Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010562

Physical Location & Seq

Genomic Coordinates Reverse (-)

65490527 .. 65492652

Gene Structure 2126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00386670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTTAATAGACTCAAACCCGCCTCTCCTACACCATTATGGAGCCCTTTTGCACCAGCCATCCGATAAAAATCCTCAACTACATGAAAACCATATCACAGAAGAATGCCAGCTCCCATTGATAGACCTTGAAGGGTTGAAGAGCCATGACGTGAGTTACAGGCTAGCATGCGCTAGTTCGATTTGTAGAGCCTCCTCAGAATGGGGCTTTTTCCAAGTGGTGAACCATGGCATAAGCTCTGAGCTTATAAAGAAGATGAGGAGAGAGCAAGTGAAGTTGTTTTCAGCACCCTTTGAGAAGAAACAAACTTCTGGACTTCTCAACAATTCTTATAGGTATGGGACTCCAACAGCAACTCACCCAACTCAGTTCTCTTGGTCTGAAGCTTTTCACATTCCTGTCTCAAAAATCTCAGACCAAACTTGCTATGGGGAGTTCACCTCTCTAAGGGAAGTGATGGAGGAATTTTCAACAGCCATGTCCAACCTATCAAAAGTGCTTGCTGGGGTACTAATTAATAATCTCGACAAACAAGAGGAAGCTGCAGGAAACATTTGTGAGTCGAGCTCATGCTTTCTTCGCTTGAATCGCTACCCGGCTTGTCCATTTTCCCCAGAGATGTTTGGTCTAGTGCCTCACACTGACAGTGATTTCCTCACCATTCTTTGCCAAGATCAAGTAGGAGGACTTCAACTCATGAAAGACTCCAAATGGGTTGCTGTAAAACCCAATCCGGACGCGCTTATCGTCAACATTGGAGATCTTTTTCAGGCATGGAGCAACGATGTGTATAAGAGTGTGGAACACAAGGTCATAGCCAACGAGAAAACGGAACGATATTCGATAGCATACTTTCTGTGCCCATCTTATGATTCTTTAATAGGGAGTTGCAGAGAATCCTCCATTTATAGAAAGTTCACATTTGGAGAATACAGGAGCCAAATTCAAGAAGATGTCAAGAAACTTGGCCATAAATCGGCAACCTACAGTGATTCAGCTGATGTTTCCACACCAGCGTATGATTTTGACTATCAGGTACAGTTGAAAAGATTAAATACCAAAGCAGCTACACTTGTTCCCATCTGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy B3 DIOX_N

Protein Analysis

363

Amino Acids

41.01

Weight (kDa)

5.86

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	38 - 139	1.9e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	191 - 288	5.3e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36510 FvH4_4g36510 FvH4_4g36510
malus_domestica	MD13G1008700.v1.1 MD16G1006700.v1.1
prunus_persica	Prupe.1G344000_v2.0.a1 Prupe.1G344000_v2.0.a1
pyrus_communis	pycom13g00730 pycom16g00640
rosa_chinensis	RchiOBHm_Chr4g0446271
rosa_laevigata	RLG00000005675
rosa_multiflora	Rmu_co8482297.1_g000001 Rmu_sc0002266.1_g000008
rosa_roxburghii	Rroxscaffold_5G00386670
rosa_rugosa	Rorug04G0369400 Rorug04G0369500
rosa_samantha	Rh4AG431200 Rh4BG440600 Rh4CG457900 Rh4DG439100
rosa_wichuraiana	Rw4G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AccII	CGCG	1 cut(s)	740
AccIII	TCCGGA	1 cut(s)	733
AciI	CCGC	1 cut(s)	20
AcoI	YGGCCR	1 cut(s)	967
AcsI	RAATTY	2 cut(s)	464, 942
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	2 cut(s)	510, 1038
AfiI	CCNNNNNNNGG	3 cut(s)	201, 447, 976
AgsI	TTSAA	7 cut(s)	131, 139, 471, 586, 692, 947, 1045
AjiI	CACGTC	1 cut(s)	151
AluBI	AGCT	8 cut(s)	112, 237, 244, 386, 542, 567, 998, 1067
AluI	AGCT	8 cut(s)	112, 237, 244, 386, 542, 567, 998, 1067
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	1 cut(s)	406
Aor13HI	TCCGGA	1 cut(s)	733
AoxI	GGCC	1 cut(s)	967
ApeKI	GCWGC	2 cut(s)	542, 1064
ApoI	RAATTY	2 cut(s)	464, 942
AseI	ATTAAT	1 cut(s)	516
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	2 cut(s)	173, 742
AsuC2I	CCSGG	1 cut(s)	596
AsuHPI	GGTGA	4 cut(s)	232, 350, 430, 649
AsuNHI	GCTAGC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	863
BalI	TGGCCA	1 cut(s)	969
BanII	GRGCYC	2 cut(s)	46, 569
BarI	GAAGNNNNNNTAC	2 cut(s)	672, 704
Bbv12I	GWGCWC	1 cut(s)	569
BbvI	GCAGC	2 cut(s)	529, 1076
BccI	CCATC	4 cut(s)	67, 451, 871, 1088
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	3 cut(s)	164, 174, 629
BfmI	CTRYAG	2 cut(s)	543, 985
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	2 cut(s)	543, 1065
BlsI	GCNGC	2 cut(s)	544, 1066
Bme1390I	CCNGG	1 cut(s)	596
BmgBI	CACGTC	1 cut(s)	151
BmiI	GGNNCC	2 cut(s)	43, 938
BmrFI	CCNGG	1 cut(s)	596
BmtI	GCTAGC	1 cut(s)	167
BplI	GAGNNNNNCTC	4 cut(s)	425, 457, 551, 583
BpuMI	CCSGG	1 cut(s)	596
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	226
BsaWI	WCCGGW	1 cut(s)	733
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 447, 976
Bse8I	GATNNNNATC	1 cut(s)	69
BseAI	TCCGGA	1 cut(s)	733
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	59
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	3 cut(s)	201, 447, 976
BseMII	CTCAG	4 cut(s)	210, 231, 380, 426
BseRI	GAGGAG	2 cut(s)	184, 274
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	2 cut(s)	529, 1076
BseYI	CCCAGC	1 cut(s)	503
Bsh1236I	CGCG	1 cut(s)	740
BshFI	GGCC	1 cut(s)	969
BsiHKAI	GWGCWC	1 cut(s)	569
BsiSI	CCGG	2 cut(s)	596, 734
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	3 cut(s)	201, 447, 976
BsmAI	GTCTC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	969
Bsp1286I	GDGCHC	3 cut(s)	46, 569, 863
Bsp13I	TCCGGA	1 cut(s)	733
Bsp143I	GATC	2 cut(s)	673, 760
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	969
BspCNI	CTCAG	4 cut(s)	209, 232, 379, 425
BspEI	TCCGGA	1 cut(s)	733
BspFNI	CGCG	1 cut(s)	740
BspHI	TCATGA	1 cut(s)	696
BspLI	GGNNCC	2 cut(s)	43, 938
BspMAI	CTGCAG	1 cut(s)	547
BspOI	GCTAGC	1 cut(s)	167
BspQI	GCTCTTC	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	2 cut(s)	673, 760
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	3 cut(s)	647, 989, 1041
Bst6I	CTCTTC	1 cut(s)	134
BstC8I	GCNNGC	4 cut(s)	110, 165, 169, 501
BstDEI	CTNAG	5 cut(s)	196, 240, 366, 412, 446
BstDSI	CCRYGG	1 cut(s)	226
BstENI	CCTNNNNNAGG	1 cut(s)	445
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	740
BstHHI	GCGC	2 cut(s)	173, 742
BstKTI	GATC	2 cut(s)	676, 763
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	2 cut(s)	673, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	579, 588
BstNSI	RCATGY	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	2 cut(s)	543, 985
BstSLI	GKGCMC	1 cut(s)	863
BstUI	CGCG	1 cut(s)	740
BstV1I	GCAGC	2 cut(s)	529, 1076
BstX2I	RGATCY	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	760
BsuRI	GGCC	1 cut(s)	969
BtgI	CCRYGG	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	3 cut(s)	639, 652, 994
Cac8I	GCNNGC	4 cut(s)	110, 165, 169, 501
CciI	TCATGA	1 cut(s)	696
CfoI	GCGC	2 cut(s)	173, 742
CseI	GACGC	1 cut(s)	746
Csp6I	GTAC	2 cut(s)	509, 1037
CviAII	CATG	8 cut(s)	83, 146, 168, 227, 478, 570, 697, 774
CviQI	GTAC	2 cut(s)	509, 1037
DdeI	CTNAG	5 cut(s)	196, 240, 366, 412, 446
DpnI	GATC	2 cut(s)	675, 762
DpnII	GATC	2 cut(s)	673, 760
EaeI	YGGCCR	1 cut(s)	967
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Ecl136II	GAGCTC	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	46, 569
Eco53kI	GAGCTC	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	402
EcoICRI	GAGCTC	1 cut(s)	567
EcoNI	CCTNNNNNAGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	2 cut(s)	46, 569
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	8 cut(s)	86, 149, 171, 230, 481, 573, 700, 777
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	8 cut(s)	82, 145, 167, 226, 477, 569, 696, 773
FauI	CCCGC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	543, 1065
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	2 cut(s)	46, 569
Fsp4HI	GCNGC	2 cut(s)	543, 1065
FspBI	CTAG	3 cut(s)	164, 174, 629
GlaI	GCGC	2 cut(s)	172, 741
GluI	GCNGC	2 cut(s)	543, 1065
GsaI	CCCAGC	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	969
HapII	CCGG	2 cut(s)	596, 734
HgaI	GACGC	1 cut(s)	746
HhaI	GCGC	2 cut(s)	173, 742
Hin1II	CATG	8 cut(s)	86, 149, 171, 230, 481, 573, 700, 777
Hin6I	GCGC	2 cut(s)	171, 740
HinP1I	GCGC	2 cut(s)	171, 740
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	8 cut(s)	11, 343, 560, 586, 704, 872, 896, 992
HpaII	CCGG	2 cut(s)	596, 734
HphI	GGTGA	4 cut(s)	232, 350, 430, 649
Hpy166II	GTNNAC	4 cut(s)	223, 438, 751, 918
Hpy188I	TCNGA	5 cut(s)	64, 199, 241, 382, 415
Hpy188III	TCNNGA	6 cut(s)	312, 524, 697, 734, 947, 958
Hpy8I	GTNNAC	4 cut(s)	223, 438, 751, 918
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	3 cut(s)	647, 989, 1041
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	52, 545, 891
HpyF10VI	GCNNNNNNNGC	2 cut(s)	579, 588
HpyF3I	CTNAG	5 cut(s)	196, 240, 366, 412, 446
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	8 cut(s)	86, 149, 171, 230, 481, 573, 700, 777
HspAI	GCGC	2 cut(s)	171, 740
Kpn2I	TCCGGA	1 cut(s)	733
Kzo9I	GATC	2 cut(s)	673, 760
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	4 cut(s)	41, 117, 777, 936
Lsp1109I	GCAGC	2 cut(s)	529, 1076
MaeI	CTAG	3 cut(s)	164, 174, 629
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	675, 762
MboI	GATC	2 cut(s)	673, 760
MboII	GAAGA	6 cut(s)	113, 151, 265, 310, 569, 962
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	3 cut(s)	46, 569, 863
MlsI	TGGCCA	1 cut(s)	969
MluCI	AATT	4 cut(s)	325, 464, 513, 942
MluNI	TGGCCA	1 cut(s)	969
MlyI	GAGTC	4 cut(s)	5, 337, 569, 698
MmeI	TCCRAC	2 cut(s)	371, 507
Mox20I	TGGCCA	1 cut(s)	969
MroI	TCCGGA	1 cut(s)	733
MroXI	GAANNNNTTC	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	969
MseI	TTAA	4 cut(s)	5, 516, 878, 1052
MslI	CAYNNNNRTG	1 cut(s)	36
Msp20I	TGGCCA	1 cut(s)	969
MspA1I	CMGCKG	1 cut(s)	998
MspI	CCGG	2 cut(s)	596, 734
MspR9I	CCNGG	1 cut(s)	596
Mva1269I	GAATGC	1 cut(s)	110
MvnI	CGCG	1 cut(s)	740
MwoI	GCNNNNNNNGC	2 cut(s)	579, 588
NciI	CCSGG	1 cut(s)	596
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	2 cut(s)	673, 760
NheI	GCTAGC	1 cut(s)	163
NlaIII	CATG	8 cut(s)	86, 149, 171, 230, 481, 573, 700, 777
NlaIV	GGNNCC	2 cut(s)	43, 938
NspI	RCATGY	1 cut(s)	171
PaeI	GCATGC	1 cut(s)	171
PagI	TCATGA	1 cut(s)	696
PciSI	GCTCTTC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PctI	GAATGC	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	4 cut(s)	586, 872, 896, 992
PkrI	GCNGC	2 cut(s)	544, 1066
PleI	GAGTC	4 cut(s)	5, 337, 568, 698
PpsI	GAGTC	4 cut(s)	5, 337, 568, 698
PshBI	ATTAAT	1 cut(s)	516
PsiI	TTATAA	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	569
PspFI	CCCAGC	1 cut(s)	503
PspN4I	GGNNCC	2 cut(s)	43, 938
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	760
PvuII	CAGCTG	1 cut(s)	998
RsaI	GTAC	2 cut(s)	510, 1038
RsaNI	GTAC	2 cut(s)	509, 1037
RseI	CAYNNNNRTG	1 cut(s)	36
SacI	GAGCTC	1 cut(s)	569
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	4 cut(s)	5, 516, 878, 1052
SatI	GCNGC	2 cut(s)	543, 1065
Sau3AI	GATC	2 cut(s)	673, 760
SchI	GAGTC	4 cut(s)	5, 337, 569, 698
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	3 cut(s)	46, 569, 863
SfcI	CTRYAG	2 cut(s)	543, 985
SmiMI	CAYNNNNRTG	1 cut(s)	36
SphI	GCATGC	1 cut(s)	171
Sse9I	AATT	4 cut(s)	325, 464, 513, 942
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	3 cut(s)	164, 174, 629
SstI	GAGCTC	1 cut(s)	569
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	3 cut(s)	647, 989, 1041
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	4 cut(s)	179, 525, 563, 842
TasI	AATT	4 cut(s)	325, 464, 513, 942
TfiI	GAWTC	4 cut(s)	586, 872, 896, 992
Tru1I	TTAA	4 cut(s)	5, 516, 878, 1052
Tru9I	TTAA	4 cut(s)	5, 516, 878, 1052
TscAI	CASTG	3 cut(s)	646, 652, 994
TseI	GCWGC	2 cut(s)	542, 1064
TspDTI	ATGAA	2 cut(s)	99, 713
TspGWI	ACGGA	1 cut(s)	845
TspRI	CASTG	3 cut(s)	646, 652, 994
VspI	ATTAAT	1 cut(s)	516
XagI	CCTNNNNNAGG	1 cut(s)	445
XapI	RAATTY	2 cut(s)	464, 942
XceI	RCATGY	1 cut(s)	171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	3 cut(s)	164, 174, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.