Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010562

Physical Location & Seq

Genomic Coordinates Reverse (-)

33416988 .. 33418906

Gene Structure 1919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36510.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTTAGTAGACTCAAACCCACCTCTCCTACACAACTATGGAGCCCTTTTGCACAAGCCATCCAATAAAACTCCTCAACTACATGAAAACCATGTCACAGAAGAATGCCAACTCCCATTGATAGACCTTGATGGATTAAACAGCCTTGACATGATCCACAGGCTAGAATGCGCTAGAGCGATTTGTAGCGCCTCCTCGGAATGGGGCTTTTTCCAAGTGGTGAACCATGGCATTAGCCCTCAGCTTATAGAGAAGATGAGGAGAGAGCAAGTCAAGTTGTTTTCAGCACCCTTTGATAAGAAACAAAATGCTGGCCTTCTCAACAATTCATACAGGTTTGGGACTCCAACTGCAACTCACGCATCTCAGTACTCTTGGTCTGAAGCTTTTCACATTCCTGTCTCAAAGATCTCAGACAAATCTTGCTATGGGGATGAGTTCACCTCTCTAAGGGAAGTGATGGAGGAGTTTTCAGCAGCCATGTCAAATCTATCAAAAGTGCTTGCTGAGGTTCTAATCAATGATCTCAGCAACCAAGAGGAAGCTCTAGAAGACATTTGTGAGTCAAGCTCGTGCTTTCTTCGCTTGAATCGCTACCCGGCTTGTCCATTTTCACCAGAGATGATTGGTCTAGTGCCTCACACTGACAGTGATTTCCTCACCATTCTTTGCCAAGATCAAGTAGGAGGACTTCAACTCATGAAAGACTCCAAATGGGTTGCTGTAAAACCAAATCCAGACGCACTTATCGTCAACATTGGAGATCTTTTTCAGGCATGGAGCAACGATGTGTATAAGAGTGTGGAACACAAGGTCCTGGCCAACGAGAAGACGGAACGATATTCCATTGCATACTTCCTGTGCCCATCTTATGATTCTTTAATAGGAAGCAGCAGCACAGAATCCTCCATTTACAGAAAGTTCACATTTGGAGAATACAGAAGCCAAATCCAGGAGGATGTCAAGAAGCTTGGCCATAAAGTTGGTCTCTCCAGATTTCTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy B3 DIOX_N

Protein Analysis

336

Amino Acids

37.77

Weight (kDa)

5.48

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	38 - 140	9.2e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	192 - 259	7.7e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36510 FvH4_4g36510 FvH4_4g36510
malus_domestica	MD13G1008700.v1.1 MD16G1006700.v1.1
prunus_persica	Prupe.1G344000_v2.0.a1 Prupe.1G344000_v2.0.a1
pyrus_communis	pycom13g00730 pycom16g00640
rosa_chinensis	RchiOBHm_Chr4g0446271
rosa_laevigata	RLG00000005675
rosa_multiflora	Rmu_co8482297.1_g000001 Rmu_sc0002266.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386670
rosa_rugosa	Rorug04G0369400 Rorug04G0369500
rosa_samantha	Rh4AG431200 Rh4BG440600 Rh4CG457900 Rh4DG439100
rosa_wichuraiana	Rw4G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	148
AcoI	YGGCCR	2 cut(s)	819, 973
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	3 cut(s)	201, 450, 952
AgsI	TTSAA	2 cut(s)	589, 695
AjnI	CCWGG	2 cut(s)	816, 951
AloI	GAACNNNNNNTCC	2 cut(s)	798, 830
AluBI	AGCT	5 cut(s)	244, 386, 545, 570, 970
AluI	AGCT	5 cut(s)	244, 386, 545, 570, 970
Alw26I	GTCTC	2 cut(s)	406, 992
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	3 cut(s)	313, 819, 973
ApeKI	GCWGC	3 cut(s)	476, 891, 894
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	2 cut(s)	173, 191
AspS9I	GGNCC	1 cut(s)	814
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	4 cut(s)	232, 433, 606, 652
AvaII	GGWCC	1 cut(s)	814
BaeGI	GKGCMC	1 cut(s)	866
BalI	TGGCCA	2 cut(s)	821, 975
BanII	GRGCYC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	675, 707
BauI	CACGAG	1 cut(s)	571
BbsI	GAAGAC	2 cut(s)	558, 836
BbvCI	CCTCAGC	2 cut(s)	240, 507
BbvI	GCAGC	3 cut(s)	488, 903, 906
BccI	CCATC	4 cut(s)	67, 125, 454, 874
BciT130I	CCWGG	2 cut(s)	818, 953
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	2 cut(s)	406, 992
BfaI	CTAG	4 cut(s)	164, 174, 548, 632
BfoI	RGCGCY	1 cut(s)	192
BglII	AGATCT	2 cut(s)	408, 763
BisI	GCNGC	3 cut(s)	477, 892, 895
BlsI	GCNGC	3 cut(s)	478, 893, 896
BmcAI	AGTACT	1 cut(s)	371
Bme1390I	CCNGG	3 cut(s)	599, 818, 953
Bme18I	GGWCC	1 cut(s)	814
BmgT120I	GGNCC	1 cut(s)	814
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	3 cut(s)	599, 818, 953
BmsI	GCATC	1 cut(s)	371
BpiI	GAAGAC	2 cut(s)	558, 836
BplI	GAGNNNNNCTC	4 cut(s)	428, 460, 554, 586
BpmI	CTGGAG	1 cut(s)	976
Bpu10I	CCTNAGC	2 cut(s)	240, 507
BpuMI	CCSGG	1 cut(s)	599
BsaI	GGTCTC	1 cut(s)	992
BsaJI	CCNNGG	2 cut(s)	195, 226
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 450, 952
Bse3DI	GCAATG	1 cut(s)	846
BseBI	CCWGG	2 cut(s)	818, 953
BseDI	CCNNGG	2 cut(s)	195, 226
BseGI	GGATG	3 cut(s)	59, 439, 964
BseLI	CCNNNNNNNGG	3 cut(s)	201, 450, 952
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	5 cut(s)	254, 380, 426, 498, 541
BseRI	GAGGAG	4 cut(s)	63, 184, 274, 479
BseSI	GKGCMC	1 cut(s)	866
BseXI	GCAGC	3 cut(s)	488, 903, 906
BshFI	GGCC	3 cut(s)	315, 821, 975
BsiSI	CCGG	1 cut(s)	599
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	3 cut(s)	201, 450, 952
BsmAI	GTCTC	2 cut(s)	406, 992
BsmFI	GGGAC	1 cut(s)	355
BsmI	GAATGC	2 cut(s)	110, 173
BsnI	GGCC	3 cut(s)	315, 821, 975
Bso31I	GGTCTC	1 cut(s)	992
Bsp1286I	GDGCHC	2 cut(s)	46, 866
Bsp143I	GATC	5 cut(s)	153, 408, 523, 676, 763
Bsp19I	CCATGG	1 cut(s)	226
BspANI	GGCC	3 cut(s)	315, 821, 975
BspCNI	CTCAG	5 cut(s)	253, 379, 425, 499, 540
BspHI	TCATGA	1 cut(s)	699
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	992
BsrDI	GCAATG	1 cut(s)	846
BssECI	CCNNGG	2 cut(s)	195, 226
BssMI	GATC	5 cut(s)	153, 408, 523, 676, 763
BssSI	CACGAG	1 cut(s)	571
BssT1I	CCWWGG	1 cut(s)	226
Bst2BI	CACGAG	1 cut(s)	571
Bst2UI	CCWGG	2 cut(s)	818, 953
Bst4CI	ACNGT	1 cut(s)	650
BstC8I	GCNNGC	2 cut(s)	313, 504
BstDEI	CTNAG	6 cut(s)	240, 366, 412, 449, 507, 527
BstDSI	CCRYGG	1 cut(s)	226
BstENI	CCTNNNNNAGG	1 cut(s)	448
BstF5I	GGATG	3 cut(s)	59, 439, 964
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	173, 191
BstKTI	GATC	5 cut(s)	156, 411, 526, 679, 766
BstMAI	GTCTC	2 cut(s)	406, 992
BstMBI	GATC	5 cut(s)	153, 408, 523, 676, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 582, 591
BstNI	CCWGG	2 cut(s)	818, 953
BstSCI	CCNGG	3 cut(s)	597, 816, 951
BstSLI	GKGCMC	1 cut(s)	866
BstV1I	GCAGC	3 cut(s)	488, 903, 906
BstV2I	GAAGAC	2 cut(s)	558, 836
BstX2I	RGATCY	2 cut(s)	408, 763
BstXI	CCANNNNNNTGG	1 cut(s)	983
BstYI	RGATCY	2 cut(s)	408, 763
BsuRI	GGCC	3 cut(s)	315, 821, 975
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	3 cut(s)	59, 439, 964
BtsIMutI	CAGTG	2 cut(s)	642, 655
Cac8I	GCNNGC	2 cut(s)	313, 504
CciI	TCATGA	1 cut(s)	699
CfoI	GCGC	2 cut(s)	173, 191
Cfr13I	GGNCC	1 cut(s)	814
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	7 cut(s)	83, 92, 151, 227, 481, 700, 777
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	6 cut(s)	240, 366, 412, 449, 507, 527
DpnI	GATC	5 cut(s)	155, 410, 525, 678, 765
DpnII	GATC	5 cut(s)	153, 408, 523, 676, 763
EaeI	YGGCCR	2 cut(s)	819, 973
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	992
Eco47I	GGWCC	1 cut(s)	814
Eco57I	CTGAAG	1 cut(s)	402
EcoNI	CCTNNNNNAGG	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	814
EcoRII	CCWGG	2 cut(s)	816, 951
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	7 cut(s)	86, 95, 154, 230, 484, 703, 780
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	7 cut(s)	82, 91, 150, 226, 480, 699, 776
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	477, 892, 895
FokI	GGATG	3 cut(s)	46, 446, 971
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	477, 892, 895
FspBI	CTAG	4 cut(s)	164, 174, 548, 632
GlaI	GCGC	2 cut(s)	172, 190
GluI	GCNGC	3 cut(s)	477, 892, 895
GsuI	CTGGAG	1 cut(s)	976
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	3 cut(s)	315, 821, 975
HapII	CCGG	1 cut(s)	599
HgaI	GACGC	1 cut(s)	749
HhaI	GCGC	2 cut(s)	173, 191
Hin1II	CATG	7 cut(s)	86, 95, 154, 230, 484, 703, 780
Hin6I	GCGC	2 cut(s)	171, 189
HinP1I	GCGC	2 cut(s)	171, 189
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	2 cut(s)	384, 968
HinfI	GANTC	7 cut(s)	11, 343, 563, 589, 707, 875, 902
HpaII	CCGG	1 cut(s)	599
HphI	GGTGA	4 cut(s)	232, 433, 606, 652
Hpy166II	GTNNAC	5 cut(s)	10, 223, 441, 754, 924
Hpy188I	TCNGA	3 cut(s)	199, 382, 415
Hpy188III	TCNNGA	5 cut(s)	548, 700, 737, 964, 993
Hpy8I	GTNNAC	5 cut(s)	10, 223, 441, 754, 924
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	650
HpyCH4V	TGCA	3 cut(s)	52, 353, 851
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 582, 591
HpyF3I	CTNAG	6 cut(s)	240, 366, 412, 449, 507, 527
Hsp92II	CATG	7 cut(s)	86, 95, 154, 230, 484, 703, 780
HspAI	GCGC	2 cut(s)	171, 189
Kzo9I	GATC	5 cut(s)	153, 408, 523, 676, 763
LmnI	GCTCC	2 cut(s)	41, 780
Lsp1109I	GCAGC	3 cut(s)	488, 903, 906
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	4 cut(s)	164, 174, 548, 632
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	5 cut(s)	155, 410, 525, 678, 765
MboI	GATC	5 cut(s)	153, 408, 523, 676, 763
MboII	GAAGA	5 cut(s)	113, 265, 563, 572, 841
MflI	RGATCY	2 cut(s)	408, 763
MhlI	GDGCHC	2 cut(s)	46, 866
MlsI	TGGCCA	2 cut(s)	821, 975
MluCI	AATT	1 cut(s)	325
MluNI	TGGCCA	2 cut(s)	821, 975
MlyI	GAGTC	4 cut(s)	5, 337, 572, 701
MmeI	TCCRAC	1 cut(s)	371
Mox20I	TGGCCA	2 cut(s)	821, 975
MroXI	GAANNNNTTC	1 cut(s)	387
MscI	TGGCCA	2 cut(s)	821, 975
MseI	TTAA	2 cut(s)	137, 881
MslI	CAYNNNNRTG	1 cut(s)	36
Msp20I	TGGCCA	2 cut(s)	821, 975
MspI	CCGG	1 cut(s)	599
MspR9I	CCNGG	3 cut(s)	599, 818, 953
Mva1269I	GAATGC	2 cut(s)	110, 173
MvaI	CCWGG	2 cut(s)	818, 953
MwoI	GCNNNNNNNGC	3 cut(s)	359, 582, 591
NciI	CCSGG	1 cut(s)	599
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	5 cut(s)	153, 408, 523, 676, 763
NlaIII	CATG	7 cut(s)	86, 95, 154, 230, 484, 703, 780
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	94
PagI	TCATGA	1 cut(s)	699
PcsI	WCGNNNNNNNCGW	1 cut(s)	747
PctI	GAATGC	2 cut(s)	110, 173
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	3 cut(s)	589, 875, 902
PfoI	TCCNGGA	1 cut(s)	951
PkrI	GCNGC	3 cut(s)	478, 893, 896
PleI	GAGTC	4 cut(s)	5, 337, 571, 701
PpsI	GAGTC	4 cut(s)	5, 337, 571, 701
PpuMI	RGGWCCY	1 cut(s)	814
Psp5II	RGGWCCY	1 cut(s)	814
Psp6I	CCWGG	2 cut(s)	816, 951
PspGI	CCWGG	2 cut(s)	816, 951
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	814
PspPPI	RGGWCCY	1 cut(s)	814
PsuI	RGATCY	2 cut(s)	408, 763
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	137, 881
SatI	GCNGC	3 cut(s)	477, 892, 895
Sau3AI	GATC	5 cut(s)	153, 408, 523, 676, 763
Sau96I	GGNCC	1 cut(s)	814
ScaI	AGTACT	1 cut(s)	371
SchI	GAGTC	4 cut(s)	5, 337, 572, 701
ScrFI	CCNGG	3 cut(s)	599, 818, 953
SduI	GDGCHC	2 cut(s)	46, 866
SfaNI	GCATC	1 cut(s)	371
SinI	GGWCC	1 cut(s)	814
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	1 cut(s)	325
SspMI	CTAG	4 cut(s)	164, 174, 548, 632
StyD4I	CCNGG	3 cut(s)	597, 816, 951
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	650
TasI	AATT	1 cut(s)	325
TatI	WGTACW	1 cut(s)	369
TfiI	GAWTC	3 cut(s)	589, 875, 902
Tru1I	TTAA	2 cut(s)	137, 881
Tru9I	TTAA	2 cut(s)	137, 881
TscAI	CASTG	2 cut(s)	649, 655
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	3 cut(s)	476, 891, 894
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	3 cut(s)	99, 318, 716
TspGWI	ACGGA	1 cut(s)	848
TspRI	CASTG	2 cut(s)	649, 655
VpaK11BI	GGWCC	1 cut(s)	814
XagI	CCTNNNNNAGG	1 cut(s)	448
XbaI	TCTAGA	1 cut(s)	547
XmiI	GTMKAC	1 cut(s)	9
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	4 cut(s)	164, 174, 548, 632
ZrmI	AGTACT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.