Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010562

Physical Location & Seq

Genomic Coordinates Forward (+)

32238677 .. 32241847

Gene Structure 3171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G344000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGATAGAATCAAACCCACCTCTCCTACACCATTATGGAACACTTGTGCGCAATCCATCCAATCTTGTTCAAGTTGATCAGCAACGCCACATTGGAGGGCTGGTCCCAGCTGAAGAATGCCAGCTTCCATTGATAGACCTTCATGGTTTGAAAATCCCTGACACAAGGGAGAGCCTAGAATGCGCTCGAGCCATCTGCCGAGCGTCGTCGGAGTGGGGGTTCTTCCAAGTGCTGAACCACGGCATCAGCCCTGAGCTGCTGCAGAGTATGAGGAGAGAGCAGCTCAAGCTGTTTGCTGCACCGTTTGAGAGAAAAGCTACTTGTGGGCTTCTCAACAATTCATACAGGTGGGGGACTCCAACCGCAACGCGGCCAACTCAATACTCTTGGTCTGAAGCTTTTCACATTCCTGTCACCAAAATCTCAGAAGAAGCTAGCTATGGGGAGGACTTTGGTTCTCTCAGGGGAGTGATGGAGGAATTTGCAGCAGCCATGTCAAACCTGGCAAATTTGCTTGCTGGGATTCTAGCGAACAATCTGGGACACCGAAAGGAATCGTTAGAAGACATTTGTGACTCGAGCACTTGCTTTCTTCGATTGAATCGCTACCCGGCTTGTCCAATATCCCCAGAGATGTTTGGCTTGGTGCCTCACACTGACAGTGATTTCCTCACAATTCTTTGCCAAGACCAAGTAGGAGGACTTCAGCTCATGAAAGATTCCAAATGGGTTGCTGTGAAACCCAATCCAGACGCACTTATCGTTAACATTGGAGATCTTTTTCAGGCGTGGAGCAATGATGTGTACAAAAGTGTGGAGCACAAGGTGATGGCAAACGAGAAGATGGAACGCTACTCAATCGCCTACTTCATGTGCCCTTCCTATGATTCCTTAATTGGGAGTTGCAGCAGCACATCGCCAGAACCTTCTTCCGTCTATAGAAAGTTCACTTTTCGAGAATACAGGAACCAAATTCAACAGGATGTTCAGAAACTTGGCCACAAAGTTGGCCTCTCAAGATTTCTTCTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy B3 DIOX_N

Protein Analysis

345

Amino Acids

38.75

Weight (kDa)

6.08

Isoelectric Point (pI)

54.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36510 FvH4_4g36510 FvH4_4g36510
malus_domestica	MD13G1008700.v1.1 MD16G1006700.v1.1
prunus_persica	Prupe.1G344000_v2.0.a1 Prupe.1G344000_v2.0.a1
pyrus_communis	pycom13g00730 pycom16g00640
rosa_chinensis	RchiOBHm_Chr4g0446271
rosa_laevigata	RLG00000005675
rosa_multiflora	Rmu_co8482297.1_g000001 Rmu_sc0002266.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386670
rosa_rugosa	Rorug04G0369400 Rorug04G0369500
rosa_samantha	Rh4AG431200 Rh4BG440600 Rh4CG457900 Rh4DG439100
rosa_wichuraiana	Rw4G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	646
AccII	CGCG	1 cut(s)	370
AciI	CCGC	2 cut(s)	363, 370
AcoI	YGGCCR	2 cut(s)	371, 997
AcsI	RAATTY	3 cut(s)	479, 508, 972
AcuI	CTGAAG	3 cut(s)	132, 414, 689
AdeI	CACNNNGTG	1 cut(s)	826
AfaI	GTAC	1 cut(s)	806
AfiI	CCNNNNNNNGG	2 cut(s)	369, 897
AgsI	TTSAA	5 cut(s)	71, 151, 601, 977, 1031
AjnI	CCWGG	1 cut(s)	501
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
Alw21I	GWGCWC	2 cut(s)	584, 822
Ama87I	CYCGRG	2 cut(s)	186, 577
AoxI	GGCC	3 cut(s)	371, 997, 1009
ApeKI	GCWGC	8 cut(s)	256, 259, 280, 296, 485, 488, 906, 909
ApoI	RAATTY	3 cut(s)	479, 508, 972
Asp700I	GAANNNNTTC	1 cut(s)	399
AspLEI	GCGC	2 cut(s)	51, 185
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	611
AsuHPI	GGTGA	2 cut(s)	406, 838
AsuNHI	GCTAGC	1 cut(s)	434
AvaI	CYCGRG	2 cut(s)	186, 577
AvaII	GGWCC	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	878
BalI	TGGCCA	1 cut(s)	999
BanI	GGYRCC	1 cut(s)	646
BarI	GAAGNNNNNNTAC	2 cut(s)	687, 719
BbsI	GAAGAC	1 cut(s)	570
Bbv12I	GWGCWC	2 cut(s)	584, 822
BbvI	GCAGC	8 cut(s)	243, 246, 283, 292, 497, 500, 918, 921
BccI	CCATC	5 cut(s)	64, 200, 466, 823, 838
BceAI	ACGGC	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BciT130I	CCWGG	1 cut(s)	503
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	611
BfaI	CTAG	3 cut(s)	176, 435, 527
BfmI	CTRYAG	2 cut(s)	260, 937
BglII	AGATCT	1 cut(s)	775
BisI	GCNGC	9 cut(s)	257, 260, 281, 297, 371, 486, 489, 907, 910
BlsI	GCNGC	9 cut(s)	258, 261, 282, 298, 372, 487, 490, 908, 911
Bme1390I	CCNGG	2 cut(s)	503, 611
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	2 cut(s)	186, 577
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	3 cut(s)	105, 648, 968
BmrFI	CCNGG	2 cut(s)	503, 611
BmsI	GCATC	1 cut(s)	252
BmtI	GCTAGC	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	570
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	269, 1000
BpuMI	CCSGG	1 cut(s)	611
BsaJI	CCNNGG	1 cut(s)	238
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 203, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 897
Bse3DI	GCAATG	1 cut(s)	802
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	2 cut(s)	56, 988
BseLI	CCNNNNNNNGG	2 cut(s)	369, 897
BseMI	GCAATG	1 cut(s)	802
BseMII	CTCAG	3 cut(s)	243, 438, 475
BseRI	GAGGAG	1 cut(s)	286
BseSI	GKGCMC	1 cut(s)	878
BseXI	GCAGC	8 cut(s)	243, 246, 283, 292, 497, 500, 918, 921
BseYI	CCCAGC	2 cut(s)	106, 518
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	370
BshFI	GGCC	3 cut(s)	373, 999, 1011
BshNI	GGYRCC	1 cut(s)	646
BsiHKAI	GWGCWC	2 cut(s)	584, 822
BsiHKCI	CYCGRG	2 cut(s)	186, 577
BsiSI	CCGG	1 cut(s)	611
BslFI	GGGAC	3 cut(s)	89, 367, 555
BslI	CCNNNNNNNGG	2 cut(s)	369, 897
BsmFI	GGGAC	3 cut(s)	89, 367, 555
BsmI	GAATGC	2 cut(s)	122, 185
BsnI	GGCC	3 cut(s)	373, 999, 1011
BsoBI	CYCGRG	2 cut(s)	186, 577
Bsp1286I	GDGCHC	3 cut(s)	584, 822, 878
Bsp1407I	TGTACA	1 cut(s)	804
Bsp143I	GATC	2 cut(s)	76, 775
BspACI	CCGC	2 cut(s)	363, 370
BspANI	GGCC	3 cut(s)	373, 999, 1011
BspCNI	CTCAG	3 cut(s)	244, 437, 474
BspFNI	CGCG	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	711
BspLI	GGNNCC	3 cut(s)	105, 648, 968
BspMAI	CTGCAG	1 cut(s)	264
BspOI	GCTAGC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	646
BsrDI	GCAATG	1 cut(s)	802
BsrGI	TGTACA	1 cut(s)	804
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	2 cut(s)	76, 775
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	2 cut(s)	303, 662
BstAUI	TGTACA	1 cut(s)	804
BstC8I	GCNNGC	3 cut(s)	122, 436, 516
BstDEI	CTNAG	3 cut(s)	252, 424, 461
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	56, 988
BstFNI	CGCG	1 cut(s)	370
BstHHI	GCGC	2 cut(s)	51, 185
BstKTI	GATC	2 cut(s)	79, 778
BstMBI	GATC	2 cut(s)	76, 775
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 286
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	501, 609
BstSFI	CTRYAG	2 cut(s)	260, 937
BstSLI	GKGCMC	1 cut(s)	878
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	8 cut(s)	243, 246, 283, 292, 497, 500, 918, 921
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	1 cut(s)	775
BstXI	CCANNNNNNTGG	1 cut(s)	1007
BstYI	RGATCY	1 cut(s)	775
BsuRI	GGCC	3 cut(s)	373, 999, 1011
BtgI	CCRYGG	1 cut(s)	238
BtgZI	GCGATG	1 cut(s)	900
BtsCI	GGATG	2 cut(s)	56, 988
BtsIMutI	CAGTG	2 cut(s)	654, 667
Cac8I	GCNNGC	3 cut(s)	122, 436, 516
CciI	TCATGA	1 cut(s)	711
CfoI	GCGC	2 cut(s)	51, 185
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	2 cut(s)	192, 761
Csp6I	GTAC	1 cut(s)	805
CviAII	CATG	4 cut(s)	143, 493, 712, 871
CviQI	GTAC	1 cut(s)	805
DdeI	CTNAG	3 cut(s)	252, 424, 461
DpnI	GATC	2 cut(s)	78, 777
DpnII	GATC	2 cut(s)	76, 775
DraIII	CACNNNGTG	1 cut(s)	826
EaeI	YGGCCR	2 cut(s)	371, 997
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	132, 414, 689
Eco88I	CYCGRG	2 cut(s)	186, 577
EcoRII	CCWGG	1 cut(s)	501
FaeI	CATG	4 cut(s)	146, 496, 715, 874
FaqI	GGGAC	3 cut(s)	89, 367, 555
FatI	CATG	4 cut(s)	142, 492, 711, 870
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	9 cut(s)	257, 260, 281, 297, 371, 486, 489, 907, 910
FokI	GGATG	2 cut(s)	43, 995
Fsp4HI	GCNGC	9 cut(s)	257, 260, 281, 297, 371, 486, 489, 907, 910
FspBI	CTAG	3 cut(s)	176, 435, 527
FspI	TGCGCA	1 cut(s)	50
GlaI	GCGC	2 cut(s)	50, 184
GluI	GCNGC	9 cut(s)	257, 260, 281, 297, 371, 486, 489, 907, 910
GsaI	CCCAGC	2 cut(s)	110, 522
HaeIII	GGCC	3 cut(s)	373, 999, 1011
HapII	CCGG	1 cut(s)	611
HgaI	GACGC	2 cut(s)	192, 761
HhaI	GCGC	2 cut(s)	51, 185
Hin1II	CATG	4 cut(s)	146, 496, 715, 874
Hin6I	GCGC	2 cut(s)	49, 183
HinP1I	GCGC	2 cut(s)	49, 183
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	8 cut(s)	8, 355, 523, 554, 575, 601, 719, 887
HpaI	GTTAAC	1 cut(s)	766
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	2 cut(s)	406, 838
Hpy166II	GTNNAC	3 cut(s)	766, 805, 948
Hpy188I	TCNGA	4 cut(s)	211, 394, 427, 990
Hpy188III	TCNNGA	4 cut(s)	712, 749, 956, 1017
Hpy8I	GTNNAC	3 cut(s)	766, 805, 948
Hpy99I	CGWCG	2 cut(s)	208, 211
HpyAV	CCTTC	3 cut(s)	149, 888, 936
HpyCH4III	ACNGT	2 cut(s)	303, 662
HpyCH4V	TGCA	4 cut(s)	262, 299, 485, 906
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 286
HpyF3I	CTNAG	3 cut(s)	252, 424, 461
Hsp92II	CATG	4 cut(s)	146, 496, 715, 874
HspAI	GCGC	2 cut(s)	49, 183
Ksp22I	TGATCA	1 cut(s)	76
KspAI	GTTAAC	1 cut(s)	766
Kzo9I	GATC	2 cut(s)	76, 775
LmnI	GCTCC	2 cut(s)	792, 817
Lsp1109I	GCAGC	8 cut(s)	243, 246, 283, 292, 497, 500, 918, 921
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	3 cut(s)	176, 435, 527
MaeIII	GTNAC	2 cut(s)	412, 572
MalI	GATC	2 cut(s)	78, 777
MboI	GATC	2 cut(s)	76, 775
MboII	GAAGA	9 cut(s)	125, 214, 440, 575, 584, 853, 921, 1016, 1019
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	3 cut(s)	584, 822, 878
MlsI	TGGCCA	1 cut(s)	999
MluCI	AATT	6 cut(s)	337, 479, 508, 675, 894, 972
MluNI	TGGCCA	1 cut(s)	999
MlyI	GAGTC	2 cut(s)	349, 569
MmeI	TCCRAC	2 cut(s)	189, 383
MnlI	CCTC	9 cut(s)	30, 89, 264, 439, 469, 660, 680, 692, 1022
Mox20I	TGGCCA	1 cut(s)	999
MroXI	GAANNNNTTC	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	999
MseI	TTAA	2 cut(s)	765, 893
MslI	CAYNNNNRTG	2 cut(s)	33, 346
Msp20I	TGGCCA	1 cut(s)	999
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	2 cut(s)	503, 611
Mva1269I	GAATGC	2 cut(s)	122, 185
MvaI	CCWGG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	370
MwoI	GCNNNNNNNGC	2 cut(s)	180, 286
NciI	CCSGG	1 cut(s)	611
NdeII	GATC	2 cut(s)	76, 775
NheI	GCTAGC	1 cut(s)	434
NlaIII	CATG	4 cut(s)	146, 496, 715, 874
NlaIV	GGNNCC	3 cut(s)	105, 648, 968
NmeAIII	GCCGAG	1 cut(s)	224
NmuCI	GTSAC	2 cut(s)	412, 572
NsbI	TGCGCA	1 cut(s)	50
PaeR7I	CTCGAG	2 cut(s)	186, 577
PagI	TCATGA	1 cut(s)	711
PcsI	WCGNNNNNNNCGW	1 cut(s)	759
PctI	GAATGC	2 cut(s)	122, 185
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	6 cut(s)	8, 523, 554, 601, 719, 887
PkrI	GCNGC	9 cut(s)	258, 261, 282, 298, 372, 487, 490, 908, 911
PleI	GAGTC	2 cut(s)	349, 569
PpsI	GAGTC	2 cut(s)	349, 569
Psp6I	CCWGG	1 cut(s)	501
PspFI	CCCAGC	2 cut(s)	106, 518
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	3 cut(s)	105, 648, 968
PspPI	GGNCC	1 cut(s)	103
PspXI	VCTCGAGB	2 cut(s)	186, 577
PstI	CTGCAG	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	775
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
RseI	CAYNNNNRTG	2 cut(s)	33, 346
SaqAI	TTAA	2 cut(s)	765, 893
SatI	GCNGC	9 cut(s)	257, 260, 281, 297, 371, 486, 489, 907, 910
Sau3AI	GATC	2 cut(s)	76, 775
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	2 cut(s)	349, 569
ScrFI	CCNGG	2 cut(s)	503, 611
SduI	GDGCHC	3 cut(s)	584, 822, 878
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	2 cut(s)	260, 937
Sfr274I	CTCGAG	2 cut(s)	186, 577
SinI	GGWCC	1 cut(s)	103
SlaI	CTCGAG	2 cut(s)	186, 577
SmiMI	CAYNNNNRTG	2 cut(s)	33, 346
SmlI	CTYRAG	4 cut(s)	186, 284, 577, 1015
SmoI	CTYRAG	4 cut(s)	186, 284, 577, 1015
Sse9I	AATT	6 cut(s)	337, 479, 508, 675, 894, 972
SsiI	CCGC	2 cut(s)	363, 370
SspMI	CTAG	3 cut(s)	176, 435, 527
StyD4I	CCNGG	2 cut(s)	501, 609
TaaI	ACNGT	2 cut(s)	303, 662
TaqI	TCGA	4 cut(s)	187, 578, 595, 955
TasI	AATT	6 cut(s)	337, 479, 508, 675, 894, 972
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	1 cut(s)	373
TfiI	GAWTC	6 cut(s)	8, 523, 554, 601, 719, 887
Tru1I	TTAA	2 cut(s)	765, 893
Tru9I	TTAA	2 cut(s)	765, 893
TscAI	CASTG	2 cut(s)	661, 667
TseFI	GTSAC	2 cut(s)	412, 572
TseI	GCWGC	8 cut(s)	256, 259, 280, 296, 485, 488, 906, 909
Tsp45I	GTSAC	2 cut(s)	412, 572
TspDTI	ATGAA	4 cut(s)	131, 330, 728, 859
TspGWI	ACGGA	1 cut(s)	922
TspRI	CASTG	2 cut(s)	661, 667
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	3 cut(s)	479, 508, 972
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XhoI	CTCGAG	2 cut(s)	186, 577
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	3 cut(s)	176, 435, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.