Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010562

Physical Location & Seq

Genomic Coordinates Reverse (-)

459333 .. 461103

Gene Structure 1771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00730.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCAACTCATTCAAACTTCACAACCCTCATCACCAAAACACACAAATATGATAGACTCAACCCCTCCTCTCCAACACCATTACAAATCCCTCGTGCGCAACCATCATTGCCAAGGCATCGACCGCGGACAAGGAGGAGCGGTCACGGAAGAATGCCAGCTCCCGTTGATAGACCTCAACGGGCTGAATAGCCTCGACGAGAGGGAGAGGCTAGAATGCACTGCAGCTATCTGCAGAGCGTCGTCGGAGTGGGGTTTTTTTCAAGTGGTGAACCACGGGATAAGCTCCGAGCTACTACGGAATATGAAGACGGAGCAGCTCAAACTGTTTGGAGCGCCCTTCGAATGGAAAGCTACTGGCGGGCTGCTTAATAATTCGTACAGGTGGGGGACACCGACCGCTACTGGTCCGACTCAGTACTCTTGGTCCGAATCTTTTCACATTCCTGTCACAAAAATCTCGGACCAAGCTTGCTATGGGGACGATTTTAGCTCGCTCAGGGAAGAGATGGAGGAATTTGCAGGAGAAATGTCAAACCTAGCGGAGTCGCTAGCCGGGATCCTAGTGAACAACCTGGGACACCGGAAGGAAGCGCTGCAAGACATTTGTGACTCGAGCACTTGCTTTCTCCGATTGAACCGCTACCCGGCTTGTCCGATATCACCGGAGATGTTCGGCTTAGTGCCTCACACTGACAGCGATTTCCTCACAATTCTAAGCCAAGACGAAGTGGGAGGACTTCAGCTCTTGAAAGACTCCAAATGGGTTGCTGTAAAACCCAACCAAGATGCACTTATCGTAAACATCGGAGATCTTTTTCAGGCGTGGAGCAATGACGTGTACAAAAGTGTGGAGCACAAGGTGATGGCAAATGAGAAGAGGGAACGCTACTCAATAGCATACTTCATGTGCCCTTCCTACGACTCTTTAATCGGCAGTTGCAGATCACAGTCTTCCATCTATAGAAACTTCAGTTTTCGAGATTACAGAAACCAAGTCCAGCAAGATGTTCAGAAACTTGGACGCAAAGTCGGCCTTTCGAGATTCCGTCTTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy B3 DIOX_N

Protein Analysis

353

Amino Acids

39.83

Weight (kDa)

6.08

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36510 FvH4_4g36510 FvH4_4g36510
malus_domestica	MD13G1008700.v1.1 MD16G1006700.v1.1
prunus_persica	Prupe.1G344000_v2.0.a1 Prupe.1G344000_v2.0.a1
pyrus_communis	pycom13g00730 pycom16g00640
rosa_chinensis	RchiOBHm_Chr4g0446271
rosa_laevigata	RLG00000005675
rosa_multiflora	Rmu_co8482297.1_g000001 Rmu_sc0002266.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386670
rosa_rugosa	Rorug04G0369400 Rorug04G0369500
rosa_samantha	Rh4AG431200 Rh4BG440600 Rh4CG457900 Rh4DG439100
rosa_wichuraiana	Rw4G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	98
AccBSI	CCGCTC	1 cut(s)	140
AccII	CGCG	1 cut(s)	126
AciI	CCGC	7 cut(s)	124, 126, 140, 360, 399, 542, 640
AclWI	GGATC	2 cut(s)	553, 566
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	2 cut(s)	725, 955
AdeI	CACNNNGTG	1 cut(s)	862
AfaI	GTAC	3 cut(s)	380, 419, 842
AfeI	AGCGCT	1 cut(s)	594
AfiI	CCNNNNNNNGG	2 cut(s)	345, 646
AflIII	ACRYGT	1 cut(s)	837
AgsI	TTSAA	4 cut(s)	14, 263, 637, 751
AhdI	GACNNNNNGTC	1 cut(s)	1028
AjiI	CACGTC	1 cut(s)	838
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	9 cut(s)	160, 227, 285, 292, 319, 353, 470, 492, 745
AluI	AGCT	9 cut(s)	160, 227, 285, 292, 319, 353, 470, 492, 745
Alw21I	GWGCWC	2 cut(s)	620, 858
AlwI	GGATC	2 cut(s)	553, 566
Ama87I	CYCGRG	1 cut(s)	613
Aor51HI	AGCGCT	1 cut(s)	594
AoxI	GGCC	1 cut(s)	1033
ApeKI	GCWGC	4 cut(s)	224, 316, 364, 595
ApoI	RAATTY	1 cut(s)	515
Asp700I	GAANNNNTTC	1 cut(s)	435
AspLEI	GCGC	3 cut(s)	99, 337, 595
AspS9I	GGNCC	3 cut(s)	407, 426, 463
AsuC2I	CCSGG	2 cut(s)	556, 647
AsuHPI	GGTGA	4 cut(s)	24, 280, 654, 874
AsuII	TTCGAA	1 cut(s)	342
AsuNHI	GCTAGC	1 cut(s)	550
AvaI	CYCGRG	1 cut(s)	613
AvaII	GGWCC	3 cut(s)	407, 426, 463
BaeGI	GKGCMC	1 cut(s)	914
BamHI	GGATCC	1 cut(s)	558
BauI	CACGAG	1 cut(s)	92
BbsI	GAAGAC	3 cut(s)	314, 945, 1043
Bbv12I	GWGCWC	2 cut(s)	620, 858
BbvI	GCAGC	4 cut(s)	236, 328, 351, 582
BccI	CCATC	4 cut(s)	111, 502, 859, 965
BciT130I	CCWGG	1 cut(s)	575
BcnI	CCSGG	2 cut(s)	556, 647
BfaI	CTAG	4 cut(s)	212, 539, 551, 563
BfmI	CTRYAG	3 cut(s)	222, 232, 961
BfoI	RGCGCY	2 cut(s)	338, 596
BglII	AGATCT	1 cut(s)	811
BisI	GCNGC	4 cut(s)	225, 317, 365, 596
BlsI	GCNGC	4 cut(s)	226, 318, 366, 597
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	3 cut(s)	556, 575, 647
Bme18I	GGWCC	3 cut(s)	407, 426, 463
BmeRI	GACNNNNNGTC	1 cut(s)	1028
BmeT110I	CYCGRG	1 cut(s)	613
BmgBI	CACGTC	1 cut(s)	838
BmgT120I	GGNCC	3 cut(s)	407, 426, 463
BmiI	GGNNCC	1 cut(s)	560
BmrFI	CCNGG	3 cut(s)	556, 575, 647
BmsI	GCATC	2 cut(s)	126, 778
BmtI	GCTAGC	1 cut(s)	554
BpiI	GAAGAC	3 cut(s)	314, 945, 1043
Bpu10I	CCTNAGC	1 cut(s)	497
Bpu14I	TTCGAA	1 cut(s)	342
BpuMI	CCSGG	2 cut(s)	556, 647
BsaJI	CCNNGG	4 cut(s)	112, 124, 274, 574
BsaWI	WCCGGW	2 cut(s)	582, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 646
Bse1I	ACTGG	2 cut(s)	361, 409
Bse3DI	GCAATG	2 cut(s)	106, 838
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	4 cut(s)	112, 124, 274, 574
BseLI	CCNNNNNNNGG	2 cut(s)	345, 646
BseMI	GCAATG	2 cut(s)	106, 838
BseMII	CTCAG	2 cut(s)	428, 511
BseNI	ACTGG	2 cut(s)	361, 409
BseRI	GAGGAG	2 cut(s)	57, 150
BseSI	GKGCMC	1 cut(s)	914
BseXI	GCAGC	4 cut(s)	236, 328, 351, 582
Bsh1236I	CGCG	1 cut(s)	126
Bsh1285I	CGRYCG	2 cut(s)	124, 399
BshFI	GGCC	1 cut(s)	1035
BsiEI	CGRYCG	2 cut(s)	124, 399
BsiHKAI	GWGCWC	2 cut(s)	620, 858
BsiHKCI	CYCGRG	1 cut(s)	613
BsiSI	CCGG	4 cut(s)	555, 583, 647, 665
BslFI	GGGAC	3 cut(s)	403, 494, 591
BslI	CCNNNNNNNGG	2 cut(s)	345, 646
BsmFI	GGGAC	3 cut(s)	403, 494, 591
BsmI	GAATGC	2 cut(s)	158, 221
BsnI	GGCC	1 cut(s)	1035
BsoBI	CYCGRG	1 cut(s)	613
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	3 cut(s)	620, 858, 914
Bsp1407I	TGTACA	1 cut(s)	840
Bsp143I	GATC	3 cut(s)	558, 811, 944
BspACI	CCGC	7 cut(s)	124, 126, 140, 360, 399, 542, 640
BspANI	GGCC	1 cut(s)	1035
BspCNI	CTCAG	2 cut(s)	427, 510
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	560
BspMAI	CTGCAG	2 cut(s)	226, 236
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	2 cut(s)	553, 566
BspT104I	TTCGAA	1 cut(s)	342
BsrBI	CCGCTC	1 cut(s)	140
BsrDI	GCAATG	2 cut(s)	106, 838
BsrGI	TGTACA	1 cut(s)	840
BsrI	ACTGG	2 cut(s)	361, 409
BssECI	CCNNGG	4 cut(s)	112, 124, 274, 574
BssMI	GATC	3 cut(s)	558, 811, 944
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	112
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	2 cut(s)	327, 951
Bst6I	CTCTTC	2 cut(s)	498, 872
BstAUI	TGTACA	1 cut(s)	840
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	5 cut(s)	158, 362, 472, 494, 552
BstDEI	CTNAG	4 cut(s)	414, 497, 679, 716
BstDSI	CCRYGG	2 cut(s)	124, 274
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	2 cut(s)	338, 596
BstHHI	GCGC	3 cut(s)	99, 337, 595
BstKTI	GATC	3 cut(s)	561, 814, 947
BstMBI	GATC	3 cut(s)	558, 811, 944
BstMCI	CGRYCG	2 cut(s)	124, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 1032
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	3 cut(s)	554, 573, 645
BstSFI	CTRYAG	3 cut(s)	222, 232, 961
BstSLI	GKGCMC	1 cut(s)	914
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	4 cut(s)	236, 328, 351, 582
BstV2I	GAAGAC	3 cut(s)	314, 945, 1043
BstX2I	RGATCY	2 cut(s)	558, 811
BstYI	RGATCY	2 cut(s)	558, 811
BsuRI	GGCC	1 cut(s)	1035
BtgI	CCRYGG	2 cut(s)	124, 274
BtrI	CACGTC	1 cut(s)	838
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	219, 690
Cac8I	GCNNGC	5 cut(s)	158, 362, 472, 494, 552
CfoI	GCGC	3 cut(s)	99, 337, 595
Cfr13I	GGNCC	3 cut(s)	407, 426, 463
Cfr42I	CCGCGG	1 cut(s)	127
CseI	GACGC	2 cut(s)	228, 1032
Csp6I	GTAC	3 cut(s)	379, 418, 841
CviAII	CATG	1 cut(s)	907
CviQI	GTAC	3 cut(s)	379, 418, 841
DdeI	CTNAG	4 cut(s)	414, 497, 679, 716
DpnI	GATC	3 cut(s)	560, 813, 946
DpnII	GATC	3 cut(s)	558, 811, 944
DraIII	CACNNNGTG	1 cut(s)	862
DriI	GACNNNNNGTC	1 cut(s)	1028
Eam1104I	CTCTTC	2 cut(s)	498, 872
Eam1105I	GACNNNNNGTC	1 cut(s)	1028
EarI	CTCTTC	2 cut(s)	498, 872
Eco130I	CCWWGG	1 cut(s)	112
Eco32I	GATATC	1 cut(s)	660
Eco47I	GGWCC	3 cut(s)	407, 426, 463
Eco47III	AGCGCT	1 cut(s)	594
Eco57I	CTGAAG	2 cut(s)	725, 955
Eco88I	CYCGRG	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	1 cut(s)	660
EcoT14I	CCWWGG	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	1 cut(s)	910
FaiI	YATR	6 cut(s)	50, 305, 477, 901, 908, 963
FalI	AAGNNNNNCTT	4 cut(s)	777, 809, 1020, 1052
FaqI	GGGAC	3 cut(s)	403, 494, 591
FatI	CATG	1 cut(s)	906
FauI	CCCGC	1 cut(s)	353
Fnu4HI	GCNGC	4 cut(s)	225, 317, 365, 596
Fsp4HI	GCNGC	4 cut(s)	225, 317, 365, 596
FspBI	CTAG	4 cut(s)	212, 539, 551, 563
FspI	TGCGCA	1 cut(s)	98
GlaI	GCGC	3 cut(s)	98, 336, 594
GluI	GCNGC	4 cut(s)	225, 317, 365, 596
HaeII	RGCGCY	2 cut(s)	338, 596
HaeIII	GGCC	1 cut(s)	1035
HapII	CCGG	4 cut(s)	555, 583, 647, 665
HgaI	GACGC	2 cut(s)	228, 1032
HhaI	GCGC	3 cut(s)	99, 337, 595
Hin1II	CATG	1 cut(s)	910
Hin6I	GCGC	3 cut(s)	97, 335, 593
HinP1I	GCGC	3 cut(s)	97, 335, 593
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	8 cut(s)	56, 412, 431, 545, 611, 755, 923, 1044
HpaII	CCGG	4 cut(s)	555, 583, 647, 665
HphI	GGTGA	4 cut(s)	24, 280, 654, 874
Hpy166II	GTNNAC	4 cut(s)	271, 568, 802, 841
Hpy188I	TCNGA	9 cut(s)	247, 289, 411, 430, 463, 632, 657, 809, 1014
Hpy188III	TCNNGA	3 cut(s)	748, 980, 1041
Hpy8I	GTNNAC	4 cut(s)	271, 568, 802, 841
Hpy99I	CGWCG	3 cut(s)	200, 244, 247
HpyAV	CCTTC	3 cut(s)	349, 580, 924
HpyCH4III	ACNGT	2 cut(s)	327, 951
HpyCH4IV	ACGT	1 cut(s)	837
HpyCH4V	TGCA	8 cut(s)	4, 219, 224, 234, 521, 598, 791, 942
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 1032
HpyF3I	CTNAG	4 cut(s)	414, 497, 679, 716
HpySE526I	ACGT	1 cut(s)	837
Hsp92II	CATG	1 cut(s)	910
HspAI	GCGC	3 cut(s)	97, 335, 593
KspI	CCGCGG	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	558, 811, 944
LmnI	GCTCC	7 cut(s)	137, 165, 290, 313, 332, 828, 853
Lsp1109I	GCAGC	4 cut(s)	236, 328, 351, 582
LweI	GCATC	2 cut(s)	126, 778
MaeI	CTAG	4 cut(s)	212, 539, 551, 563
MaeII	ACGT	1 cut(s)	837
MaeIII	GTNAC	3 cut(s)	142, 448, 608
MalI	GATC	3 cut(s)	560, 813, 946
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	3 cut(s)	558, 811, 944
MboII	GAAGA	6 cut(s)	161, 319, 515, 889, 945, 1043
MflI	RGATCY	2 cut(s)	558, 811
MhlI	GDGCHC	3 cut(s)	620, 858, 914
MluCI	AATT	3 cut(s)	373, 515, 711
MlyI	GAGTC	6 cut(s)	50, 406, 554, 605, 749, 917
MmeI	TCCRAC	3 cut(s)	97, 225, 434
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	2 cut(s)	369, 929
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	4 cut(s)	555, 583, 647, 665
MspR9I	CCNGG	3 cut(s)	556, 575, 647
Mva1269I	GAATGC	2 cut(s)	158, 221
MvaI	CCWGG	1 cut(s)	575
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	123, 1032
NciI	CCSGG	2 cut(s)	556, 647
NdeII	GATC	3 cut(s)	558, 811, 944
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	1 cut(s)	910
NlaIV	GGNNCC	1 cut(s)	560
NmuCI	GTSAC	3 cut(s)	142, 448, 608
NsbI	TGCGCA	1 cut(s)	98
NspV	TTCGAA	1 cut(s)	342
PaeR7I	CTCGAG	1 cut(s)	613
PctI	GAATGC	2 cut(s)	158, 221
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	431, 1044
PkrI	GCNGC	4 cut(s)	226, 318, 366, 597
PleI	GAGTC	6 cut(s)	50, 406, 553, 605, 749, 917
PpsI	GAGTC	6 cut(s)	50, 406, 553, 605, 749, 917
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	1 cut(s)	560
PspPI	GGNCC	3 cut(s)	407, 426, 463
PspXI	VCTCGAGB	1 cut(s)	613
PstI	CTGCAG	2 cut(s)	226, 236
PsuI	RGATCY	2 cut(s)	558, 811
RsaI	GTAC	3 cut(s)	380, 419, 842
RsaNI	GTAC	3 cut(s)	379, 418, 841
RseI	CAYNNNNRTG	1 cut(s)	47
SacII	CCGCGG	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	369, 929
SatI	GCNGC	4 cut(s)	225, 317, 365, 596
Sau3AI	GATC	3 cut(s)	558, 811, 944
Sau96I	GGNCC	3 cut(s)	407, 426, 463
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	6 cut(s)	50, 406, 554, 605, 749, 917
ScrFI	CCNGG	3 cut(s)	556, 575, 647
SduI	GDGCHC	3 cut(s)	620, 858, 914
SfaNI	GCATC	2 cut(s)	126, 778
SfcI	CTRYAG	3 cut(s)	222, 232, 961
Sfr274I	CTCGAG	1 cut(s)	613
Sfr303I	CCGCGG	1 cut(s)	127
SfuI	TTCGAA	1 cut(s)	342
SgrBI	CCGCGG	1 cut(s)	127
SinI	GGWCC	3 cut(s)	407, 426, 463
SlaI	CTCGAG	1 cut(s)	613
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
Sse9I	AATT	3 cut(s)	373, 515, 711
SsiI	CCGC	7 cut(s)	124, 126, 140, 360, 399, 542, 640
SspMI	CTAG	4 cut(s)	212, 539, 551, 563
StyD4I	CCNGG	3 cut(s)	554, 573, 645
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	327, 951
TaiI	ACGT	1 cut(s)	840
TaqI	TCGA	7 cut(s)	120, 195, 342, 614, 979, 1040, 1054
TasI	AATT	3 cut(s)	373, 515, 711
TatI	WGTACW	2 cut(s)	417, 840
TfiI	GAWTC	2 cut(s)	431, 1044
Tru1I	TTAA	2 cut(s)	369, 929
Tru9I	TTAA	2 cut(s)	369, 929
TscAI	CASTG	2 cut(s)	226, 697
TseFI	GTSAC	3 cut(s)	142, 448, 608
TseI	GCWGC	4 cut(s)	224, 316, 364, 595
Tsp45I	GTSAC	3 cut(s)	142, 448, 608
TspDTI	ATGAA	2 cut(s)	320, 895
TspGWI	ACGGA	4 cut(s)	161, 313, 326, 1037
TspRI	CASTG	2 cut(s)	226, 697
VpaK11BI	GGWCC	3 cut(s)	407, 426, 463
XapI	RAATTY	1 cut(s)	515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XhoI	CTCGAG	1 cut(s)	613
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	4 cut(s)	212, 539, 551, 563
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.