Rmu_sc0011390.1_g000001

Equilibrative nucleotide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011390.1
OG0014468
Physical Location & Seq
Forward (+)
383 .. 2066
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011390.1_g000001.1.cds

Sequence Viewer

Length: 1281 bp
atgggtttagccgccaaaacccccgaagaaaactccgaatcgagtctcctcctccccaccaccaccccctcccccgacggcgccgccgcacccaataaagtcccaaacgacccttttcatctgacctacatcatctacttcaccctgggcctcggctacctcctcccatggaacgctttcatcacagccgttgattacttcacctacctctaccccgacgccagcgtcgaccgtatattctccgtcgcgtacatgctcgtcggcctcgtcgtccttctgatcatcgtcttctacgcccagaagtccgacgcctacgtccggatcaacgccggcctcgccctgtttgtggtgtcgctgctcatcgtgccggtgctggacttggtctacatccagggccgggtcgggttgtacgccgggttttacgtcacggttgccgcggttgcgctttcgggtttggctgatgctttggtccaaggctcgctgatcggcgcggcgggtgagttacctgagaagtatatgcaggccattgtggctggcactgctggttcaggagtgcttgtttcgtttttgagaatcctaacgaaggctgtatatccgcaaactggtgagggactgaggaaaagtgcaaatctctactttgctgtggggatagtagttatggtcatatgcattgttttctacaatgtggcaccgaggattccggttatgaagtactatgcagagttgaagattcagactataaatgaggagaaagaattgaaaggtcctctgacggggtctgtgttgagatcgactctatggggtgtagttgggagtgtcaagtggtatggtatcggcattctgcttatctacattgtgactttggcaatatttccagggtatattaccgaagatgtgcactctgatcttctcaaggattggtacgcggtcatccttattactggttacaatgtgtttgatctggttggcaaggctctgacttcagtatatctccttgaaaattccaaggttgcaatcggcggcacagttgccagattgctattctttcctctgttctatgggtgcttgcacggccccgcattcttcagaacagagattccagtgacaatactgacttgccttttgggcctgactaatggctacttgacaagtgtgttgatgattttggctcccaaagttgtccaattacaacatgccgagactgcagggattgtgattgtcttgttcttggttgtgggtttggctgccggttcacttgtatcttggttttgggtcatctga

Protein Analysis

426

Amino Acids

46.11

Weight (kDa)

6.11

Isoelectric Point (pI)

27.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014468)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70330
fragaria_vesca FvH4_4g34590
malus_domestica MD13G1091100.v1.1 MD16G1091600.v1.1
prunus_persica Prupe.1G254800_v2.0.a1
pyrus_communis pycom13g07930 pycom16g07820
rosa_chinensis RchiOBHm_Chr4g0443961
rosa_laevigata RLG00000005873
rosa_multiflora Rmu_sc0011390.1_g000001
rosa_roxburghii Rroxscaffold_5G00384500
rosa_rugosa Rorug04G0348500
rosa_samantha Rh4AG409200 Rh4BG420300 Rh4CG434300 Rh4DG415300
rosa_wichuraiana Rw4G035150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 224, 314
AccB1I GGYRCC 2 cut(s) 80, 688
AccI GTMKAC 2 cut(s) 228, 384
AccII CGCG 4 cut(s) 248, 437, 491, 926
AccIII TCCGGA 1 cut(s) 318
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 1000
AcuI CTGAAG 2 cut(s) 966, 1069
AcyI GRCGYC 3 cut(s) 81, 219, 309
AfaI GTAC 4 cut(s) 251, 410, 713, 923
AfiI CCNNNNNNNGG 6 cut(s) 318, 346, 397, 583, 602, 773
AgsI TTSAA 3 cut(s) 727, 760, 998
AjnI CCWGG 3 cut(s) 144, 390, 874
AloI GAACNNNNNNTCC 2 cut(s) 1081, 1113
Alw21I GWGCWC 1 cut(s) 900
Alw26I GTCTC 2 cut(s) 50, 1193
Alw44I GTGCAC 1 cut(s) 896
AlwI GGATC 1 cut(s) 329
Aor13HI TCCGGA 1 cut(s) 318
AoxI GGCC 7 cut(s) 148, 262, 331, 394, 522, 1072, 1126
ApaLI GTGCAC 1 cut(s) 896
ApeKI GCWGC 2 cut(s) 355, 1244
ApoI RAATTY 1 cut(s) 1000
ArsI GACNNNNNNTTYG 2 cut(s) 1105, 1137
Asp700I GAANNNNTTC 1 cut(s) 176
AspLEI GCGC 3 cut(s) 83, 445, 491
AspS9I GGNCC 6 cut(s) 148, 394, 469, 764, 1073, 1126
AsuC2I CCSGG 2 cut(s) 398, 415
AsuHPI GGTGA 4 cut(s) 133, 193, 509, 617
AvaII GGWCC 2 cut(s) 469, 764
BaeGI GKGCMC 1 cut(s) 900
BanI GGYRCC 2 cut(s) 80, 688
BbsI GAAGAC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 900
BbvI GCAGC 2 cut(s) 342, 1231
BceAI ACGGC 3 cut(s) 94, 173, 1087
BciT130I CCWGG 3 cut(s) 146, 392, 876
BclI TGATCA 1 cut(s) 279
BcnI CCSGG 2 cut(s) 398, 415
BcoDI GTCTC 2 cut(s) 50, 1193
BfmI CTRYAG 1 cut(s) 1203
BfoI RGCGCY 1 cut(s) 84
BglI GCCNNNNNGGC 2 cut(s) 530, 1125
BisI GCNGC 8 cut(s) 12, 84, 87, 356, 435, 492, 1021, 1245
BlsI GCNGC 8 cut(s) 13, 85, 88, 357, 436, 493, 1022, 1246
BmcAI AGTACT 1 cut(s) 713
Bme1390I CCNGG 5 cut(s) 146, 392, 398, 415, 876
Bme18I GGWCC 2 cut(s) 469, 764
BmgT120I GGNCC 6 cut(s) 148, 394, 469, 764, 1073, 1126
BmiI GGNNCC 4 cut(s) 82, 690, 1075, 1170
BmrFI CCNGG 5 cut(s) 146, 392, 398, 415, 876
BmsI GCATC 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 280
BplI GAGNNNNNCTC 2 cut(s) 778, 810
BpuEI CTTGAG 1 cut(s) 896
BpuMI CCSGG 2 cut(s) 398, 415
BsaHI GRCGYC 3 cut(s) 81, 219, 309
BsaWI WCCGGW 2 cut(s) 318, 700
BsaXI ACNNNNNCTCC 2 cut(s) 543, 573
Bsc4I CCNNNNNNNGG 6 cut(s) 318, 346, 397, 583, 602, 773
Bse118I RCCGGY 3 cut(s) 329, 367, 1247
Bse1I ACTGG 3 cut(s) 607, 946, 1100
BseAI TCCGGA 1 cut(s) 318
BseBI CCWGG 3 cut(s) 146, 392, 876
BseGI GGATG 2 cut(s) 387, 930
BseLI CCNNNNNNNGG 6 cut(s) 318, 346, 397, 583, 602, 773
BseMII CTCAG 2 cut(s) 498, 605
BseNI ACTGG 3 cut(s) 607, 946, 1100
BseRI GAGGAG 4 cut(s) 38, 41, 152, 761
BseSI GKGCMC 1 cut(s) 900
BseXI GCAGC 2 cut(s) 342, 1231
Bsh1236I CGCG 4 cut(s) 248, 437, 491, 926
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 7 cut(s) 150, 264, 333, 396, 524, 1074, 1128
BshNI GGYRCC 2 cut(s) 80, 688
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 900
BsiSI CCGG 7 cut(s) 319, 330, 368, 397, 414, 701, 1248
BslFI GGGAC 2 cut(s) 86, 624
BslI CCNNNNNNNGG 6 cut(s) 318, 346, 397, 583, 602, 773
BsmAI GTCTC 2 cut(s) 50, 1193
BsmFI GGGAC 2 cut(s) 86, 624
BsmI GAATGC 2 cut(s) 837, 1079
BsnI GGCC 7 cut(s) 150, 264, 333, 396, 524, 1074, 1128
Bsp1286I GDGCHC 1 cut(s) 900
Bsp13I TCCGGA 1 cut(s) 318
Bsp143I GATC 6 cut(s) 279, 321, 483, 788, 904, 958
Bsp19I CCATGG 1 cut(s) 167
BspANI GGCC 7 cut(s) 150, 264, 333, 396, 524, 1074, 1128
BspCNI CTCAG 2 cut(s) 499, 606
BspEI TCCGGA 1 cut(s) 318
BspFNI CGCG 4 cut(s) 248, 437, 491, 926
BspLI GGNNCC 4 cut(s) 82, 690, 1075, 1170
BspMAI CTGCAG 1 cut(s) 1207
BspPI GGATC 1 cut(s) 329
BspT107I GGYRCC 2 cut(s) 80, 688
BsrFI RCCGGY 3 cut(s) 329, 367, 1247
BsrI ACTGG 3 cut(s) 607, 946, 1100
BssAI RCCGGY 3 cut(s) 329, 367, 1247
BssMI GATC 6 cut(s) 279, 321, 483, 788, 904, 958
BssNI GRCGYC 3 cut(s) 81, 219, 309
BssT1I CCWWGG 3 cut(s) 167, 472, 1005
Bst2UI CCWGG 3 cut(s) 146, 392, 876
Bst4CI ACNGT 3 cut(s) 233, 430, 1027
BstACI GRCGYC 3 cut(s) 81, 219, 309
BstC8I GCNNGC 6 cut(s) 223, 331, 479, 522, 535, 1067
BstDEI CTNAG 2 cut(s) 507, 614
BstDSI CCRYGG 2 cut(s) 167, 435
BstENI CCTNNNNNAGG 1 cut(s) 581
BstF5I GGATG 2 cut(s) 387, 930
BstFNI CGCG 4 cut(s) 248, 437, 491, 926
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 3 cut(s) 83, 445, 491
BstKTI GATC 6 cut(s) 282, 324, 486, 791, 907, 961
BstMAI GTCTC 2 cut(s) 50, 1193
BstMBI GATC 6 cut(s) 279, 321, 483, 788, 904, 958
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 8 cut(s) 335, 364, 440, 530, 539, 1071, 1125, 1202
BstNI CCWGG 3 cut(s) 146, 392, 876
BstNSI RCATGY 2 cut(s) 256, 1196
BstSCI CCNGG 5 cut(s) 144, 390, 396, 413, 874
BstSFI CTRYAG 1 cut(s) 1203
BstSLI GKGCMC 1 cut(s) 900
BstUI CGCG 4 cut(s) 248, 437, 491, 926
BstV1I GCAGC 2 cut(s) 342, 1231
BstV2I GAAGAC 1 cut(s) 280
BsuRI GGCC 7 cut(s) 150, 264, 333, 396, 524, 1074, 1128
BtgI CCRYGG 2 cut(s) 167, 435
BtsCI GGATG 2 cut(s) 387, 930
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 2 cut(s) 537, 1107
Cac8I GCNNGC 6 cut(s) 223, 331, 479, 522, 535, 1067
CfoI GCGC 3 cut(s) 83, 445, 491
Cfr10I RCCGGY 3 cut(s) 329, 367, 1247
Cfr13I GGNCC 6 cut(s) 148, 394, 469, 764, 1073, 1126
Cfr42I CCGCGG 1 cut(s) 438
CseI GACGC 3 cut(s) 214, 227, 317
Csp6I GTAC 4 cut(s) 250, 409, 712, 922
CviAII CATG 3 cut(s) 168, 253, 1193
CviQI GTAC 4 cut(s) 250, 409, 712, 922
DdeI CTNAG 2 cut(s) 507, 614
DinI GGCGCC 1 cut(s) 82
DpnI GATC 6 cut(s) 281, 323, 485, 790, 906, 960
DpnII GATC 6 cut(s) 279, 321, 483, 788, 904, 958
DrdI GACNNNNNNGTC 2 cut(s) 224, 314
DseDI GACNNNNNNGTC 2 cut(s) 224, 314
Eco130I CCWWGG 3 cut(s) 167, 472, 1005
Eco47I GGWCC 2 cut(s) 469, 764
Eco57I CTGAAG 2 cut(s) 966, 1069
EcoNI CCTNNNNNAGG 1 cut(s) 581
EcoO109I RGGNCCY 1 cut(s) 764
EcoRII CCWGG 3 cut(s) 144, 390, 874
EcoT14I CCWWGG 3 cut(s) 167, 472, 1005
EcoT22I ATGCAT 1 cut(s) 671
EgeI GGCGCC 1 cut(s) 82
EheI GGCGCC 1 cut(s) 82
ErhI CCWWGG 3 cut(s) 167, 472, 1005
FaeI CATG 3 cut(s) 171, 256, 1196
FaqI GGGAC 2 cut(s) 86, 624
FatI CATG 3 cut(s) 167, 252, 1192
FauI CCCGC 2 cut(s) 487, 1084
FauNDI CATATG 1 cut(s) 665
FbaI TGATCA 1 cut(s) 279
FblI GTMKAC 2 cut(s) 228, 384
Fnu4HI GCNGC 8 cut(s) 12, 84, 87, 356, 435, 492, 1021, 1245
FokI GGATG 2 cut(s) 374, 917
Fsp4HI GCNGC 8 cut(s) 12, 84, 87, 356, 435, 492, 1021, 1245
GlaI GCGC 3 cut(s) 82, 444, 490
GluI GCNGC 8 cut(s) 12, 84, 87, 356, 435, 492, 1021, 1245
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 7 cut(s) 150, 264, 333, 396, 524, 1074, 1128
HapII CCGG 7 cut(s) 319, 330, 368, 397, 414, 701, 1248
HgaI GACGC 3 cut(s) 214, 227, 317
HhaI GCGC 3 cut(s) 83, 445, 491
Hin1I GRCGYC 3 cut(s) 81, 219, 309
Hin1II CATG 3 cut(s) 171, 256, 1196
Hin6I GCGC 3 cut(s) 81, 443, 489
HinP1I GCGC 3 cut(s) 81, 443, 489
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 7 cut(s) 38, 43, 573, 697, 730, 793, 1096
HpaII CCGG 7 cut(s) 319, 330, 368, 397, 414, 701, 1248
HphI GGTGA 4 cut(s) 133, 193, 509, 617
Hpy166II GTNNAC 4 cut(s) 229, 385, 898, 1253
Hpy188III TCNNGA 2 cut(s) 319, 549
Hpy8I GTNNAC 4 cut(s) 229, 385, 898, 1253
Hpy99I CGWCG 7 cut(s) 80, 221, 230, 248, 263, 272, 311
HpyAV CCTTC 2 cut(s) 284, 577
HpyCH4III ACNGT 3 cut(s) 233, 430, 1027
HpyCH4IV ACGT 2 cut(s) 315, 423
HpyCH4V TGCA 8 cut(s) 520, 626, 669, 719, 898, 1013, 1069, 1205
HpyF10VI GCNNNNNNNGC 8 cut(s) 335, 364, 440, 530, 539, 1071, 1125, 1202
HpyF3I CTNAG 2 cut(s) 507, 614
HpySE526I ACGT 2 cut(s) 315, 423
Hsp92I GRCGYC 3 cut(s) 81, 219, 309
Hsp92II CATG 3 cut(s) 171, 256, 1196
HspAI GCGC 3 cut(s) 81, 443, 489
KasI GGCGCC 1 cut(s) 80
Kpn2I TCCGGA 1 cut(s) 318
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Ksp22I TGATCA 1 cut(s) 279
KspI CCGCGG 1 cut(s) 438
Kzo9I GATC 6 cut(s) 279, 321, 483, 788, 904, 958
LmnI GCTCC 1 cut(s) 1174
Lsp1109I GCAGC 2 cut(s) 342, 1231
LweI GCATC 1 cut(s) 451
MaeII ACGT 2 cut(s) 315, 423
MaeIII GTNAC 5 cut(s) 424, 501, 856, 944, 1102
MalI GATC 6 cut(s) 281, 323, 485, 790, 906, 960
MboI GATC 6 cut(s) 279, 321, 483, 788, 904, 958
MboII GAAGA 6 cut(s) 38, 280, 739, 899, 902, 1075
MhlI GDGCHC 1 cut(s) 900
MluCI AATT 3 cut(s) 755, 1000, 1184
Mly113I GGCGCC 1 cut(s) 81
MlyI GAGTC 2 cut(s) 52, 787
MmeI TCCRAC 1 cut(s) 330
Mph1103I ATGCAT 1 cut(s) 671
MroI TCCGGA 1 cut(s) 318
MroNI GCCGGC 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 7 cut(s) 319, 330, 368, 397, 414, 701, 1248
MspR9I CCNGG 5 cut(s) 146, 392, 398, 415, 876
Mva1269I GAATGC 2 cut(s) 837, 1079
MvaI CCWGG 3 cut(s) 146, 392, 876
MvnI CGCG 4 cut(s) 248, 437, 491, 926
MwoI GCNNNNNNNGC 8 cut(s) 335, 364, 440, 530, 539, 1071, 1125, 1202
NaeI GCCGGC 1 cut(s) 331
NarI GGCGCC 1 cut(s) 81
NciI CCSGG 2 cut(s) 398, 415
NcoI CCATGG 1 cut(s) 167
NdeI CATATG 1 cut(s) 665
NdeII GATC 6 cut(s) 279, 321, 483, 788, 904, 958
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 3 cut(s) 171, 256, 1196
NlaIV GGNNCC 4 cut(s) 82, 690, 1075, 1170
NmeAIII GCCGAG 2 cut(s) 132, 1222
NmuCI GTSAC 3 cut(s) 424, 856, 1102
NsiI ATGCAT 1 cut(s) 671
NspI RCATGY 2 cut(s) 256, 1196
PasI CCCWGGG 1 cut(s) 145
PcsI WCGNNNNNNNCGW 3 cut(s) 225, 264, 267
PctI GAATGC 2 cut(s) 837, 1079
PdiI GCCGGC 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 5 cut(s) 38, 573, 697, 730, 1096
PflFI GACNNNGTC 2 cut(s) 380, 775
PkrI GCNGC 8 cut(s) 13, 85, 88, 357, 436, 493, 1022, 1246
PleI GAGTC 2 cut(s) 51, 787
PluTI GGCGCC 1 cut(s) 84
PpsI GAGTC 2 cut(s) 51, 787
PpuMI RGGWCCY 1 cut(s) 764
Psp5II RGGWCCY 1 cut(s) 764
Psp6I CCWGG 3 cut(s) 144, 390, 874
PspGI CCWGG 3 cut(s) 144, 390, 874
PspN4I GGNNCC 4 cut(s) 82, 690, 1075, 1170
PspPI GGNCC 6 cut(s) 148, 394, 469, 764, 1073, 1126
PspPPI RGGWCCY 1 cut(s) 764
PstI CTGCAG 1 cut(s) 1207
PsyI GACNNNGTC 2 cut(s) 380, 775
RsaI GTAC 4 cut(s) 251, 410, 713, 923
RsaNI GTAC 4 cut(s) 250, 409, 712, 922
SacII CCGCGG 1 cut(s) 438
SalI GTCGAC 1 cut(s) 227
SatI GCNGC 8 cut(s) 12, 84, 87, 356, 435, 492, 1021, 1245
Sau3AI GATC 6 cut(s) 279, 321, 483, 788, 904, 958
Sau96I GGNCC 6 cut(s) 148, 394, 469, 764, 1073, 1126
ScaI AGTACT 1 cut(s) 713
SchI GAGTC 2 cut(s) 52, 787
ScrFI CCNGG 5 cut(s) 146, 392, 398, 415, 876
SduI GDGCHC 1 cut(s) 900
SetI ASST 9 cut(s) 128, 162, 206, 210, 318, 426, 508, 766, 1011
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 1 cut(s) 1203
SfoI GGCGCC 1 cut(s) 82
Sfr303I CCGCGG 1 cut(s) 438
SgrBI CCGCGG 1 cut(s) 438
SinI GGWCC 2 cut(s) 469, 764
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
Sse9I AATT 3 cut(s) 755, 1000, 1184
SspDI GGCGCC 1 cut(s) 80
SspI AATATT 1 cut(s) 870
StyD4I CCNGG 5 cut(s) 144, 390, 396, 413, 874
StyI CCWWGG 3 cut(s) 167, 472, 1005
TaaI ACNGT 3 cut(s) 233, 430, 1027
TaiI ACGT 2 cut(s) 318, 426
TaqI TCGA 3 cut(s) 41, 228, 791
TasI AATT 3 cut(s) 755, 1000, 1184
TatI WGTACW 1 cut(s) 711
TauI GCSGC 6 cut(s) 14, 86, 89, 437, 494, 1023
TfiI GAWTC 5 cut(s) 38, 573, 697, 730, 1096
TscAI CASTG 2 cut(s) 544, 1107
TseFI GTSAC 3 cut(s) 424, 856, 1102
TseI GCWGC 2 cut(s) 355, 1244
Tsp45I GTSAC 3 cut(s) 424, 856, 1102
TspDTI ATGAA 3 cut(s) 107, 169, 722
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 2 cut(s) 544, 1107
Tth111I GACNNNGTC 2 cut(s) 380, 775
VneI GTGCAC 1 cut(s) 896
VpaK11BI GGWCC 2 cut(s) 469, 764
XagI CCTNNNNNAGG 1 cut(s) 581
XapI RAATTY 1 cut(s) 1000
XceI RCATGY 2 cut(s) 256, 1196
XmiI GTMKAC 2 cut(s) 228, 384
XmnI GAANNNNTTC 1 cut(s) 176
ZrmI AGTACT 1 cut(s) 713
Zsp2I ATGCAT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.