Rorug04G0369500

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010562
Physical Location & Seq
Forward (+)
54062263 .. 54064293
2031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0369500.1

Sequence Viewer

Length: 966 bp
ATGGAACACTTCAGCAAGGACTTCAGCATAGGCGCATGCGAAGGCCAGAAGATTGTGGATGGAGAGACCTTGCCACTGGTGCTGCAACCTCCAGAGCCAACCAGGAATGATGTGGAGTCGCTTGTGTCGACTCTCAAGAAGAACAAGGACTGGTTTGAGCAGATACTTATCAAGAACAGCGCAATCCTGCTTAGAGGTTTCAATGTACAGAATGCAGTGGAGTTCAATGACATTGTGGAAGCTTTAGGGTGGGATGATATTCGTTACGTTGGGCCTGCTCCTCGAACGCATGTGCACAAGCGTGTCTGGACTGCCAATGAAGGACCTCTATCTGAGTTCATATACTATCACCATGAGATGGTGCTGATTAAGGAGTACCCCAAGCAAGTCATCCTATTCTGTGAGACACCACCACCAGAAGGAGGACAAACACCTTTTGTTCCAAGCTTCCGAGTGACCGAAAGGATGCTCGAGGAGTTCCCAGAAGCTGTAGAAGAAATGGAGGCAAATGGCTTGAAGTACACCTTCACAGCTCCTAGCAAGAACAGCACTGGTTCAATGAGAGGTAGGGGCTGGGAGGATGCTTTTGCAACATCAGATCGAGCCGAAGCTGAGAAGAGGTCTAATGCTTTAGGCATGGATGTCGAGTGGCTAGCAGATGGCTCCATGAAGACGATATTGGGTCCAAGATCAGTGACAAAGGTGTTTGAAGGAAGAAAAGGAAGGAGAATGTGGTTCAACACGGTTGTGGGGATGCATGGGAAGGAGCATAGTTCTGCTTTCATGGCCGACGGAACGGAGATTCCGGACAATGTGGTGAATAGATGTCAAGAGATTATTGAAGAAGAAAGTATCCAATTCAAGTGGGAGAAGGGTGATGTGCTCTTCCTTGATAACTTGGCTTTGCTCCATGGAAGGAGGCCTTCTGCTGCTCCCAGAAGAGTCTTGGTAGCTACTTGCAAGTAG

Protein Analysis

321

Amino Acids

36.34

Weight (kDa)

5.52

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 37 - 317 3.3e-31 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 358
AccI GTMKAC 1 cut(s) 128
AccIII TCCGGA 1 cut(s) 805
AcoI YGGCCR 1 cut(s) 786
AcuI CTGAAG 1 cut(s) 7
AfaI GTAC 3 cut(s) 207, 377, 521
AfiI CCNNNNNNNGG 3 cut(s) 358, 419, 422
AgsI TTSAA 8 cut(s) 202, 226, 517, 558, 710, 739, 842, 862
AjnI CCWGG 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 662, 694
AleI CACNNNNGTG 2 cut(s) 300, 746
AloI GAACNNNNNNTCC 2 cut(s) 787, 819
AluBI AGCT 6 cut(s) 242, 447, 488, 533, 611, 953
AluI AGCT 6 cut(s) 242, 447, 488, 533, 611, 953
Alw21I GWGCWC 2 cut(s) 297, 885
Alw26I GTCTC 2 cut(s) 59, 398
Alw44I GTGCAC 1 cut(s) 293
AlwNI CAGNNNCTG 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 470
Aor13HI TCCGGA 1 cut(s) 805
AoxI GGCC 4 cut(s) 43, 272, 786, 920
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 2 cut(s) 82, 929
AspLEI GCGC 2 cut(s) 35, 182
AspS9I GGNCC 3 cut(s) 272, 323, 683
AsuHPI GGTGA 3 cut(s) 341, 829, 887
AsuNHI GCTAGC 1 cut(s) 652
AvaI CYCGRG 1 cut(s) 470
AvaII GGWCC 2 cut(s) 323, 683
BaeGI GKGCMC 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 677
Bbv12I GWGCWC 2 cut(s) 297, 885
BbvI GCAGC 2 cut(s) 69, 916
BccI CCATC 3 cut(s) 53, 352, 653
BcgI CGANNNNNNTGC 2 cut(s) 625, 659
BciT130I CCWGG 1 cut(s) 103
BciVI GTATCC 1 cut(s) 863
BcoDI GTCTC 2 cut(s) 59, 398
BfaI CTAG 2 cut(s) 537, 653
BfmI CTRYAG 1 cut(s) 489
BfuI GTATCC 1 cut(s) 863
BisI GCNGC 2 cut(s) 83, 930
BlsI GCNGC 2 cut(s) 84, 931
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 2 cut(s) 323, 683
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 3 cut(s) 272, 323, 683
BmiI GGNNCC 2 cut(s) 664, 684
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 3 cut(s) 456, 571, 744
BmtI GCTAGC 1 cut(s) 656
BpiI GAAGAC 1 cut(s) 677
BpmI CTGGAG 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 119
BsaBI GATNNNNATC 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 910
BsaWI WCCGGW 1 cut(s) 805
Bsc4I CCNNNNNNNGG 3 cut(s) 358, 419, 422
Bse1I ACTGG 3 cut(s) 81, 155, 556
Bse8I GATNNNNATC 1 cut(s) 167
BseAI TCCGGA 1 cut(s) 805
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 910
BseGI GGATG 7 cut(s) 64, 259, 390, 471, 586, 646, 759
BseJI GATNNNNATC 1 cut(s) 167
BseLI CCNNNNNNNGG 3 cut(s) 358, 419, 422
BseMII CTCAG 2 cut(s) 324, 603
BseNI ACTGG 3 cut(s) 81, 155, 556
BseRI GAGGAG 2 cut(s) 270, 488
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 2 cut(s) 69, 916
BseYI CCCAGC 1 cut(s) 573
BshFI GGCC 4 cut(s) 45, 274, 788, 922
BsiHKAI GWGCWC 2 cut(s) 297, 885
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 1 cut(s) 806
BslI CCNNNNNNNGG 3 cut(s) 358, 419, 422
BsmAI GTCTC 2 cut(s) 59, 398
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 4 cut(s) 45, 274, 788, 922
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 470
Bsp1286I GDGCHC 2 cut(s) 297, 885
Bsp13I TCCGGA 1 cut(s) 805
Bsp1407I TGTACA 1 cut(s) 205
Bsp143I GATC 2 cut(s) 598, 689
Bsp19I CCATGG 1 cut(s) 910
BspANI GGCC 4 cut(s) 45, 274, 788, 922
BspCNI CTCAG 2 cut(s) 325, 604
BspEI TCCGGA 1 cut(s) 805
BspLI GGNNCC 2 cut(s) 664, 684
BspOI GCTAGC 1 cut(s) 656
BspQI GCTCTTC 1 cut(s) 890
BspTNI GGTCTC 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 205
BsrI ACTGG 3 cut(s) 81, 155, 556
BssECI CCNNGG 1 cut(s) 910
BssMI GATC 2 cut(s) 598, 689
BssT1I CCWWGG 1 cut(s) 910
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 745
Bst6I CTCTTC 3 cut(s) 611, 890, 934
BstAUI TGTACA 1 cut(s) 205
BstC8I GCNNGC 3 cut(s) 37, 276, 654
BstDEI CTNAG 3 cut(s) 191, 333, 612
BstDSI CCRYGG 1 cut(s) 910
BstF5I GGATG 7 cut(s) 64, 259, 390, 471, 586, 646, 759
BstHHI GCGC 2 cut(s) 35, 182
BstKTI GATC 2 cut(s) 601, 692
BstMAI GTCTC 2 cut(s) 59, 398
BstMBI GATC 2 cut(s) 598, 689
BstMWI GCNNNNNNNGC 3 cut(s) 79, 546, 785
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 2 cut(s) 39, 293
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 489
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 69, 916
BstV2I GAAGAC 1 cut(s) 677
BsuI GTATCC 1 cut(s) 863
BsuRI GGCC 4 cut(s) 45, 274, 788, 922
BtgI CCRYGG 1 cut(s) 910
BtsCI GGATG 7 cut(s) 64, 259, 390, 471, 586, 646, 759
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 4 cut(s) 74, 222, 549, 699
Cac8I GCNNGC 3 cut(s) 37, 276, 654
CaiI CAGNNNCTG 1 cut(s) 488
CfoI GCGC 2 cut(s) 35, 182
Cfr13I GGNCC 3 cut(s) 272, 323, 683
Csp6I GTAC 3 cut(s) 206, 376, 520
CspCI CAANNNNNGTGG 2 cut(s) 845, 880
CviAII CATG 8 cut(s) 36, 290, 353, 637, 667, 758, 784, 911
CviQI GTAC 3 cut(s) 206, 376, 520
DdeI CTNAG 3 cut(s) 191, 333, 612
DpnI GATC 2 cut(s) 600, 691
DpnII GATC 2 cut(s) 598, 689
EaeI YGGCCR 1 cut(s) 786
Eam1104I CTCTTC 3 cut(s) 611, 890, 934
EarI CTCTTC 3 cut(s) 611, 890, 934
Eco130I CCWWGG 1 cut(s) 910
Eco147I AGGCCT 1 cut(s) 922
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 2 cut(s) 323, 683
Eco57I CTGAAG 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 910
EcoT22I ATGCAT 1 cut(s) 759
ErhI CCWWGG 1 cut(s) 910
FaeI CATG 8 cut(s) 39, 293, 356, 640, 670, 761, 787, 914
FalI AAGNNNNNCTT 4 cut(s) 509, 541, 907, 939
FatI CATG 8 cut(s) 35, 289, 352, 636, 666, 757, 783, 910
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 2 cut(s) 83, 930
FokI GGATG 7 cut(s) 71, 266, 377, 478, 593, 653, 766
Fsp4HI GCNGC 2 cut(s) 83, 930
FspBI CTAG 2 cut(s) 537, 653
GlaI GCGC 2 cut(s) 34, 181
GluI GCNGC 2 cut(s) 83, 930
GsaI CCCAGC 1 cut(s) 577
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 4 cut(s) 45, 274, 788, 922
HapII CCGG 1 cut(s) 806
HhaI GCGC 2 cut(s) 35, 182
Hin1II CATG 8 cut(s) 39, 293, 356, 640, 670, 761, 787, 914
Hin6I GCGC 2 cut(s) 33, 180
HinP1I GCGC 2 cut(s) 33, 180
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 2 cut(s) 240, 445
HinfI GANTC 4 cut(s) 116, 130, 802, 942
HpaII CCGG 1 cut(s) 806
HphI GGTGA 3 cut(s) 341, 829, 887
Hpy166II GTNNAC 3 cut(s) 129, 295, 522
Hpy188I TCNGA 3 cut(s) 334, 452, 598
Hpy188III TCNNGA 6 cut(s) 92, 136, 172, 307, 806, 830
Hpy8I GTNNAC 3 cut(s) 129, 295, 522
Hpy99I CGWCG 1 cut(s) 794
HpyCH4III ACNGT 1 cut(s) 745
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 6 cut(s) 85, 215, 295, 590, 757, 960
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 546, 785
HpyF3I CTNAG 3 cut(s) 191, 333, 612
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 8 cut(s) 39, 293, 356, 640, 670, 761, 787, 914
HspAI GCGC 2 cut(s) 33, 180
Kpn2I TCCGGA 1 cut(s) 805
Kzo9I GATC 2 cut(s) 598, 689
LguI GCTCTTC 1 cut(s) 890
LmnI GCTCC 6 cut(s) 283, 538, 668, 766, 912, 937
Lsp1109I GCAGC 2 cut(s) 69, 916
LweI GCATC 3 cut(s) 456, 571, 744
MaeI CTAG 2 cut(s) 537, 653
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 3 cut(s) 263, 454, 694
MalI GATC 2 cut(s) 600, 691
MboI GATC 2 cut(s) 598, 689
MhlI GDGCHC 2 cut(s) 297, 885
MluCI AATT 1 cut(s) 857
MlyI GAGTC 3 cut(s) 124, 125, 951
Mph1103I ATGCAT 1 cut(s) 759
MroI TCCGGA 1 cut(s) 805
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 2 cut(s) 300, 746
MspI CCGG 1 cut(s) 806
MspR9I CCNGG 1 cut(s) 103
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 3 cut(s) 79, 546, 785
NcoI CCATGG 1 cut(s) 910
NdeII GATC 2 cut(s) 598, 689
NheI GCTAGC 1 cut(s) 652
NlaIII CATG 8 cut(s) 39, 293, 356, 640, 670, 761, 787, 914
NlaIV GGNNCC 2 cut(s) 664, 684
NmuCI GTSAC 2 cut(s) 454, 694
NsiI ATGCAT 1 cut(s) 759
NspI RCATGY 2 cut(s) 39, 293
OliI CACNNNNGTG 2 cut(s) 300, 746
PaeI GCATGC 1 cut(s) 39
PaeR7I CTCGAG 1 cut(s) 470
PceI AGGCCT 1 cut(s) 922
PciSI GCTCTTC 1 cut(s) 890
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 802
PflMI CCANNNNNTGG 1 cut(s) 358
PkrI GCNGC 2 cut(s) 84, 931
PleI GAGTC 3 cut(s) 124, 124, 950
PpsI GAGTC 3 cut(s) 124, 124, 950
PpuMI RGGWCCY 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 573
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 664, 684
PspPI GGNCC 3 cut(s) 272, 323, 683
PspPPI RGGWCCY 1 cut(s) 323
PspXI VCTCGAGB 1 cut(s) 470
PstNI CAGNNNCTG 1 cut(s) 488
RsaI GTAC 3 cut(s) 207, 377, 521
RsaNI GTAC 3 cut(s) 206, 376, 520
RseI CAYNNNNRTG 2 cut(s) 300, 746
SalI GTCGAC 1 cut(s) 127
SapI GCTCTTC 1 cut(s) 890
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 2 cut(s) 83, 930
Sau3AI GATC 2 cut(s) 598, 689
Sau96I GGNCC 3 cut(s) 272, 323, 683
SchI GAGTC 3 cut(s) 124, 125, 951
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 2 cut(s) 297, 885
SfaNI GCATC 3 cut(s) 456, 571, 744
SfcI CTRYAG 1 cut(s) 489
Sfr274I CTCGAG 1 cut(s) 470
SinI GGWCC 2 cut(s) 323, 683
SlaI CTCGAG 1 cut(s) 470
SmiMI CAYNNNNRTG 2 cut(s) 300, 746
SmlI CTYRAG 2 cut(s) 134, 470
SmoI CTYRAG 2 cut(s) 134, 470
SphI GCATGC 1 cut(s) 39
Sse9I AATT 1 cut(s) 857
SseBI AGGCCT 1 cut(s) 922
SspMI CTAG 2 cut(s) 537, 653
StuI AGGCCT 1 cut(s) 922
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 910
TaaI ACNGT 1 cut(s) 745
TaiI ACGT 1 cut(s) 270
TaqI TCGA 5 cut(s) 128, 283, 471, 601, 645
TaqII GACCGA 1 cut(s) 473
TasI AATT 1 cut(s) 857
TatI WGTACW 2 cut(s) 205, 519
TfiI GAWTC 1 cut(s) 802
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 4 cut(s) 81, 222, 556, 699
TseFI GTSAC 2 cut(s) 454, 694
TseI GCWGC 2 cut(s) 82, 929
Tsp45I GTSAC 2 cut(s) 454, 694
TspDTI ATGAA 4 cut(s) 328, 333, 683, 772
TspGWI ACGGA 2 cut(s) 807, 812
TspRI CASTG 4 cut(s) 81, 222, 556, 699
Van91I CCANNNNNTGG 1 cut(s) 358
VneI GTGCAC 1 cut(s) 293
VpaK11BI GGWCC 2 cut(s) 323, 683
XceI RCATGY 2 cut(s) 39, 293
XcmI CCANNNNNNNNNTGG 2 cut(s) 109, 943
XhoI CTCGAG 1 cut(s) 470
XmiI GTMKAC 1 cut(s) 128
XspI CTAG 2 cut(s) 537, 653
Zsp2I ATGCAT 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.