNNNNNNTCC	4 cut(s)	514, 546, 1066, 1098
Alw26I	GTCTC	3 cut(s)	488, 963, 1178
AlwI	GGATC	3 cut(s)	314, 566, 823
Ama87I	CYCGRG	1 cut(s)	491
Aor13HI	TCCGGA	1 cut(s)	303
AoxI	GGCC	5 cut(s)	108, 247, 322, 595, 1057
ApoI	RAATTY	2 cut(s)	985, 1064
ArsI	GACNNNNNNTTYG	4 cut(s)	206, 238, 369, 401
Asp700I	GAANNNNTTC	1 cut(s)	161
Asp718I	GGTACC	2 cut(s)	141, 906
AspLEI	GCGC	3 cut(s)	430, 611, 789
AspS9I	GGNCC	5 cut(s)	214, 247, 322, 749, 1058
AvaI	CYCGRG	1 cut(s)	491
AvaII	GGWCC	2 cut(s)	214, 749
BaeGI	GKGCMC	1 cut(s)	354
BanI	GGYRCC	3 cut(s)	141, 673, 906
BbsI	GAAGAC	1 cut(s)	719
BccI	CCATC	1 cut(s)	587
BceAI	ACGGC	3 cut(s)	158, 212, 494
BciT130I	CCWGG	1 cut(s)	861
BciVI	GTATCC	1 cut(s)	73
BcoDI	GTCTC	3 cut(s)	488, 963, 1178
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	1 cut(s)	1188
BfuI	GTATCC	1 cut(s)	73
BglI	GCCNNNNNGGC	1 cut(s)	515
BisI	GCNGC	2 cut(s)	477, 1006
BlsI	GCNGC	2 cut(s)	478, 1007
BmcAI	AGTACT	1 cut(s)	698
Bme1390I	CCNGG	1 cut(s)	861
Bme18I	GGWCC	2 cut(s)	214, 749
BmeT110I	CYCGRG	1 cut(s)	491
BmgT120I	GGNCC	5 cut(s)	214, 247, 322, 749, 1058
BmiI	GGNNCC	5 cut(s)	143, 675, 908, 1060, 1155
BmrFI	CCNGG	1 cut(s)	861
BmsI	GCATC	2 cut(s)	436, 831
BpiI	GAAGAC	1 cut(s)	719
BpuEI	CTTGAG	1 cut(s)	881
BsaAI	YACGTR	1 cut(s)	409
BsaJI	CCNNGG	2 cut(s)	152, 677
BsaWI	WCCGGW	1 cut(s)	303
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	2 cut(s)	686, 1085
BseAI	TCCGGA	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	861
BseDI	CCNNGG	2 cut(s)	152, 677
BseGI	GGATG	2 cut(s)	367, 915
BseMII	CTCAG	4 cut(s)	545, 590, 731, 902
BseNI	ACTGG	2 cut(s)	686, 1085
BseRI	GAGGAG	5 cut(s)	41, 137, 251, 746, 968
BseSI	GKGCMC	1 cut(s)	354
BseYI	CCCAGC	2 cut(s)	137, 518
Bsh1236I	CGCG	2 cut(s)	233, 789
Bsh1285I	CGRYCG	1 cut(s)	1002
BshFI	GGCC	5 cut(s)	110, 249, 324, 597, 1059
BshNI	GGYRCC	3 cut(s)	141, 673, 906
BsiEI	CGRYCG	1 cut(s)	1002
BsiHKCI	CYCGRG	1 cut(s)	491
BsiSI	CCGG	2 cut(s)	304, 528
BslFI	GGGAC	2 cut(s)	535, 1125
BsmAI	GTCTC	3 cut(s)	488, 963, 1178
BsmFI	GGGAC	2 cut(s)	535, 1125
BsnI	GGCC	5 cut(s)	110, 249, 324, 597, 1059
BsoBI	CYCGRG	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp13I	TCCGGA	1 cut(s)	303
Bsp1407I	TGTACA	1 cut(s)	880
Bsp143I	GATC	7 cut(s)	306, 558, 773, 815, 943, 999, 1161
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	6 cut(s)	21, 66, 476, 704, 1005, 1181
BspANI	GGCC	5 cut(s)	110, 249, 324, 597, 1059
BspCNI	CTCAG	4 cut(s)	546, 591, 730, 901
BspEI	TCCGGA	1 cut(s)	303
BspFNI	CGCG	2 cut(s)	233, 789
BspLI	GGNNCC	5 cut(s)	143, 675, 908, 1060, 1155
BspMAI	CTGCAG	1 cut(s)	1192
BspPI	GGATC	3 cut(s)	314, 566, 823
BspQI	GCTCTTC	1 cut(s)	1031
BspT107I	GGYRCC	3 cut(s)	141, 673, 906
BsrFI	RCCGGY	1 cut(s)	527
BsrGI	TGTACA	1 cut(s)	880
BsrI	ACTGG	2 cut(s)	686, 1085
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	2 cut(s)	152, 677
BssMI	GATC	7 cut(s)	306, 558, 773, 815, 943, 999, 1161
BssT1I	CCWWGG	2 cut(s)	152, 677
Bst2UI	CCWGG	1 cut(s)	861
Bst4CI	ACNGT	5 cut(s)	61, 218, 415, 424, 1012
Bst6I	CTCTTC	4 cut(s)	332, 735, 1031, 1043
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	880
BstBAI	YACGTR	1 cut(s)	409
BstC8I	GCNNGC	5 cut(s)	341, 464, 507, 1052, 1179
BstDEI	CTNAG	7 cut(s)	554, 567, 599, 717, 888, 990, 1213
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	2 cut(s)	367, 915
BstFNI	CGCG	2 cut(s)	233, 789
BstHHI	GCGC	3 cut(s)	430, 611, 789
BstKTI	GATC	7 cut(s)	309, 561, 776, 818, 946, 1002, 1164
BstMAI	GTCTC	3 cut(s)	488, 963, 1178
BstMBI	GATC	7 cut(s)	306, 558, 773, 815, 943, 999, 1161
BstMCI	CGRYCG	1 cut(s)	1002
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 255, 349, 425, 515, 524, 1056, 1187
BstNI	CCWGG	1 cut(s)	861
BstNSI	RCATGY	1 cut(s)	1181
BstSCI	CCNGG	1 cut(s)	859
BstSFI	CTRYAG	1 cut(s)	1188
BstSLI	GKGCMC	1 cut(s)	354
BstUI	CGCG	2 cut(s)	233, 789
BstV2I	GAAGAC	1 cut(s)	719
BstX2I	RGATCY	1 cut(s)	815
BstYI	RGATCY	1 cut(s)	815
BsuI	GTATCC	1 cut(s)	73
BsuRI	GGCC	5 cut(s)	110, 249, 324, 597, 1059
BtgI	CCRYGG	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	367, 915
BtsIMutI	CAGTG	1 cut(s)	1092
Cac8I	GCNNGC	5 cut(s)	341, 464, 507, 1052, 1179
CfoI	GCGC	3 cut(s)	430, 611, 789
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	5 cut(s)	214, 247, 322, 749, 1058
CseI	GACGC	2 cut(s)	34, 302
Csp6I	GTAC	6 cut(s)	142, 235, 394, 697, 881, 907
CviAII	CATG	4 cut(s)	153, 358, 1055, 1178
CviQI	GTAC	6 cut(s)	142, 235, 394, 697, 881, 907
DdeI	CTNAG	7 cut(s)	554, 567, 599, 717, 888, 990, 1213
DpnI	GATC	7 cut(s)	308, 560, 775, 817, 945, 1001, 1163
DpnII	GATC	7 cut(s)	306, 558, 773, 815, 943, 999, 1161
DraIII	CACNNNGTG	1 cut(s)	134
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eam1104I	CTCTTC	4 cut(s)	332, 735, 1031, 1043
EarI	CTCTTC	4 cut(s)	332, 735, 1031, 1043
EciI	GGCGGA	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	152, 677
Eco47I	GGWCC	2 cut(s)	214, 749
Eco57I	CTGAAG	1 cut(s)	894
Eco88I	CYCGRG	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	859
EcoT14I	CCWWGG	2 cut(s)	152, 677
ErhI	CCWWGG	2 cut(s)	152, 677
FaeI	CATG	4 cut(s)	156, 361, 1058, 1181
FaqI	GGGAC	2 cut(s)	535, 1125
FatI	CATG	4 cut(s)	152, 357, 1054, 1177
FauNDI	CATATG	1 cut(s)	650
Fnu4HI	GCNGC	2 cut(s)	477, 1006
FokI	GGATG	2 cut(s)	374, 902
Fsp4HI	GCNGC	2 cut(s)	477, 1006
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	3 cut(s)	429, 610, 788
GluI	GCNGC	2 cut(s)	477, 1006
GsaI	CCCAGC	2 cut(s)	141, 522
HaeIII	GGCC	5 cut(s)	110, 249, 324, 597, 1059
HapII	CCGG	2 cut(s)	304, 528
HgaI	GACGC	2 cut(s)	34, 302
HhaI	GCGC	3 cut(s)	430, 611, 789
Hin1II	CATG	4 cut(s)	156, 361, 1058, 1181
Hin6I	GCGC	3 cut(s)	428, 609, 787
HinP1I	GCGC	3 cut(s)	428, 609, 787
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HinfI	GANTC	9 cut(s)	32, 38, 95, 537, 715, 757, 801, 892, 1081
HpaII	CCGG	2 cut(s)	304, 528
Hpy166II	GTNNAC	3 cut(s)	214, 796, 883
Hpy188I	TCNGA	7 cut(s)	37, 292, 555, 891, 963, 1073, 1265
Hpy188III	TCNNGA	3 cut(s)	304, 534, 631
Hpy8I	GTNNAC	3 cut(s)	214, 796, 883
Hpy99I	CGWCG	5 cut(s)	29, 179, 233, 296, 401
HpyAV	CCTTC	1 cut(s)	730
HpyCH4III	ACNGT	5 cut(s)	61, 218, 415, 424, 1012
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	4 cut(s)	419, 505, 1054, 1190
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 255, 349, 425, 515, 524, 1056, 1187
HpyF3I	CTNAG	7 cut(s)	554, 567, 599, 717, 888, 990, 1213
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	4 cut(s)	156, 361, 1058, 1181
HspAI	GCGC	3 cut(s)	428, 609, 787
Kpn2I	TCCGGA	1 cut(s)	303
KpnI	GGTACC	2 cut(s)	145, 910
Kzo9I	GATC	7 cut(s)	306, 558, 773, 815, 943, 999, 1161
LguI	GCTCTTC	1 cut(s)	1031
LmnI	GCTCC	1 cut(s)	1159
LweI	GCATC	2 cut(s)	436, 831
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	3 cut(s)	409, 841, 1087
MalI	GATC	7 cut(s)	308, 560, 775, 817, 945, 1001, 1163
MboI	GATC	7 cut(s)	306, 558, 773, 815, 943, 999, 1161
MboII	GAAGA	9 cut(s)	41, 265, 319, 724, 752, 887, 1018, 1030, 1060
MflI	RGATCY	1 cut(s)	815
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	3 cut(s)	985, 1064, 1169
MlyI	GAGTC	6 cut(s)	47, 89, 546, 709, 751, 810
MmeI	TCCRAC	1 cut(s)	315
MroI	TCCGGA	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	161
MspI	CCGG	2 cut(s)	304, 528
MspR9I	CCNGG	1 cut(s)	861
MvaI	CCWGG	1 cut(s)	861
MvnI	CGCG	2 cut(s)	233, 789
MwoI	GCNNNNNNNGC	8 cut(s)	20, 255, 349, 425, 515, 524, 1056, 1187
NcoI	CCATGG	1 cut(s)	152
NdeI	CATATG	1 cut(s)	650
NdeII	GATC	7 cut(s)	306, 558, 773, 815, 943, 999, 1161
NlaIII	CATG	4 cut(s)	156, 361, 1058, 1181
NlaIV	GGNNCC	5 cut(s)	143, 675, 908, 1060, 1155
NmuCI	GTSAC	3 cut(s)	409, 841, 1087
NspI	RCATGY	1 cut(s)	1181
PaeI	GCATGC	1 cut(s)	1181
PciSI	GCTCTTC	1 cut(s)	1031
PcsI	WCGNNNNNNNCGW	4 cut(s)	33, 237, 393, 405
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	32, 892, 1081
PflFI	GACNNNGTC	2 cut(s)	760, 800
PfoI	TCCNGGA	1 cut(s)	859
PkrI	GCNGC	2 cut(s)	478, 1007
Ple19I	CGATCG	1 cut(s)	1002
PleI	GAGTC	6 cut(s)	46, 89, 545, 709, 751, 809
PpsI	GAGTC	6 cut(s)	46, 89, 545, 709, 751, 809
Ppu21I	YACGTR	1 cut(s)	409
PsiI	TTATAA	1 cut(s)	1016
Psp6I	CCWGG	1 cut(s)	859
PspFI	CCCAGC	2 cut(s)	137, 518
PspGI	CCWGG	1 cut(s)	859
PspN4I	GGNNCC	5 cut(s)	143, 675, 908, 1060, 1155
PspPI	GGNCC	5 cut(s)	214, 247, 322, 749, 1058
PstI	CTGCAG	1 cut(s)	1192
PsuI	RGATCY	1 cut(s)	815
PsyI	GACNNNGTC	2 cut(s)	760, 800
PvuI	CGATCG	1 cut(s)	1002
RsaI	GTAC	6 cut(s)	143, 236, 395, 698, 882, 908
RsaNI	GTAC	6 cut(s)	142, 235, 394, 697, 881, 907
SapI	GCTCTTC	1 cut(s)	1031
SatI	GCNGC	2 cut(s)	477, 1006
Sau3AI	GATC	7 cut(s)	306, 558, 773, 815, 943, 999, 1161
Sau96I	GGNCC	5 cut(s)	214, 247, 322, 749, 1058
ScaI	AGTACT	1 cut(s)	698
SchI	GAGTC	6 cut(s)	47, 89, 546, 709, 751, 810
ScrFI	CCNGG	1 cut(s)	861
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	6 cut(s)	147, 195, 382, 411, 618, 996
SfaNI	GCATC	2 cut(s)	436, 831
SfcI	CTRYAG	1 cut(s)	1188
SinI	GGWCC	2 cut(s)	214, 749
SmlI	CTYRAG	1 cut(s)	896
SmoI	CTYRAG	1 cut(s)	896
SphI	GCATGC	1 cut(s)	1181
Sse9I	AATT	3 cut(s)	985, 1064, 1169
SsiI	CCGC	6 cut(s)	21, 66, 476, 704, 1005, 1181
SspI	AATATT	1 cut(s)	855
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	1 cut(s)	859
StyI	CCWWGG	2 cut(s)	152, 677
TaaI	ACNGT	5 cut(s)	61, 218, 415, 424, 1012
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	2 cut(s)	177, 981
TasI	AATT	3 cut(s)	985, 1064, 1169
TatI	WGTACW	2 cut(s)	696, 880
TauI	GCSGC	2 cut(s)	479, 1008
TfiI	GAWTC	3 cut(s)	32, 892, 1081
TscAI	CASTG	1 cut(s)	1092
TseFI	GTSAC	3 cut(s)	409, 841, 1087
Tsp45I	GTSAC	3 cut(s)	409, 841, 1087
TspDTI	ATGAA	3 cut(s)	154, 219, 707
TspGWI	ACGGA	1 cut(s)	750
TspRI	CASTG	1 cut(s)	1092
Tth111I	GACNNNGTC	2 cut(s)	760, 800
VpaK11BI	GGWCC	2 cut(s)	214, 749
XapI	RAATTY	2 cut(s)	985, 1064
XceI	RCATGY	1 cut(s)	1181
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	480
ZrmI	AGTACT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.