Rmu_sc0010778.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010778.1
OG0008096
Physical Location & Seq
Forward (+)
14770 .. 16378
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010778.1_g000003.1.cds

Sequence Viewer

Length: 1119 bp
atgatctcctctgcacccacgtcgcacccaatcactccctccccctcctccaccaccaccgccgtcgccgccattagatcatctacggccaccaccaccaccacccccgcacactctcagctcccgtcgcctctctcccgcctcccccttccgccgacgctcgaccatgtgctgccgatccctgacgccgccccgtgccagctggcccgggttcggatctcggatatttccccctacgacggagccccgaccgggccgtatgtgagggcggtggaggcgctgtcggggtctctgatgaggcacaacgccgccgtcatcgaattaggagccgacgacgctgcgctgttgcgctgcggcgtggaagcttccagattgtattttcggagcagagctcagcttggcgccggcaaaggaagccgtggagtttacatgtacagggccggaagggctttggaagattgggactcatcaccgccgtgtatggctgatattttcaggtgcatggggaaggtggcgcgcgtggcattgtctgcaatagcaaggcatcttcgtttgcgcagcgatgtttttagccatttgcttgatgatactccattgccggctaatgaagtgtcctcgtcagtgcttttggcagcctacacgaatgcatccttgcagaatgggaagggtgctattgggggagggaagccaggaattaatggtgaagtggagaagggattgttgacattgatttcttcagacagtcctggtatacaggtgtgtgaccccaatggtcgttggtactcggcagacagtgggtcagctcctggggatcttttactacttacaggtaaggcactcagccatgctaccgctggccttcgccctgctgcatcctataaagctgctcctgattattcctcaggcgttaatagtggtgggaggacatcacttgcatttaggctcatgccacaaggtaatgctatattagattgttctcccattgcagcagctggtcatgtcattccccagagttatgtgccaatatctgtaagccagtttatggacgatctttctgctgaggaagatgttttgtgcaatcattctgatagtgcttttgtaagttttattttcaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

372

Amino Acids

38.74

Weight (kDa)

6.5

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 557
AccB1I GGYRCC 1 cut(s) 401
AccB7I CCANNNNNTGG 1 cut(s) 1042
AccI GTMKAC 1 cut(s) 751
AccII CGCG 2 cut(s) 517, 519
AclWI GGATC 3 cut(s) 172, 224, 819
AcoI YGGCCR 1 cut(s) 87
AcuI CTGAAG 1 cut(s) 720
AcyI GRCGYC 2 cut(s) 186, 402
AfaI GTAC 2 cut(s) 434, 782
AfiI CCNNNNNNNGG 4 cut(s) 213, 239, 252, 1042
AflIII ACRYGT 1 cut(s) 429
AgsI TTSAA 1 cut(s) 1114
AhdI GACNNNNNGTC 1 cut(s) 796
AjiI CACGTC 1 cut(s) 21
AjnI CCWGG 3 cut(s) 688, 745, 805
AleI CACNNNNGTG 1 cut(s) 475
AluBI AGCT 8 cut(s) 121, 202, 365, 392, 397, 803, 884, 992
AluI AGCT 8 cut(s) 121, 202, 365, 392, 397, 803, 884, 992
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 3 cut(s) 172, 224, 819
AlwNI CAGNNNCTG 2 cut(s) 806, 992
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 5 cut(s) 87, 204, 254, 438, 856
ApeKI GCWGC 9 cut(s) 172, 338, 351, 558, 632, 869, 884, 986, 989
AseI ATTAAT 1 cut(s) 696
AspLEI GCGC 7 cut(s) 280, 343, 351, 404, 517, 519, 558
AspS9I GGNCC 3 cut(s) 205, 254, 438
AsuC2I CCSGG 3 cut(s) 208, 209, 253
AsuHPI GGTGA 2 cut(s) 462, 713
AvaI CYCGRG 1 cut(s) 207
AxyI CCTNAGG 1 cut(s) 901
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 2 cut(s) 247, 394
Bbv12I GWGCWC 1 cut(s) 394
BbvCI CCTCAGC 1 cut(s) 1059
BbvI GCAGC 9 cut(s) 159, 325, 338, 570, 644, 856, 871, 998, 1001
BceAI ACGGC 6 cut(s) 47, 102, 241, 296, 402, 460
BcgI CGANNNNNNTGC 5 cut(s) 37, 320, 354, 1037, 1071
BciT130I CCWGG 3 cut(s) 690, 747, 807
BcnI CCSGG 3 cut(s) 208, 209, 253
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 1 cut(s) 1117
BfoI RGCGCY 2 cut(s) 281, 405
BglI GCCNNNNNGGC 1 cut(s) 446
BlpI GCTNAGC 1 cut(s) 393
Bme1390I CCNGG 6 cut(s) 208, 209, 253, 690, 747, 807
BmeRI GACNNNNNGTC 1 cut(s) 796
BmeT110I CYCGRG 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 21
BmgT120I GGNCC 3 cut(s) 205, 254, 438
BmiI GGNNCC 3 cut(s) 244, 328, 403
BmrFI CCNGG 6 cut(s) 208, 209, 253, 690, 747, 807
BmsI GCATC 3 cut(s) 553, 656, 881
BplI GAGNNNNNCTC 2 cut(s) 376, 408
Bpu10I CCTNAGC 1 cut(s) 1059
Bpu1102I GCTNAGC 1 cut(s) 393
BpuMI CCSGG 3 cut(s) 208, 209, 253
BsaHI GRCGYC 2 cut(s) 186, 402
BsaI GGTCTC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 207, 418, 806
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 4 cut(s) 213, 239, 252, 1042
Bse118I RCCGGY 2 cut(s) 404, 598
Bse1I ACTGG 1 cut(s) 1036
Bse21I CCTNAGG 1 cut(s) 901
Bse3DI GCAATG 2 cut(s) 593, 981
BseBI CCWGG 3 cut(s) 690, 747, 807
BseDI CCNNGG 3 cut(s) 207, 418, 806
BseGI GGATG 2 cut(s) 647, 872
BseLI CCNNNNNNNGG 4 cut(s) 213, 239, 252, 1042
BseMI GCAATG 2 cut(s) 593, 981
BseMII CTCAG 5 cut(s) 131, 407, 853, 915, 1050
BseNI ACTGG 1 cut(s) 1036
BsePI GCGCGC 1 cut(s) 515
BseRI GAGGAG 1 cut(s) 37
BseXI GCAGC 9 cut(s) 159, 325, 338, 570, 644, 856, 871, 998, 1001
Bsh1236I CGCG 2 cut(s) 517, 519
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 5 cut(s) 89, 206, 256, 440, 858
BshNI GGYRCC 1 cut(s) 401
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 394
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 5 cut(s) 208, 252, 405, 441, 599
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 4 cut(s) 213, 239, 252, 1042
BsmAI GTCTC 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 476
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 5 cut(s) 89, 206, 256, 440, 858
Bso31I GGTCTC 1 cut(s) 294
BsoBI CYCGRG 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 247, 394
Bsp1407I TGTACA 1 cut(s) 432
Bsp143I GATC 6 cut(s) 3, 77, 177, 216, 811, 1048
Bsp1720I GCTNAGC 1 cut(s) 393
BspANI GGCC 5 cut(s) 89, 206, 256, 440, 858
BspCNI CTCAG 5 cut(s) 130, 406, 852, 914, 1051
BspFNI CGCG 2 cut(s) 517, 519
BspLI GGNNCC 3 cut(s) 244, 328, 403
BspPI GGATC 3 cut(s) 172, 224, 819
BspT107I GGYRCC 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 294
BsrDI GCAATG 2 cut(s) 593, 981
BsrFI RCCGGY 2 cut(s) 404, 598
BsrGI TGTACA 1 cut(s) 432
BsrI ACTGG 1 cut(s) 1036
BssAI RCCGGY 2 cut(s) 404, 598
BssECI CCNNGG 3 cut(s) 207, 418, 806
BssHII GCGCGC 1 cut(s) 515
BssMI GATC 6 cut(s) 3, 77, 177, 216, 811, 1048
BssNAI GTATAC 1 cut(s) 752
BssNI GRCGYC 2 cut(s) 186, 402
Bst1107I GTATAC 1 cut(s) 752
Bst2UI CCWGG 3 cut(s) 690, 747, 807
Bst4CI ACNGT 2 cut(s) 743, 794
BstACI GRCGYC 2 cut(s) 186, 402
BstAPI GCANNNNNTGC 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 432
BstC8I GCNNGC 6 cut(s) 200, 204, 406, 517, 600, 856
BstDEI CTNAG 5 cut(s) 117, 393, 839, 901, 1059
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 2 cut(s) 647, 872
BstFNI CGCG 2 cut(s) 517, 519
BstH2I RGCGCY 2 cut(s) 281, 405
BstHHI GCGC 7 cut(s) 280, 343, 351, 404, 517, 519, 558
BstKTI GATC 6 cut(s) 6, 80, 180, 219, 814, 1051
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 6 cut(s) 3, 77, 177, 216, 811, 1048
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 8 cut(s) 68, 127, 275, 335, 414, 446, 521, 530
BstNI CCWGG 3 cut(s) 690, 747, 807
BstNSI RCATGY 1 cut(s) 433
BstSCI CCNGG 6 cut(s) 206, 207, 251, 688, 745, 805
BstUI CGCG 2 cut(s) 517, 519
BstV1I GCAGC 9 cut(s) 159, 325, 338, 570, 644, 856, 871, 998, 1001
BstX2I RGATCY 2 cut(s) 216, 811
BstYI RGATCY 2 cut(s) 216, 811
BstZ17I GTATAC 1 cut(s) 752
Bsu36I CCTNAGG 1 cut(s) 901
BsuRI GGCC 5 cut(s) 89, 206, 256, 440, 858
BtgI CCRYGG 1 cut(s) 418
BtgZI GCGATG 1 cut(s) 576
BtrI CACGTC 1 cut(s) 21
BtsCI GGATG 2 cut(s) 647, 872
BtsIMutI CAGTG 2 cut(s) 627, 799
Cac8I GCNNGC 6 cut(s) 200, 204, 406, 517, 600, 856
CaiI CAGNNNCTG 2 cut(s) 806, 992
CfoI GCGC 7 cut(s) 280, 343, 351, 404, 517, 519, 558
Cfr10I RCCGGY 2 cut(s) 404, 598
Cfr13I GGNCC 3 cut(s) 205, 254, 438
Cfr9I CCCGGG 1 cut(s) 207
CseI GACGC 3 cut(s) 166, 194, 344
Csp6I GTAC 2 cut(s) 433, 781
CviAII CATG 6 cut(s) 167, 430, 502, 845, 946, 998
CviQI GTAC 2 cut(s) 433, 781
DdeI CTNAG 5 cut(s) 117, 393, 839, 901, 1059
DinI GGCGCC 1 cut(s) 403
DpnI GATC 6 cut(s) 5, 79, 179, 218, 813, 1050
DpnII GATC 6 cut(s) 3, 77, 177, 216, 811, 1048
DriI GACNNNNNGTC 1 cut(s) 796
EaeI YGGCCR 1 cut(s) 87
Eam1105I GACNNNNNGTC 1 cut(s) 796
EciI GGCGGA 1 cut(s) 141
Ecl136II GAGCTC 1 cut(s) 392
Eco24I GRGCYC 2 cut(s) 247, 394
Eco31I GGTCTC 1 cut(s) 294
Eco53kI GAGCTC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 720
Eco81I CCTNAGG 1 cut(s) 901
Eco88I CYCGRG 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 392
EcoRII CCWGG 3 cut(s) 688, 745, 805
EcoT22I ATGCAT 1 cut(s) 649
EcoT38I GRGCYC 2 cut(s) 247, 394
EgeI GGCGCC 1 cut(s) 403
EheI GGCGCC 1 cut(s) 403
FaeI CATG 6 cut(s) 170, 433, 505, 848, 949, 1001
FaqI GGGAC 1 cut(s) 476
FatI CATG 6 cut(s) 166, 429, 501, 844, 945, 997
FauI CCCGC 2 cut(s) 115, 146
FblI GTMKAC 1 cut(s) 751
FokI GGATG 2 cut(s) 634, 859
FriOI GRGCYC 2 cut(s) 247, 394
FspBI CTAG 1 cut(s) 1117
FspI TGCGCA 1 cut(s) 557
GlaI GCGC 7 cut(s) 279, 342, 350, 403, 516, 518, 557
HaeII RGCGCY 2 cut(s) 281, 405
HaeIII GGCC 5 cut(s) 89, 206, 256, 440, 858
HapII CCGG 5 cut(s) 208, 252, 405, 441, 599
HgaI GACGC 3 cut(s) 166, 194, 344
HhaI GCGC 7 cut(s) 280, 343, 351, 404, 517, 519, 558
Hin1I GRCGYC 2 cut(s) 186, 402
Hin1II CATG 6 cut(s) 170, 433, 505, 848, 949, 1001
Hin6I GCGC 7 cut(s) 278, 341, 349, 402, 515, 517, 556
HinP1I GCGC 7 cut(s) 278, 341, 349, 402, 515, 517, 556
HincII GTYRAC 1 cut(s) 723
HindII GTYRAC 1 cut(s) 723
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 1 cut(s) 464
HpaII CCGG 5 cut(s) 208, 252, 405, 441, 599
HphI GGTGA 2 cut(s) 462, 713
Hpy166II GTNNAC 3 cut(s) 427, 723, 752
Hpy188I TCNGA 6 cut(s) 216, 223, 294, 384, 739, 1087
Hpy188III TCNNGA 2 cut(s) 369, 890
Hpy8I GTNNAC 3 cut(s) 427, 723, 752
Hpy99I CGWCG 7 cut(s) 25, 68, 130, 160, 242, 335, 338
HpyAV CCTTC 6 cut(s) 158, 438, 502, 658, 706, 869
HpyCH4III ACNGT 2 cut(s) 743, 794
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 9 cut(s) 14, 501, 533, 647, 655, 872, 935, 986, 1077
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 127, 275, 335, 414, 446, 521, 530
HpyF3I CTNAG 5 cut(s) 117, 393, 839, 901, 1059
HpySE526I ACGT 1 cut(s) 20
Hsp92I GRCGYC 2 cut(s) 186, 402
Hsp92II CATG 6 cut(s) 170, 433, 505, 848, 949, 1001
HspAI GCGC 7 cut(s) 278, 341, 349, 402, 515, 517, 556
KasI GGCGCC 1 cut(s) 401
KroI GCCGGC 2 cut(s) 404, 598
KroNI GCCGGC 2 cut(s) 406, 600
Kzo9I GATC 6 cut(s) 3, 77, 177, 216, 811, 1048
LmnI GCTCC 6 cut(s) 126, 242, 326, 384, 808, 892
Lsp1109I GCAGC 9 cut(s) 159, 325, 338, 570, 644, 856, 871, 998, 1001
LweI GCATC 3 cut(s) 553, 656, 881
MaeI CTAG 1 cut(s) 1117
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 761
MalI GATC 6 cut(s) 5, 79, 179, 218, 813, 1050
MboI GATC 6 cut(s) 3, 77, 177, 216, 811, 1048
MboII GAAGA 4 cut(s) 467, 539, 726, 1076
MflI RGATCY 2 cut(s) 216, 811
MhlI GDGCHC 2 cut(s) 247, 394
MluCI AATT 2 cut(s) 320, 693
Mly113I GGCGCC 1 cut(s) 402
MlyI GAGTC 1 cut(s) 458
Mph1103I ATGCAT 1 cut(s) 649
MroNI GCCGGC 2 cut(s) 404, 598
MseI TTAA 2 cut(s) 696, 909
MslI CAYNNNNRTG 1 cut(s) 475
MspA1I CMGCKG 3 cut(s) 202, 854, 992
MspI CCGG 5 cut(s) 208, 252, 405, 441, 599
MspR9I CCNGG 6 cut(s) 208, 209, 253, 690, 747, 807
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 3 cut(s) 690, 747, 807
MvnI CGCG 2 cut(s) 517, 519
MwoI GCNNNNNNNGC 8 cut(s) 68, 127, 275, 335, 414, 446, 521, 530
NaeI GCCGGC 2 cut(s) 406, 600
NarI GGCGCC 1 cut(s) 402
NciI CCSGG 3 cut(s) 208, 209, 253
NdeII GATC 6 cut(s) 3, 77, 177, 216, 811, 1048
NgoMIV GCCGGC 2 cut(s) 404, 598
NlaIII CATG 6 cut(s) 170, 433, 505, 848, 949, 1001
NlaIV GGNNCC 3 cut(s) 244, 328, 403
NmeAIII GCCGAG 1 cut(s) 764
NmuCI GTSAC 1 cut(s) 761
NsbI TGCGCA 1 cut(s) 557
NsiI ATGCAT 1 cut(s) 649
NspI RCATGY 1 cut(s) 433
OliI CACNNNNGTG 1 cut(s) 475
PauI GCGCGC 1 cut(s) 515
PciI ACATGT 1 cut(s) 429
PctI GAATGC 1 cut(s) 649
PdiI GCCGGC 2 cut(s) 406, 600
PflMI CCANNNNNTGG 1 cut(s) 1042
PleI GAGTC 1 cut(s) 458
PluTI GGCGCC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 458
PscI ACATGT 1 cut(s) 429
PshBI ATTAAT 1 cut(s) 696
Psp124BI GAGCTC 1 cut(s) 394
Psp6I CCWGG 3 cut(s) 688, 745, 805
PspGI CCWGG 3 cut(s) 688, 745, 805
PspN4I GGNNCC 3 cut(s) 244, 328, 403
PspPI GGNCC 3 cut(s) 205, 254, 438
PstNI CAGNNNCTG 2 cut(s) 806, 992
PsuI RGATCY 2 cut(s) 216, 811
PteI GCGCGC 1 cut(s) 515
PvuII CAGCTG 2 cut(s) 202, 992
RsaI GTAC 2 cut(s) 434, 782
RsaNI GTAC 2 cut(s) 433, 781
RseI CAYNNNNRTG 1 cut(s) 475
SacI GAGCTC 1 cut(s) 394
SaqAI TTAA 2 cut(s) 696, 909
Sau3AI GATC 6 cut(s) 3, 77, 177, 216, 811, 1048
Sau96I GGNCC 3 cut(s) 205, 254, 438
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 6 cut(s) 208, 209, 253, 690, 747, 807
SduI GDGCHC 2 cut(s) 247, 394
SfaNI GCATC 3 cut(s) 553, 656, 881
SfoI GGCGCC 1 cut(s) 403
SmaI CCCGGG 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 475
Sse9I AATT 2 cut(s) 320, 693
SspDI GGCGCC 1 cut(s) 401
SspMI CTAG 1 cut(s) 1117
SstI GAGCTC 1 cut(s) 394
StyD4I CCNGG 6 cut(s) 206, 207, 251, 688, 745, 805
TaaI ACNGT 2 cut(s) 743, 794
TaiI ACGT 1 cut(s) 23
TaqI TCGA 2 cut(s) 162, 318
TasI AATT 2 cut(s) 320, 693
TatI WGTACW 1 cut(s) 432
TauI GCSGC 4 cut(s) 71, 191, 311, 357
Tru1I TTAA 2 cut(s) 696, 909
Tru9I TTAA 2 cut(s) 696, 909
TscAI CASTG 2 cut(s) 627, 799
TseFI GTSAC 1 cut(s) 761
TseI GCWGC 9 cut(s) 172, 338, 351, 558, 632, 869, 884, 986, 989
Tsp45I GTSAC 1 cut(s) 761
TspDTI ATGAA 1 cut(s) 621
TspGWI ACGGA 1 cut(s) 255
TspMI CCCGGG 1 cut(s) 207
TspRI CASTG 2 cut(s) 627, 799
Van91I CCANNNNNTGG 1 cut(s) 1042
VspI ATTAAT 1 cut(s) 696
XceI RCATGY 1 cut(s) 433
XcmI CCANNNNNNNNNTGG 1 cut(s) 851
XmaI CCCGGG 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 751
XspI CTAG 1 cut(s) 1117
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.