Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010562

Physical Location & Seq

Genomic Coordinates Reverse (-)

535651 .. 537084

Gene Structure 1434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1008700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGATAGACTCAACCCCTCCTCTCCAACACCATTACATATCCCTCGTGCGCAACCATCATTGCCAAGGCATCGACCGCGGACAAGGAGCGGTCACGGAAGAATGCCAGCTCCCGTTGATAGACCTCAACGGGCTGAATAGCCTCAACGAGAGGGAGAGGCTAGAATGTGCTGCAGCCATCTGCAGAGCGTCGTCGGAGTGGGGTTTTTTTCAAGTGGTGAACCACGGGATAAGTTCCGAGCTACTACAGAATATGACGACGGAGCAGCTCAAACTCTTTGGAGCGCCCTTCGAACGGAAAGCTACTTGCGGGCTGCTCAATAATTCGTACAGGTGGGGGACACCGACTGCGACTGGTCCGACTCAGTACTCTTGGTCCGAAGCTTTTCACATTCCTGTCACAAAAATCTCGGACCAAGGTTGCTATGGGGACGATTTTAGCTCTCTCAGGGAAGTGATGGAGGAATTCGCAGGAGCAATGGCAAACCTAGCGGAGTTGCTAGCCGGGATCCTAGTGAACAACCTGGGACACCGGAAGGAAGCACTGCAAGACATTTGTGACTCGAGCACTTGCTTTCTCCGATTGAACCGCTACCCGGCTTGTCCGATATCACCGGAGATGTTCGGCTTAGTGCCTCACACTGACAGCGATTTCCTGACAATTCTAAGCCAAGACGAAGTGGGAGGACTTCAGCTCTTGAAAGACTCCAAATGGGTTGCTGTAAAACCCAACCAAGATGCACTTATCGTAAACATCGGAGATCTTTTTCAGGCGTGGAGCAATGACGAGTACAAAAGTGTGGAGCACAAGGTGATGGCAAATGAGAAGAGGGAACGCTACTCAATAGCATACTTCATGTGCCCTTCCTACGATTCTTTAATCGGTAGTTGCAGATCACAATCTTCCATCTATAGAAACTTCACTTTTCAAGATTACAGAAACCAAGTCCAGCAAGATGTTCAGAAACTTGGACACAAAGTCGGCCTTTCGAGATTCCTTCTTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy B3 DIOX_N

Protein Analysis

336

Amino Acids

37.76

Weight (kDa)

5.59

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	37 - 134	2.5e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	191 - 288	5.1e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36510 FvH4_4g36510 FvH4_4g36510
malus_domestica	MD13G1008700.v1.1 MD16G1006700.v1.1
prunus_persica	Prupe.1G344000_v2.0.a1 Prupe.1G344000_v2.0.a1
pyrus_communis	pycom13g00730 pycom16g00640
rosa_chinensis	RchiOBHm_Chr4g0446271
rosa_laevigata	RLG00000005675
rosa_multiflora	Rmu_co8482297.1_g000001 Rmu_sc0002266.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386670
rosa_rugosa	Rorug04G0369400 Rorug04G0369500
rosa_samantha	Rh4AG431200 Rh4BG440600 Rh4CG457900 Rh4DG439100
rosa_wichuraiana	Rw4G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	50
AccBSI	CCGCTC	1 cut(s)	89
AccII	CGCG	1 cut(s)	78
AciI	CCGC	6 cut(s)	76, 78, 89, 309, 491, 589
AclWI	GGATC	2 cut(s)	502, 515
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	674
AdeI	CACNNNGTG	1 cut(s)	811
AfaI	GTAC	3 cut(s)	329, 368, 791
AfiI	CCNNNNNNNGG	2 cut(s)	294, 595
AgsI	TTSAA	4 cut(s)	212, 586, 700, 929
AhdI	GACNNNNNGTC	1 cut(s)	977
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	7 cut(s)	109, 241, 268, 302, 383, 441, 694
AluI	AGCT	7 cut(s)	109, 241, 268, 302, 383, 441, 694
Alw21I	GWGCWC	2 cut(s)	569, 807
AlwI	GGATC	2 cut(s)	502, 515
Ama87I	CYCGRG	1 cut(s)	562
AoxI	GGCC	1 cut(s)	982
ApeKI	GCWGC	4 cut(s)	170, 173, 265, 313
ApoI	RAATTY	1 cut(s)	464
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	2 cut(s)	51, 286
AspS9I	GGNCC	3 cut(s)	356, 375, 412
AsuC2I	CCSGG	2 cut(s)	505, 596
AsuHPI	GGTGA	3 cut(s)	229, 603, 823
AsuII	TTCGAA	1 cut(s)	291
AsuNHI	GCTAGC	1 cut(s)	499
AvaI	CYCGRG	1 cut(s)	562
AvaII	GGWCC	3 cut(s)	356, 375, 412
BaeGI	GKGCMC	1 cut(s)	863
BamHI	GGATCC	1 cut(s)	507
BauI	CACGAG	1 cut(s)	44
Bbv12I	GWGCWC	2 cut(s)	569, 807
BbvI	GCAGC	4 cut(s)	157, 185, 277, 300
BccI	CCATC	5 cut(s)	63, 185, 451, 808, 914
BciT130I	CCWGG	1 cut(s)	524
BcnI	CCSGG	2 cut(s)	505, 596
BfaI	CTAG	4 cut(s)	161, 488, 500, 512
BfmI	CTRYAG	4 cut(s)	171, 181, 245, 910
BfoI	RGCGCY	1 cut(s)	287
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	4 cut(s)	171, 174, 266, 314
BlsI	GCNGC	4 cut(s)	172, 175, 267, 315
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	3 cut(s)	505, 524, 596
Bme18I	GGWCC	3 cut(s)	356, 375, 412
BmeRI	GACNNNNNGTC	1 cut(s)	977
BmeT110I	CYCGRG	1 cut(s)	562
BmgT120I	GGNCC	3 cut(s)	356, 375, 412
BmiI	GGNNCC	1 cut(s)	509
BmrFI	CCNGG	3 cut(s)	505, 524, 596
BmsI	GCATC	2 cut(s)	78, 727
BmtI	GCTAGC	1 cut(s)	503
Bpu14I	TTCGAA	1 cut(s)	291
BpuMI	CCSGG	2 cut(s)	505, 596
BsaBI	GATNNNNATC	1 cut(s)	898
BsaJI	CCNNGG	5 cut(s)	64, 76, 223, 415, 523
BsaWI	WCCGGW	2 cut(s)	531, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 595
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	3 cut(s)	58, 483, 787
Bse8I	GATNNNNATC	1 cut(s)	898
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	5 cut(s)	64, 76, 223, 415, 523
BseJI	GATNNNNATC	1 cut(s)	898
BseLI	CCNNNNNNNGG	2 cut(s)	294, 595
BseMI	GCAATG	3 cut(s)	58, 483, 787
BseMII	CTCAG	2 cut(s)	377, 460
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	4 cut(s)	157, 185, 277, 300
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	984
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	569, 807
BsiHKCI	CYCGRG	1 cut(s)	562
BsiSI	CCGG	4 cut(s)	504, 532, 596, 614
BslFI	GGGAC	3 cut(s)	352, 443, 540
BslI	CCNNNNNNNGG	2 cut(s)	294, 595
BsmFI	GGGAC	3 cut(s)	352, 443, 540
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	984
BsoBI	CYCGRG	1 cut(s)	562
Bsp119I	TTCGAA	1 cut(s)	291
Bsp1286I	GDGCHC	3 cut(s)	569, 807, 863
Bsp143I	GATC	3 cut(s)	507, 760, 893
BspACI	CCGC	6 cut(s)	76, 78, 89, 309, 491, 589
BspANI	GGCC	1 cut(s)	984
BspCNI	CTCAG	2 cut(s)	376, 459
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	509
BspMAI	CTGCAG	2 cut(s)	175, 185
BspOI	GCTAGC	1 cut(s)	503
BspPI	GGATC	2 cut(s)	502, 515
BspT104I	TTCGAA	1 cut(s)	291
BsrBI	CCGCTC	1 cut(s)	89
BsrDI	GCAATG	3 cut(s)	58, 483, 787
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	5 cut(s)	64, 76, 223, 415, 523
BssMI	GATC	3 cut(s)	507, 760, 893
BssSI	CACGAG	1 cut(s)	44
BssT1I	CCWWGG	2 cut(s)	64, 415
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	524
Bst6I	CTCTTC	1 cut(s)	821
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	107, 311, 501
BstDEI	CTNAG	4 cut(s)	363, 446, 628, 665
BstDSI	CCRYGG	2 cut(s)	76, 223
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	2 cut(s)	51, 286
BstKTI	GATC	3 cut(s)	510, 763, 896
BstMBI	GATC	3 cut(s)	507, 760, 893
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 488
BstNI	CCWGG	1 cut(s)	524
BstSCI	CCNGG	3 cut(s)	503, 522, 594
BstSFI	CTRYAG	4 cut(s)	171, 181, 245, 910
BstSLI	GKGCMC	1 cut(s)	863
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	4 cut(s)	157, 185, 277, 300
BstX2I	RGATCY	2 cut(s)	507, 760
BstYI	RGATCY	2 cut(s)	507, 760
BsuRI	GGCC	1 cut(s)	984
BtgI	CCRYGG	2 cut(s)	76, 223
BtsI	GCAGTG	1 cut(s)	542
BtsIMutI	CAGTG	2 cut(s)	542, 639
Cac8I	GCNNGC	3 cut(s)	107, 311, 501
CfoI	GCGC	2 cut(s)	51, 286
Cfr13I	GGNCC	3 cut(s)	356, 375, 412
Cfr42I	CCGCGG	1 cut(s)	79
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	3 cut(s)	328, 367, 790
CviAII	CATG	1 cut(s)	856
CviQI	GTAC	3 cut(s)	328, 367, 790
DdeI	CTNAG	4 cut(s)	363, 446, 628, 665
DpnI	GATC	3 cut(s)	509, 762, 895
DpnII	GATC	3 cut(s)	507, 760, 893
DraIII	CACNNNGTG	1 cut(s)	811
DriI	GACNNNNNGTC	1 cut(s)	977
Eam1104I	CTCTTC	1 cut(s)	821
Eam1105I	GACNNNNNGTC	1 cut(s)	977
EarI	CTCTTC	1 cut(s)	821
Eco130I	CCWWGG	2 cut(s)	64, 415
Eco32I	GATATC	1 cut(s)	609
Eco47I	GGWCC	3 cut(s)	356, 375, 412
Eco57I	CTGAAG	1 cut(s)	674
Eco88I	CYCGRG	1 cut(s)	562
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	522
EcoRV	GATATC	1 cut(s)	609
EcoT14I	CCWWGG	2 cut(s)	64, 415
ErhI	CCWWGG	2 cut(s)	64, 415
FaeI	CATG	1 cut(s)	859
FaiI	YATR	6 cut(s)	38, 254, 426, 850, 857, 912
FalI	AAGNNNNNCTT	4 cut(s)	726, 758, 969, 1001
FaqI	GGGAC	3 cut(s)	352, 443, 540
FatI	CATG	1 cut(s)	855
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	4 cut(s)	171, 174, 266, 314
Fsp4HI	GCNGC	4 cut(s)	171, 174, 266, 314
FspBI	CTAG	4 cut(s)	161, 488, 500, 512
FspI	TGCGCA	1 cut(s)	50
GlaI	GCGC	2 cut(s)	50, 285
GluI	GCNGC	4 cut(s)	171, 174, 266, 314
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	984
HapII	CCGG	4 cut(s)	504, 532, 596, 614
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	2 cut(s)	51, 286
Hin1II	CATG	1 cut(s)	859
Hin6I	GCGC	2 cut(s)	49, 284
HinP1I	GCGC	2 cut(s)	49, 284
HindIII	AAGCTT	1 cut(s)	381
HinfI	GANTC	6 cut(s)	8, 361, 560, 704, 872, 993
HpaII	CCGG	4 cut(s)	504, 532, 596, 614
HphI	GGTGA	3 cut(s)	229, 603, 823
Hpy166II	GTNNAC	3 cut(s)	220, 517, 751
Hpy188I	TCNGA	9 cut(s)	196, 238, 360, 379, 412, 581, 606, 758, 963
Hpy188III	TCNNGA	4 cut(s)	655, 697, 929, 990
Hpy8I	GTNNAC	3 cut(s)	220, 517, 751
Hpy99I	CGWCG	3 cut(s)	193, 196, 262
HpyAV	CCTTC	4 cut(s)	298, 529, 873, 1007
HpyCH4V	TGCA	5 cut(s)	173, 183, 547, 740, 891
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 488
HpyF3I	CTNAG	4 cut(s)	363, 446, 628, 665
Hsp92II	CATG	1 cut(s)	859
HspAI	GCGC	2 cut(s)	49, 284
KspI	CCGCGG	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	507, 760, 893
LmnI	GCTCC	7 cut(s)	86, 114, 262, 281, 473, 777, 802
Lsp1109I	GCAGC	4 cut(s)	157, 185, 277, 300
LweI	GCATC	2 cut(s)	78, 727
MaeI	CTAG	4 cut(s)	161, 488, 500, 512
MaeIII	GTNAC	3 cut(s)	91, 397, 557
MalI	GATC	3 cut(s)	509, 762, 895
MbiI	CCGCTC	1 cut(s)	89
MboI	GATC	3 cut(s)	507, 760, 893
MboII	GAAGA	4 cut(s)	110, 838, 894, 992
MflI	RGATCY	2 cut(s)	507, 760
MhlI	GDGCHC	3 cut(s)	569, 807, 863
MluCI	AATT	3 cut(s)	322, 464, 660
MlyI	GAGTC	4 cut(s)	2, 355, 554, 698
MmeI	TCCRAC	3 cut(s)	49, 174, 383
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	1 cut(s)	878
MspA1I	CMGCKG	1 cut(s)	78
MspI	CCGG	4 cut(s)	504, 532, 596, 614
MspR9I	CCNGG	3 cut(s)	505, 524, 596
Mva1269I	GAATGC	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	524
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	75, 488
NciI	CCSGG	2 cut(s)	505, 596
NdeII	GATC	3 cut(s)	507, 760, 893
NheI	GCTAGC	1 cut(s)	499
NlaIII	CATG	1 cut(s)	859
NlaIV	GGNNCC	1 cut(s)	509
NmuCI	GTSAC	3 cut(s)	91, 397, 557
NsbI	TGCGCA	1 cut(s)	50
NspV	TTCGAA	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	562
PctI	GAATGC	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	872, 993
PkrI	GCNGC	4 cut(s)	172, 175, 267, 315
PleI	GAGTC	4 cut(s)	2, 355, 554, 698
PpsI	GAGTC	4 cut(s)	2, 355, 554, 698
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	509
PspPI	GGNCC	3 cut(s)	356, 375, 412
PspXI	VCTCGAGB	1 cut(s)	562
PstI	CTGCAG	2 cut(s)	175, 185
PsuI	RGATCY	2 cut(s)	507, 760
RsaI	GTAC	3 cut(s)	329, 368, 791
RsaNI	GTAC	3 cut(s)	328, 367, 790
SacII	CCGCGG	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	878
SatI	GCNGC	4 cut(s)	171, 174, 266, 314
Sau3AI	GATC	3 cut(s)	507, 760, 893
Sau96I	GGNCC	3 cut(s)	356, 375, 412
ScaI	AGTACT	1 cut(s)	368
SchI	GAGTC	4 cut(s)	2, 355, 554, 698
ScrFI	CCNGG	3 cut(s)	505, 524, 596
SduI	GDGCHC	3 cut(s)	569, 807, 863
SfaNI	GCATC	2 cut(s)	78, 727
SfcI	CTRYAG	4 cut(s)	171, 181, 245, 910
Sfr274I	CTCGAG	1 cut(s)	562
Sfr303I	CCGCGG	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	291
SgrBI	CCGCGG	1 cut(s)	79
SinI	GGWCC	3 cut(s)	356, 375, 412
SlaI	CTCGAG	1 cut(s)	562
SmlI	CTYRAG	1 cut(s)	562
SmoI	CTYRAG	1 cut(s)	562
Sse9I	AATT	3 cut(s)	322, 464, 660
SsiI	CCGC	6 cut(s)	76, 78, 89, 309, 491, 589
SspMI	CTAG	4 cut(s)	161, 488, 500, 512
StyD4I	CCNGG	3 cut(s)	503, 522, 594
StyI	CCWWGG	2 cut(s)	64, 415
TaqI	TCGA	5 cut(s)	72, 291, 563, 989, 1003
TasI	AATT	3 cut(s)	322, 464, 660
TatI	WGTACW	2 cut(s)	366, 789
TfiI	GAWTC	2 cut(s)	872, 993
Tru1I	TTAA	1 cut(s)	878
Tru9I	TTAA	1 cut(s)	878
TscAI	CASTG	2 cut(s)	549, 646
TseFI	GTSAC	3 cut(s)	91, 397, 557
TseI	GCWGC	4 cut(s)	170, 173, 265, 313
Tsp45I	GTSAC	3 cut(s)	91, 397, 557
TspDTI	ATGAA	1 cut(s)	844
TspGWI	ACGGA	3 cut(s)	110, 275, 310
TspRI	CASTG	2 cut(s)	549, 646
VpaK11BI	GGWCC	3 cut(s)	356, 375, 412
XapI	RAATTY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XhoI	CTCGAG	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	4 cut(s)	161, 488, 500, 512
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.