Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010562

Physical Location & Seq

Genomic Coordinates Reverse (-)

384595 .. 386056

Gene Structure 1462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g00640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGATAGAATCAATCCCTCCTCTCCAACAACATTACAAAACCCTCGTGCGCAACCTTCACTGCCACGGCACCGACCACGGACAAGGACCGGTCACGGAAGAATGCCAGCTACCGTTGATAGACCTCAACGGGCTGAACAGCCTCGATGAGAGGGAGAGGCTAGAATGCGCAGCAGCCATCTGCAGCGCGTCGTCGGAGTGGGGGTTTTTTCAAGTGGTGAACCACGGGATAAGGCCCGAGCTACTAAAGAACATGAAGACGGAGCAGCTCAACCTGTTTGGAGCGCCCTTCGAGCAGAAGGCTACTTGCGGGCTGCTCAATAATTCGTACAGGTGGGGGACGCCGAGCGCGACTCGTCCAACTCAGTACTCCTGGTCCGAAGCTTTTCACATTCCTGTCACAAAAATCTCGGACCAAGCTTGTTATGGGGACGGTTTTAGCTCTCTCAGGAAAGTGATGGAAGTATTTGCAGGAGCAATGGCAAACCTGGCGGAGTTGCTAGCCGGGATTCTAGTGAACAACCTGGGCCACCGGAAGGAAGCGCTGCAAGACATTTGTGACTCGAGCACTTGCTTTCTCCGATTGAACCGCTACCCGGCTTGTCCGATATCACCGGAGATGTTCGGCTTAGTGCCTCACACTGACAGCGATTTCCTCACAATTCTAAGCCAAGACGAAGTGGGAGGACTTCAGCTCTTGAAAGACTCCAAATGGGTTGCTGTAAAGCCTAACCAAGATGCACTTATCGTTAACATCGGAGATCTTTTTCAGGCGTGGAGCAATGATGCGTACAAAAGTGTGGAGCACAAGGTGATGGCAAACGAGAAGAGGGAACGTTACTCAGTAGCATACTTCATGTGCCCTTCCTACGATTCTTTAATCGGGAGTTGCAGATCACAATCTTCCATCTACAGAAACTTCACTTTTCGAGATTACAGAAATCAAGTCCAGCAAGATGTTCAGACACTTGGACACAAAGTCGGCCTTTCGAGATTCCTTCTTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy B3 DIOX_N

Protein Analysis

336

Amino Acids

37.72

Weight (kDa)

6.21

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	37 - 134	1.6e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	191 - 288	1.3e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36510 FvH4_4g36510 FvH4_4g36510
malus_domestica	MD13G1008700.v1.1 MD16G1006700.v1.1
prunus_persica	Prupe.1G344000_v2.0.a1 Prupe.1G344000_v2.0.a1
pyrus_communis	pycom13g00730 pycom16g00640
rosa_chinensis	RchiOBHm_Chr4g0446271
rosa_laevigata	RLG00000005675
rosa_multiflora	Rmu_co8482297.1_g000001 Rmu_sc0002266.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386670
rosa_rugosa	Rorug04G0369400 Rorug04G0369500
rosa_samantha	Rh4AG431200 Rh4BG440600 Rh4CG457900 Rh4DG439100
rosa_wichuraiana	Rw4G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	50, 169
AccB1I	GGYRCC	1 cut(s)	68
AccII	CGCG	2 cut(s)	188, 350
AciI	CCGC	3 cut(s)	309, 491, 589
AclI	AACGTT	1 cut(s)	835
AcuI	CTGAAG	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	341
AdeI	CACNNNGTG	1 cut(s)	811
AfaI	GTAC	3 cut(s)	329, 368, 791
AfeI	AGCGCT	1 cut(s)	543
AfiI	CCNNNNNNNGG	2 cut(s)	535, 595
AgeI	ACCGGT	1 cut(s)	88
AgsI	TTSAA	3 cut(s)	212, 586, 700
AhdI	GACNNNNNGTC	1 cut(s)	977
AjnI	CCWGG	3 cut(s)	371, 486, 522
AluBI	AGCT	7 cut(s)	109, 241, 268, 383, 419, 441, 694
AluI	AGCT	7 cut(s)	109, 241, 268, 383, 419, 441, 694
Alw21I	GWGCWC	2 cut(s)	569, 807
Ama87I	CYCGRG	2 cut(s)	236, 562
Aor51HI	AGCGCT	1 cut(s)	543
AoxI	GGCC	3 cut(s)	233, 526, 982
ApeKI	GCWGC	6 cut(s)	170, 173, 183, 265, 313, 544
AsiGI	ACCGGT	1 cut(s)	88
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	6 cut(s)	51, 170, 188, 286, 350, 544
AspS9I	GGNCC	5 cut(s)	86, 234, 375, 412, 526
AsuC2I	CCSGG	2 cut(s)	505, 596
AsuHPI	GGTGA	3 cut(s)	229, 603, 823
AsuNHI	GCTAGC	1 cut(s)	499
AvaI	CYCGRG	2 cut(s)	236, 562
AvaII	GGWCC	3 cut(s)	86, 375, 412
BaeGI	GKGCMC	1 cut(s)	863
BanI	GGYRCC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	569, 807
BbvI	GCAGC	6 cut(s)	182, 185, 195, 277, 300, 531
BccI	CCATC	4 cut(s)	185, 451, 808, 914
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	3 cut(s)	373, 488, 524
BcnI	CCSGG	2 cut(s)	505, 596
BfaI	CTAG	3 cut(s)	161, 500, 512
BfmI	CTRYAG	2 cut(s)	181, 910
BfoI	RGCGCY	2 cut(s)	287, 545
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	6 cut(s)	171, 174, 184, 266, 314, 545
BlsI	GCNGC	6 cut(s)	172, 175, 185, 267, 315, 546
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	5 cut(s)	373, 488, 505, 524, 596
Bme18I	GGWCC	3 cut(s)	86, 375, 412
BmeRI	GACNNNNNGTC	1 cut(s)	977
BmeT110I	CYCGRG	2 cut(s)	236, 562
BmgT120I	GGNCC	5 cut(s)	86, 234, 375, 412, 526
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	5 cut(s)	373, 488, 505, 524, 596
BmsI	GCATC	2 cut(s)	727, 775
BmtI	GCTAGC	1 cut(s)	503
BpiI	GAAGAC	1 cut(s)	263
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BpuMI	CCSGG	2 cut(s)	505, 596
BsaBI	GATNNNNATC	1 cut(s)	898
BsaHI	GRCGYC	1 cut(s)	341
BsaJI	CCNNGG	4 cut(s)	64, 76, 223, 523
BsaWI	WCCGGW	3 cut(s)	88, 531, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	2 cut(s)	535, 595
Bse118I	RCCGGY	1 cut(s)	88
Bse3DI	GCAATG	2 cut(s)	483, 787
Bse8I	GATNNNNATC	1 cut(s)	898
BseBI	CCWGG	3 cut(s)	373, 488, 524
BseDI	CCNNGG	4 cut(s)	64, 76, 223, 523
BseJI	GATNNNNATC	1 cut(s)	898
BseLI	CCNNNNNNNGG	2 cut(s)	535, 595
BseMI	GCAATG	2 cut(s)	483, 787
BseMII	CTCAG	3 cut(s)	377, 460, 855
BseRI	GAGGAG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	6 cut(s)	182, 185, 195, 277, 300, 531
Bsh1236I	CGCG	2 cut(s)	188, 350
BshFI	GGCC	3 cut(s)	235, 528, 984
BshNI	GGYRCC	1 cut(s)	68
BshTI	ACCGGT	1 cut(s)	88
BsiHKAI	GWGCWC	2 cut(s)	569, 807
BsiHKCI	CYCGRG	2 cut(s)	236, 562
BsiSI	CCGG	5 cut(s)	89, 504, 532, 596, 614
BslFI	GGGAC	2 cut(s)	352, 443
BslI	CCNNNNNNNGG	2 cut(s)	535, 595
BsmFI	GGGAC	2 cut(s)	352, 443
BsmI	GAATGC	2 cut(s)	107, 170
BsnI	GGCC	3 cut(s)	235, 528, 984
BsoBI	CYCGRG	2 cut(s)	236, 562
Bsp1286I	GDGCHC	3 cut(s)	569, 807, 863
Bsp143I	GATC	2 cut(s)	760, 893
BspACI	CCGC	3 cut(s)	309, 491, 589
BspANI	GGCC	3 cut(s)	235, 528, 984
BspCNI	CTCAG	3 cut(s)	376, 459, 854
BspFNI	CGCG	2 cut(s)	188, 350
BspLI	GGNNCC	1 cut(s)	70
BspMAI	CTGCAG	1 cut(s)	185
BspOI	GCTAGC	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	68
BsrDI	GCAATG	2 cut(s)	483, 787
BsrFI	RCCGGY	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	4 cut(s)	64, 76, 223, 523
BssMI	GATC	2 cut(s)	760, 893
BssNI	GRCGYC	1 cut(s)	341
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	3 cut(s)	373, 488, 524
Bst4CI	ACNGT	2 cut(s)	114, 434
Bst6I	CTCTTC	1 cut(s)	821
BstACI	GRCGYC	1 cut(s)	341
BstC8I	GCNNGC	3 cut(s)	107, 311, 501
BstDEI	CTNAG	5 cut(s)	363, 446, 628, 665, 841
BstDSI	CCRYGG	3 cut(s)	64, 76, 223
BstFNI	CGCG	2 cut(s)	188, 350
BstH2I	RGCGCY	2 cut(s)	287, 545
BstHHI	GCGC	6 cut(s)	51, 170, 188, 286, 350, 544
BstKTI	GATC	2 cut(s)	763, 896
BstMBI	GATC	2 cut(s)	760, 893
BstMWI	GCNNNNNNNGC	2 cut(s)	292, 488
BstNI	CCWGG	3 cut(s)	373, 488, 524
BstSCI	CCNGG	5 cut(s)	371, 486, 503, 522, 594
BstSFI	CTRYAG	2 cut(s)	181, 910
BstSLI	GKGCMC	1 cut(s)	863
BstUI	CGCG	2 cut(s)	188, 350
BstV1I	GCAGC	6 cut(s)	182, 185, 195, 277, 300, 531
BstV2I	GAAGAC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	760
BsuRI	GGCC	3 cut(s)	235, 528, 984
BtgI	CCRYGG	3 cut(s)	64, 76, 223
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	58, 639
Cac8I	GCNNGC	3 cut(s)	107, 311, 501
CfoI	GCGC	6 cut(s)	51, 170, 188, 286, 350, 544
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	5 cut(s)	86, 234, 375, 412, 526
CseI	GACGC	2 cut(s)	177, 349
Csp6I	GTAC	3 cut(s)	328, 367, 790
CspAI	ACCGGT	1 cut(s)	88
CviAII	CATG	2 cut(s)	253, 856
CviQI	GTAC	3 cut(s)	328, 367, 790
DdeI	CTNAG	5 cut(s)	363, 446, 628, 665, 841
DpnI	GATC	2 cut(s)	762, 895
DpnII	GATC	2 cut(s)	760, 893
DraIII	CACNNNGTG	1 cut(s)	811
DriI	GACNNNNNGTC	1 cut(s)	977
Eam1104I	CTCTTC	1 cut(s)	821
Eam1105I	GACNNNNNGTC	1 cut(s)	977
EarI	CTCTTC	1 cut(s)	821
EciI	GGCGGA	1 cut(s)	506
Eco32I	GATATC	1 cut(s)	609
Eco47I	GGWCC	3 cut(s)	86, 375, 412
Eco47III	AGCGCT	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	674
Eco88I	CYCGRG	2 cut(s)	236, 562
EcoRII	CCWGG	3 cut(s)	371, 486, 522
EcoRV	GATATC	1 cut(s)	609
FaeI	CATG	2 cut(s)	256, 859
FaiI	YATR	4 cut(s)	254, 426, 850, 857
FalI	AAGNNNNNCTT	4 cut(s)	726, 758, 969, 1001
FaqI	GGGAC	2 cut(s)	352, 443
FatI	CATG	2 cut(s)	252, 855
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	6 cut(s)	171, 174, 184, 266, 314, 545
Fsp4HI	GCNGC	6 cut(s)	171, 174, 184, 266, 314, 545
FspBI	CTAG	3 cut(s)	161, 500, 512
FspI	TGCGCA	2 cut(s)	50, 169
GlaI	GCGC	6 cut(s)	50, 169, 187, 285, 349, 543
GluI	GCNGC	6 cut(s)	171, 174, 184, 266, 314, 545
HaeII	RGCGCY	2 cut(s)	287, 545
HaeIII	GGCC	3 cut(s)	235, 528, 984
HapII	CCGG	5 cut(s)	89, 504, 532, 596, 614
HgaI	GACGC	2 cut(s)	177, 349
HhaI	GCGC	6 cut(s)	51, 170, 188, 286, 350, 544
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	2 cut(s)	256, 859
Hin6I	GCGC	6 cut(s)	49, 168, 186, 284, 348, 542
HinP1I	GCGC	6 cut(s)	49, 168, 186, 284, 348, 542
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	2 cut(s)	381, 417
HinfI	GANTC	7 cut(s)	8, 352, 508, 560, 704, 872, 993
HpaI	GTTAAC	1 cut(s)	751
HpaII	CCGG	5 cut(s)	89, 504, 532, 596, 614
HphI	GGTGA	3 cut(s)	229, 603, 823
Hpy166II	GTNNAC	3 cut(s)	220, 517, 751
Hpy188I	TCNGA	7 cut(s)	196, 379, 412, 581, 606, 758, 963
Hpy188III	TCNNGA	5 cut(s)	448, 697, 883, 929, 990
Hpy8I	GTNNAC	3 cut(s)	220, 517, 751
Hpy99I	CGWCG	2 cut(s)	193, 196
HpyAV	CCTTC	6 cut(s)	65, 292, 298, 529, 873, 1007
HpyCH4III	ACNGT	2 cut(s)	114, 434
HpyCH4IV	ACGT	1 cut(s)	835
HpyCH4V	TGCA	5 cut(s)	183, 470, 547, 740, 891
HpyF10VI	GCNNNNNNNGC	2 cut(s)	292, 488
HpyF3I	CTNAG	5 cut(s)	363, 446, 628, 665, 841
HpySE526I	ACGT	1 cut(s)	835
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	2 cut(s)	256, 859
HspAI	GCGC	6 cut(s)	49, 168, 186, 284, 348, 542
KspAI	GTTAAC	1 cut(s)	751
Kzo9I	GATC	2 cut(s)	760, 893
LmnI	GCTCC	5 cut(s)	262, 281, 473, 777, 802
Lsp1109I	GCAGC	6 cut(s)	182, 185, 195, 277, 300, 531
LweI	GCATC	2 cut(s)	727, 775
MaeI	CTAG	3 cut(s)	161, 500, 512
MaeII	ACGT	1 cut(s)	835
MaeIII	GTNAC	4 cut(s)	91, 397, 557, 836
MalI	GATC	2 cut(s)	762, 895
MboI	GATC	2 cut(s)	760, 893
MboII	GAAGA	5 cut(s)	110, 268, 838, 894, 992
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	3 cut(s)	569, 807, 863
MluCI	AATT	2 cut(s)	322, 660
MlyI	GAGTC	3 cut(s)	346, 554, 698
MmeI	TCCRAC	3 cut(s)	49, 174, 383
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	2 cut(s)	750, 878
MspI	CCGG	5 cut(s)	89, 504, 532, 596, 614
MspR9I	CCNGG	5 cut(s)	373, 488, 505, 524, 596
Mva1269I	GAATGC	2 cut(s)	107, 170
MvaI	CCWGG	3 cut(s)	373, 488, 524
MvnI	CGCG	2 cut(s)	188, 350
MwoI	GCNNNNNNNGC	2 cut(s)	292, 488
NciI	CCSGG	2 cut(s)	505, 596
NdeII	GATC	2 cut(s)	760, 893
NheI	GCTAGC	1 cut(s)	499
NlaIII	CATG	2 cut(s)	256, 859
NlaIV	GGNNCC	1 cut(s)	70
NmeAIII	GCCGAG	1 cut(s)	369
NmuCI	GTSAC	3 cut(s)	91, 397, 557
NsbI	TGCGCA	2 cut(s)	50, 169
PaeR7I	CTCGAG	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	1 cut(s)	347
PctI	GAATGC	2 cut(s)	107, 170
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	4 cut(s)	8, 508, 872, 993
PinAI	ACCGGT	1 cut(s)	88
PkrI	GCNGC	6 cut(s)	172, 175, 185, 267, 315, 546
PleI	GAGTC	3 cut(s)	346, 554, 698
PpsI	GAGTC	3 cut(s)	346, 554, 698
Psp1406I	AACGTT	1 cut(s)	835
Psp6I	CCWGG	3 cut(s)	371, 486, 522
PspGI	CCWGG	3 cut(s)	371, 486, 522
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	5 cut(s)	86, 234, 375, 412, 526
PspXI	VCTCGAGB	1 cut(s)	562
PstI	CTGCAG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	760
RsaI	GTAC	3 cut(s)	329, 368, 791
RsaNI	GTAC	3 cut(s)	328, 367, 790
SaqAI	TTAA	2 cut(s)	750, 878
SatI	GCNGC	6 cut(s)	171, 174, 184, 266, 314, 545
Sau3AI	GATC	2 cut(s)	760, 893
Sau96I	GGNCC	5 cut(s)	86, 234, 375, 412, 526
ScaI	AGTACT	1 cut(s)	368
SchI	GAGTC	3 cut(s)	346, 554, 698
ScrFI	CCNGG	5 cut(s)	373, 488, 505, 524, 596
SduI	GDGCHC	3 cut(s)	569, 807, 863
SfaNI	GCATC	2 cut(s)	727, 775
SfcI	CTRYAG	2 cut(s)	181, 910
Sfr274I	CTCGAG	1 cut(s)	562
SinI	GGWCC	3 cut(s)	86, 375, 412
SlaI	CTCGAG	1 cut(s)	562
SmlI	CTYRAG	1 cut(s)	562
SmoI	CTYRAG	1 cut(s)	562
Sse9I	AATT	2 cut(s)	322, 660
SsiI	CCGC	3 cut(s)	309, 491, 589
SspMI	CTAG	3 cut(s)	161, 500, 512
StyD4I	CCNGG	5 cut(s)	371, 486, 503, 522, 594
TaaI	ACNGT	2 cut(s)	114, 434
TaiI	ACGT	1 cut(s)	838
TaqI	TCGA	6 cut(s)	144, 291, 563, 928, 989, 1003
TasI	AATT	2 cut(s)	322, 660
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	4 cut(s)	8, 508, 872, 993
Tru1I	TTAA	2 cut(s)	750, 878
Tru9I	TTAA	2 cut(s)	750, 878
TscAI	CASTG	2 cut(s)	65, 646
TseFI	GTSAC	3 cut(s)	91, 397, 557
TseI	GCWGC	6 cut(s)	170, 173, 183, 265, 313, 544
Tsp45I	GTSAC	3 cut(s)	91, 397, 557
TspDTI	ATGAA	2 cut(s)	269, 844
TspGWI	ACGGA	3 cut(s)	93, 110, 275
TspRI	CASTG	2 cut(s)	65, 646
VpaK11BI	GGWCC	3 cut(s)	86, 375, 412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XhoI	CTCGAG	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	3 cut(s)	161, 500, 512
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.