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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G19895 |
| fragaria_vesca | FvH4_4g36670 FvH4_4g36670 FvH4_4g36670 FvH4_4g36670 |
| malus_domestica | MD13G1008400.v1.1 MD16G1005900.v1.1 |
| prunus_persica | Prupe.1G344700_v2.0.a1 |
| pyrus_communis | pycom13g00690 pycom16g00570 |
| rosa_chinensis | RchiOBHm_Chr4g0446381 |
| rosa_laevigata | RLG00000005667 |
| rosa_multiflora | Rmu_sc0008360.1_g000002 Rmu_sc0010778.1_g000003 Rmu_sc0010778.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00386820 |
| rosa_rugosa | Rorug04G0370800 Rorug04G0370800 Rorug04G0370900 |
| rosa_samantha | Rh4AG432400 Rh4BG441600 Rh4CG458900 Rh4DG440300 |
| rosa_wichuraiana | Rw4G036930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 539 |
| Acc65I | GGTACC | 1 cut(s) | 762 |
| AccB1I | GGYRCC | 2 cut(s) | 383, 762 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1024 |
| AccI | GTMKAC | 2 cut(s) | 512, 733 |
| AccII | CGCG | 3 cut(s) | 32, 320, 499 |
| AccIII | TCCGGA | 1 cut(s) | 363 |
| AclWI | GGATC | 4 cut(s) | 206, 801, 1379, 1392 |
| AcoI | YGGCCR | 1 cut(s) | 178 |
| AcsI | RAATTY | 1 cut(s) | 1511 |
| AcyI | GRCGYC | 1 cut(s) | 384 |
| AfaI | GTAC | 7 cut(s) | 6, 218, 416, 764, 1002, 1234, 1562 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 195, 221, 1024, 1142 |
| AflII | CTTAAG | 1 cut(s) | 1568 |
| AflIII | ACRYGT | 1 cut(s) | 411 |
| AgsI | TTSAA | 2 cut(s) | 1157, 1220 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 778 |
| AjnI | CCWGG | 3 cut(s) | 727, 765, 787 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1500, 1532 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1578, 1610 |
| Alw21I | GWGCWC | 2 cut(s) | 229, 376 |
| Alw26I | GTCTC | 2 cut(s) | 1202, 1250 |
| AlwI | GGATC | 4 cut(s) | 206, 801, 1379, 1392 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 788, 974, 1549 |
| Ama87I | CYCGRG | 1 cut(s) | 189 |
| Aor13HI | TCCGGA | 1 cut(s) | 363 |
| AoxI | GGCC | 4 cut(s) | 178, 186, 420, 838 |
| ApoI | RAATTY | 1 cut(s) | 1511 |
| Asp718I | GGTACC | 1 cut(s) | 762 |
| AspLEI | GCGC | 6 cut(s) | 262, 325, 333, 386, 499, 540 |
| AspS9I | GGNCC | 2 cut(s) | 187, 420 |
| AsuC2I | CCSGG | 4 cut(s) | 190, 191, 235, 672 |
| AsuHPI | GGTGA | 3 cut(s) | 78, 1385, 1436 |
| AvaI | CYCGRG | 1 cut(s) | 189 |
| AxyI | CCTNAGG | 1 cut(s) | 1616 |
| BamHI | GGATCC | 1 cut(s) | 1384 |
| BanI | GGYRCC | 2 cut(s) | 383, 762 |
| BanII | GRGCYC | 2 cut(s) | 229, 376 |
| BbsI | GAAGAC | 1 cut(s) | 1402 |
| Bbv12I | GWGCWC | 2 cut(s) | 229, 376 |
| BbvCI | CCTCAGC | 1 cut(s) | 1041 |
| BccI | CCATC | 3 cut(s) | 1396, 1412, 1424 |
| BceAI | ACGGC | 3 cut(s) | 278, 384, 442 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 15, 49, 1019, 1053 |
| BciT130I | CCWGG | 3 cut(s) | 729, 767, 789 |
| BciVI | GTATCC | 2 cut(s) | 1183, 1464 |
| BclI | TGATCA | 1 cut(s) | 9 |
| BcnI | CCSGG | 4 cut(s) | 190, 191, 235, 672 |
| BcoDI | GTCTC | 2 cut(s) | 1202, 1250 |
| BfmI | CTRYAG | 2 cut(s) | 1293, 1299 |
| BfoI | RGCGCY | 3 cut(s) | 263, 326, 387 |
| BfrI | CTTAAG | 1 cut(s) | 1568 |
| BfuI | GTATCC | 2 cut(s) | 1183, 1464 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 428 |
| BglII | AGATCT | 1 cut(s) | 1262 |
| BlpI | GCTNAGC | 1 cut(s) | 375 |
| Bme1390I | CCNGG | 7 cut(s) | 190, 191, 235, 672, 729, 767, 789 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 778 |
| BmeT110I | CYCGRG | 1 cut(s) | 189 |
| BmgT120I | GGNCC | 2 cut(s) | 187, 420 |
| BmiI | GGNNCC | 6 cut(s) | 310, 385, 764, 1386, 1493, 1582 |
| BmrFI | CCNGG | 7 cut(s) | 190, 191, 235, 672, 729, 767, 789 |
| BmrI | ACTGGG | 2 cut(s) | 314, 1537 |
| BmsI | GCATC | 4 cut(s) | 535, 1096, 1118, 1150 |
| BmuI | ACTGGG | 2 cut(s) | 314, 1537 |
| BpiI | GAAGAC | 1 cut(s) | 1402 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 358, 390, 363, 395, 581, 613 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1041 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 375 |
| BpuMI | CCSGG | 4 cut(s) | 190, 191, 235, 672 |
| BsaBI | GATNNNNATC | 1 cut(s) | 14 |
| BsaHI | GRCGYC | 1 cut(s) | 384 |
| BsaI | GGTCTC | 2 cut(s) | 1202, 1250 |
| BsaJI | CCNNGG | 4 cut(s) | 189, 400, 717, 788 |
| BsaWI | WCCGGW | 2 cut(s) | 363, 1583 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1578, 1608 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 195, 221, 1024, 1142 |
| Bse118I | RCCGGY | 2 cut(s) | 386, 580 |
| Bse1I | ACTGG | 3 cut(s) | 309, 1018, 1543 |
| Bse21I | CCTNAGG | 1 cut(s) | 1616 |
| Bse3DI | GCAATG | 3 cut(s) | 575, 963, 1249 |
| Bse8I | GATNNNNATC | 1 cut(s) | 14 |
| BseAI | TCCGGA | 1 cut(s) | 363 |
| BseBI | CCWGG | 3 cut(s) | 729, 767, 789 |
| BseDI | CCNNGG | 4 cut(s) | 189, 400, 717, 788 |
| BseGI | GGATG | 3 cut(s) | 1111, 1324, 1538 |
| BseJI | GATNNNNATC | 1 cut(s) | 14 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 195, 221, 1024, 1142 |
| BseMI | GCAATG | 3 cut(s) | 575, 963, 1249 |
| BseMII | CTCAG | 5 cut(s) | 128, 389, 835, 1032, 1607 |
| BseNI | ACTGG | 3 cut(s) | 309, 1018, 1543 |
| BseRI | GAGGAG | 4 cut(s) | 10, 46, 49, 163 |
| BsgI | GTGCAG | 2 cut(s) | 9, 1469 |
| Bsh1236I | CGCG | 3 cut(s) | 32, 320, 499 |
| Bsh1285I | CGRYCG | 2 cut(s) | 165, 234 |
| BshFI | GGCC | 4 cut(s) | 180, 188, 422, 840 |
| BshNI | GGYRCC | 2 cut(s) | 383, 762 |
| BsiEI | CGRYCG | 2 cut(s) | 165, 234 |
| BsiHKAI | GWGCWC | 2 cut(s) | 229, 376 |
| BsiHKCI | CYCGRG | 1 cut(s) | 189 |
| BsiSI | CCGG | 9 cut(s) | 177, 190, 234, 364, 387, 423, 581, 671, 1584 |
| BsiWI | CGTACG | 1 cut(s) | 216 |
| BslFI | GGGAC | 2 cut(s) | 250, 458 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 195, 221, 1024, 1142 |
| BsmAI | GTCTC | 2 cut(s) | 1202, 1250 |
| BsmFI | GGGAC | 2 cut(s) | 250, 458 |
| BsmI | GAATGC | 2 cut(s) | 1148, 1183 |
| BsnI | GGCC | 4 cut(s) | 180, 188, 422, 840 |
| Bso31I | GGTCTC | 2 cut(s) | 1202, 1250 |
| BsoBI | CYCGRG | 1 cut(s) | 189 |
| Bsp1286I | GDGCHC | 2 cut(s) | 229, 376 |
| Bsp13I | TCCGGA | 1 cut(s) | 363 |
| Bsp1407I | TGTACA | 1 cut(s) | 414 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 375 |
| BspANI | GGCC | 4 cut(s) | 180, 188, 422, 840 |
| BspCNI | CTCAG | 5 cut(s) | 127, 388, 834, 1033, 1608 |
| BspEI | TCCGGA | 1 cut(s) | 363 |
| BspFNI | CGCG | 3 cut(s) | 32, 320, 499 |
| BspHI | TCATGA | 1 cut(s) | 12 |
| BspLI | GGNNCC | 6 cut(s) | 310, 385, 764, 1386, 1493, 1582 |
| BspMAI | CTGCAG | 2 cut(s) | 1297, 1303 |
| BspPI | GGATC | 4 cut(s) | 206, 801, 1379, 1392 |
| BspT107I | GGYRCC | 2 cut(s) | 383, 762 |
| BspTI | CTTAAG | 1 cut(s) | 1568 |
| BspTNI | GGTCTC | 2 cut(s) | 1202, 1250 |
| BsrDI | GCAATG | 3 cut(s) | 575, 963, 1249 |
| BsrFI | RCCGGY | 2 cut(s) | 386, 580 |
| BsrGI | TGTACA | 1 cut(s) | 414 |
| BsrI | ACTGG | 3 cut(s) | 309, 1018, 1543 |
| BssAI | RCCGGY | 2 cut(s) | 386, 580 |
| BssECI | CCNNGG | 4 cut(s) | 189, 400, 717, 788 |
| BssNAI | GTATAC | 1 cut(s) | 734 |
| BssNI | GRCGYC | 1 cut(s) | 384 |
| Bst1107I | GTATAC | 1 cut(s) | 734 |
| Bst2UI | CCWGG | 3 cut(s) | 729, 767, 789 |
| Bst4CI | ACNGT | 3 cut(s) | 725, 776, 1610 |
| Bst6I | CTCTTC | 1 cut(s) | 1204 |
| BstACI | GRCGYC | 1 cut(s) | 384 |
| BstAFI | CTTAAG | 1 cut(s) | 1568 |
| BstAUI | TGTACA | 1 cut(s) | 414 |
| BstC8I | GCNNGC | 7 cut(s) | 182, 186, 264, 388, 582, 838, 1181 |
| BstDEI | CTNAG | 6 cut(s) | 114, 375, 821, 1041, 1286, 1616 |
| BstDSI | CCRYGG | 1 cut(s) | 400 |
| BstEII | GGTNACC | 1 cut(s) | 1373 |
| BstF5I | GGATG | 3 cut(s) | 1111, 1324, 1538 |
| BstFNI | CGCG | 3 cut(s) | 32, 320, 499 |
| BstH2I | RGCGCY | 3 cut(s) | 263, 326, 387 |
| BstHHI | GCGC | 6 cut(s) | 262, 325, 333, 386, 499, 540 |
| BstMAI | GTCTC | 2 cut(s) | 1202, 1250 |
| BstMCI | CGRYCG | 2 cut(s) | 165, 234 |
| BstNI | CCWGG | 3 cut(s) | 729, 767, 789 |
| BstNSI | RCATGY | 1 cut(s) | 415 |
| BstPI | GGTNACC | 1 cut(s) | 1373 |
| BstSCI | CCNGG | 7 cut(s) | 188, 189, 233, 670, 727, 765, 787 |
| BstSFI | CTRYAG | 2 cut(s) | 1293, 1299 |
| BstUI | CGCG | 3 cut(s) | 32, 320, 499 |
| BstV2I | GAAGAC | 1 cut(s) | 1402 |
| BstX2I | RGATCY | 4 cut(s) | 198, 793, 1262, 1384 |
| BstYI | RGATCY | 4 cut(s) | 198, 793, 1262, 1384 |
| BstZ17I | GTATAC | 1 cut(s) | 734 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1616 |
| BsuI | GTATCC | 2 cut(s) | 1183, 1464 |
| BsuRI | GGCC | 4 cut(s) | 180, 188, 422, 840 |
| BtgI | CCRYGG | 1 cut(s) | 400 |
| BtgZI | GCGATG | 1 cut(s) | 558 |
| BtsCI | GGATG | 3 cut(s) | 1111, 1324, 1538 |
| BtsI | GCAGTG | 1 cut(s) | 1311 |
| BtsIMutI | CAGTG | 4 cut(s) | 781, 1311, 1470, 1550 |
| Cac8I | GCNNGC | 7 cut(s) | 182, 186, 264, 388, 582, 838, 1181 |
| CaiI | CAGNNNCTG | 3 cut(s) | 788, 974, 1549 |
| CciI | TCATGA | 1 cut(s) | 12 |
| CfoI | GCGC | 6 cut(s) | 262, 325, 333, 386, 499, 540 |
| Cfr10I | RCCGGY | 2 cut(s) | 386, 580 |
| Cfr13I | GGNCC | 2 cut(s) | 187, 420 |
| Cfr9I | CCCGGG | 1 cut(s) | 189 |
| CseI | GACGC | 3 cut(s) | 21, 326, 1346 |
| Csp6I | GTAC | 7 cut(s) | 5, 217, 415, 763, 1001, 1233, 1561 |
| CviAII | CATG | 9 cut(s) | 13, 412, 463, 484, 827, 928, 980, 1201, 1313 |
| CviQI | GTAC | 7 cut(s) | 5, 217, 415, 763, 1001, 1233, 1561 |
| DdeI | CTNAG | 6 cut(s) | 114, 375, 821, 1041, 1286, 1616 |
| DinI | GGCGCC | 1 cut(s) | 385 |
| DraI | TTTAAA | 1 cut(s) | 1098 |
| DriI | GACNNNNNGTC | 1 cut(s) | 778 |
| EaeI | YGGCCR | 1 cut(s) | 178 |
| Eam1104I | CTCTTC | 1 cut(s) | 1204 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 778 |
| EarI | CTCTTC | 1 cut(s) | 1204 |
| Ecl136II | GAGCTC | 2 cut(s) | 227, 374 |
| Eco24I | GRGCYC | 2 cut(s) | 229, 376 |
| Eco31I | GGTCTC | 2 cut(s) | 1202, 1250 |
| Eco32I | GATATC | 1 cut(s) | 1008 |
| Eco53kI | GAGCTC | 2 cut(s) | 227, 374 |
| Eco81I | CCTNAGG | 1 cut(s) | 1616 |
| Eco88I | CYCGRG | 1 cut(s) | 189 |
| Eco91I | GGTNACC | 1 cut(s) | 1373 |
| EcoICRI | GAGCTC | 2 cut(s) | 227, 374 |
| EcoO65I | GGTNACC | 1 cut(s) | 1373 |
| EcoRII | CCWGG | 3 cut(s) | 727, 765, 787 |
| EcoRV | GATATC | 1 cut(s) | 1008 |
| EcoT22I | ATGCAT | 1 cut(s) | 1111 |
| EcoT38I | GRGCYC | 2 cut(s) | 229, 376 |
| EgeI | GGCGCC | 1 cut(s) | 385 |
| EheI | GGCGCC | 1 cut(s) | 385 |
| FaeI | CATG | 9 cut(s) | 16, 415, 466, 487, 830, 931, 983, 1204, 1316 |
| FaqI | GGGAC | 2 cut(s) | 250, 458 |
| FatI | CATG | 9 cut(s) | 12, 411, 462, 483, 826, 927, 979, 1200, 1312 |
| FauI | CCCGC | 6 cut(s) | 37, 82, 129, 143, 259, 1172 |
| FbaI | TGATCA | 1 cut(s) | 9 |
| FblI | GTMKAC | 2 cut(s) | 512, 733 |
| FokI | GGATG | 3 cut(s) | 1118, 1331, 1525 |
| FriOI | GRGCYC | 2 cut(s) | 229, 376 |
| FspI | TGCGCA | 1 cut(s) | 539 |
| GlaI | GCGC | 6 cut(s) | 261, 324, 332, 385, 498, 539 |
| HaeII | RGCGCY | 3 cut(s) | 263, 326, 387 |
| HaeIII | GGCC | 4 cut(s) | 180, 188, 422, 840 |
| HapII | CCGG | 9 cut(s) | 177, 190, 234, 364, 387, 423, 581, 671, 1584 |
| HgaI | GACGC | 3 cut(s) | 21, 326, 1346 |
| HhaI | GCGC | 6 cut(s) | 262, 325, 333, 386, 499, 540 |
| Hin1I | GRCGYC | 1 cut(s) | 384 |
| Hin1II | CATG | 9 cut(s) | 16, 415, 466, 487, 830, 931, 983, 1204, 1316 |
| Hin6I | GCGC | 6 cut(s) | 260, 323, 331, 384, 497, 538 |
| HinP1I | GCGC | 6 cut(s) | 260, 323, 331, 384, 497, 538 |
| HincII | GTYRAC | 1 cut(s) | 705 |
| HindII | GTYRAC | 1 cut(s) | 705 |
| HindIII | AAGCTT | 1 cut(s) | 345 |
| HinfI | GANTC | 5 cut(s) | 170, 446, 1212, 1220, 1501 |
| HpaII | CCGG | 9 cut(s) | 177, 190, 234, 364, 387, 423, 581, 671, 1584 |
| HphI | GGTGA | 3 cut(s) | 78, 1385, 1436 |
| Hpy166II | GTNNAC | 4 cut(s) | 409, 513, 705, 734 |
| Hpy188I | TCNGA | 8 cut(s) | 198, 205, 231, 721, 1069, 1132, 1362, 1551 |
| Hpy188III | TCNNGA | 7 cut(s) | 13, 351, 364, 872, 1227, 1392, 1505 |
| Hpy8I | GTNNAC | 4 cut(s) | 409, 513, 705, 734 |
| Hpy99I | CGWCG | 6 cut(s) | 37, 224, 317, 320, 454, 1362 |
| HpyAV | CCTTC | 7 cut(s) | 420, 484, 640, 688, 851, 1320, 1491 |
| HpyCH4III | ACNGT | 3 cut(s) | 725, 776, 1610 |
| HpyCH4IV | ACGT | 1 cut(s) | 239 |
| HpyF3I | CTNAG | 6 cut(s) | 114, 375, 821, 1041, 1286, 1616 |
| HpySE526I | ACGT | 1 cut(s) | 239 |
| Hsp92I | GRCGYC | 1 cut(s) | 384 |
| Hsp92II | CATG | 9 cut(s) | 16, 415, 466, 487, 830, 931, 983, 1204, 1316 |
| HspAI | GCGC | 6 cut(s) | 260, 323, 331, 384, 497, 538 |
| KasI | GGCGCC | 1 cut(s) | 383 |
| Kpn2I | TCCGGA | 1 cut(s) | 363 |
| KpnI | GGTACC | 1 cut(s) | 766 |
| KroI | GCCGGC | 2 cut(s) | 386, 580 |
| KroNI | GCCGGC | 2 cut(s) | 388, 582 |
| Ksp22I | TGATCA | 1 cut(s) | 9 |
| LmnI | GCTCC | 7 cut(s) | 123, 224, 232, 308, 366, 790, 874 |
| LweI | GCATC | 4 cut(s) | 535, 1096, 1118, 1150 |
| MaeII | ACGT | 1 cut(s) | 239 |
| MaeIII | GTNAC | 2 cut(s) | 743, 1373 |
| MboII | GAAGA | 6 cut(s) | 449, 521, 1058, 1169, 1221, 1407 |
| MfeI | CAATTG | 1 cut(s) | 1077 |
| MflI | RGATCY | 4 cut(s) | 198, 793, 1262, 1384 |
| MhlI | GDGCHC | 2 cut(s) | 229, 376 |
| MluCI | AATT | 4 cut(s) | 1077, 1093, 1251, 1511 |
| Mly113I | GGCGCC | 1 cut(s) | 384 |
| MlyI | GAGTC | 4 cut(s) | 164, 440, 1221, 1495 |
| MmeI | TCCRAC | 2 cut(s) | 254, 1340 |
| Mph1103I | ATGCAT | 1 cut(s) | 1111 |
| MroI | TCCGGA | 1 cut(s) | 363 |
| MroNI | GCCGGC | 2 cut(s) | 386, 580 |
| MseI | TTAA | 6 cut(s) | 891, 1097, 1115, 1437, 1485, 1569 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1228, 1317, 1543 |
| MspA1I | CMGCKG | 3 cut(s) | 184, 974, 1298 |
| MspCI | CTTAAG | 1 cut(s) | 1568 |
| MspI | CCGG | 9 cut(s) | 177, 190, 234, 364, 387, 423, 581, 671, 1584 |
| MspR9I | CCNGG | 7 cut(s) | 190, 191, 235, 672, 729, 767, 789 |
| MunI | CAATTG | 1 cut(s) | 1077 |
| Mva1269I | GAATGC | 2 cut(s) | 1148, 1183 |
| MvaI | CCWGG | 3 cut(s) | 729, 767, 789 |
| MvnI | CGCG | 3 cut(s) | 32, 320, 499 |
| NaeI | GCCGGC | 2 cut(s) | 388, 582 |
| NarI | GGCGCC | 1 cut(s) | 384 |
| NciI | CCSGG | 4 cut(s) | 190, 191, 235, 672 |
| NgoMIV | GCCGGC | 2 cut(s) | 386, 580 |
| NlaIII | CATG | 9 cut(s) | 16, 415, 466, 487, 830, 931, 983, 1204, 1316 |
| NlaIV | GGNNCC | 6 cut(s) | 310, 385, 764, 1386, 1493, 1582 |
| NmeAIII | GCCGAG | 1 cut(s) | 360 |
| NmuCI | GTSAC | 2 cut(s) | 743, 1373 |
| NsbI | TGCGCA | 1 cut(s) | 539 |
| NsiI | ATGCAT | 1 cut(s) | 1111 |
| NspI | RCATGY | 1 cut(s) | 415 |
| PagI | TCATGA | 1 cut(s) | 12 |
| PciI | ACATGT | 1 cut(s) | 411 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 455 |
| PctI | GAATGC | 2 cut(s) | 1148, 1183 |
| PdiI | GCCGGC | 2 cut(s) | 388, 582 |
| PfeI | GAWTC | 1 cut(s) | 1220 |
| Pfl23II | CGTACG | 1 cut(s) | 216 |
| PflFI | GACNNNGTC | 1 cut(s) | 152 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1024 |
| Ple19I | CGATCG | 1 cut(s) | 165 |
| PleI | GAGTC | 4 cut(s) | 164, 440, 1220, 1495 |
| PluTI | GGCGCC | 1 cut(s) | 387 |
| PpsI | GAGTC | 4 cut(s) | 164, 440, 1220, 1495 |
| PscI | ACATGT | 1 cut(s) | 411 |
| Psp124BI | GAGCTC | 2 cut(s) | 229, 376 |
| Psp6I | CCWGG | 3 cut(s) | 727, 765, 787 |
| PspEI | GGTNACC | 1 cut(s) | 1373 |
| PspGI | CCWGG | 3 cut(s) | 727, 765, 787 |
| PspLI | CGTACG | 1 cut(s) | 216 |
| PspN4I | GGNNCC | 6 cut(s) | 310, 385, 764, 1386, 1493, 1582 |
| PspPI | GGNCC | 2 cut(s) | 187, 420 |
| PstI | CTGCAG | 2 cut(s) | 1297, 1303 |
| PstNI | CAGNNNCTG | 3 cut(s) | 788, 974, 1549 |
| PsuI | RGATCY | 4 cut(s) | 198, 793, 1262, 1384 |
| PsyI | GACNNNGTC | 1 cut(s) | 152 |
| PvuI | CGATCG | 1 cut(s) | 165 |
| PvuII | CAGCTG | 3 cut(s) | 184, 974, 1298 |
| RsaI | GTAC | 7 cut(s) | 6, 218, 416, 764, 1002, 1234, 1562 |
| RsaNI | GTAC | 7 cut(s) | 5, 217, 415, 763, 1001, 1233, 1561 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1228, 1317, 1543 |
| SacI | GAGCTC | 2 cut(s) | 229, 376 |
| SaqAI | TTAA | 6 cut(s) | 891, 1097, 1115, 1437, 1485, 1569 |
| Sau96I | GGNCC | 2 cut(s) | 187, 420 |
| SchI | GAGTC | 4 cut(s) | 164, 440, 1221, 1495 |
| ScrFI | CCNGG | 7 cut(s) | 190, 191, 235, 672, 729, 767, 789 |
| SduI | GDGCHC | 2 cut(s) | 229, 376 |
| SfaNI | GCATC | 4 cut(s) | 535, 1096, 1118, 1150 |
| SfcI | CTRYAG | 2 cut(s) | 1293, 1299 |
| SfoI | GGCGCC | 1 cut(s) | 385 |
| SmaI | CCCGGG | 1 cut(s) | 191 |
| SmiI | ATTTAAAT | 1 cut(s) | 1098 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1228, 1317, 1543 |
| SmlI | CTYRAG | 1 cut(s) | 1568 |
| SmoI | CTYRAG | 1 cut(s) | 1568 |
| Sse9I | AATT | 4 cut(s) | 1077, 1093, 1251, 1511 |
| SspDI | GGCGCC | 1 cut(s) | 383 |
| SstI | GAGCTC | 2 cut(s) | 229, 376 |
| StyD4I | CCNGG | 7 cut(s) | 188, 189, 233, 670, 727, 765, 787 |
| SwaI | ATTTAAAT | 1 cut(s) | 1098 |
| TaaI | ACNGT | 3 cut(s) | 725, 776, 1610 |
| TaiI | ACGT | 1 cut(s) | 242 |
| TaqI | TCGA | 2 cut(s) | 300, 1324 |
| TasI | AATT | 4 cut(s) | 1077, 1093, 1251, 1511 |
| TatI | WGTACW | 1 cut(s) | 414 |
| TfiI | GAWTC | 1 cut(s) | 1220 |
| Tru1I | TTAA | 6 cut(s) | 891, 1097, 1115, 1437, 1485, 1569 |
| Tru9I | TTAA | 6 cut(s) | 891, 1097, 1115, 1437, 1485, 1569 |
| TscAI | CASTG | 4 cut(s) | 781, 1311, 1470, 1550 |
| TseFI | GTSAC | 2 cut(s) | 743, 1373 |
| Tsp45I | GTSAC | 2 cut(s) | 743, 1373 |
| TspDTI | ATGAA | 4 cut(s) | 692, 843, 1176, 1485 |
| TspGWI | ACGGA | 1 cut(s) | 237 |
| TspMI | CCCGGG | 1 cut(s) | 189 |
| TspRI | CASTG | 4 cut(s) | 781, 1311, 1470, 1550 |
| Tth111I | GACNNNGTC | 1 cut(s) | 152 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1024 |
| Vha464I | CTTAAG | 1 cut(s) | 1568 |
| XapI | RAATTY | 1 cut(s) | 1511 |
| XceI | RCATGY | 1 cut(s) | 415 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 833, 1550 |
| XmaI | CCCGGG | 1 cut(s) | 189 |
| XmiI | GTMKAC | 2 cut(s) | 512, 733 |
| Zsp2I | ATGCAT | 1 cut(s) | 1111 |