Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008096

Physical Location & Seq

Genomic Coordinates Reverse (-)

476086 .. 478290

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1005900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGTTGTGATCATGATGCAGCAGCAGACTTCTGCAGCACCTCCGTCGCACTCAATCACTACTCCCCCTTCCTCCACCACCACCACCACCCCCACCGCCATTAGATCACCCACGGCAACCCCTACACACTCCCAGCAGCACCCCTCGCCTCTCCACCGCCATGCTCTTCCTGTCCCGCCGCCTCCTCTCGACCACGTGCTGCCGATTGCGGCCGCCCACCCGTCCGGCGAGCCTGCGCCGACAATTCAGTGCCAGCTCGCGAGGGTCCGGCTCTCAGATATTGCCCCGTACCACGGGGCACCCGGTGGGTCGTATGTGAGGGCGGTGGAGGCGCTCTCGGGGTCTCTGACGAGGCACAATGCGGCTGTCATCGAATTGGGGAGCGAAGACACGGCGCTCCTGCGGTGCGGCTTGGAAGCCTCGAGGTTGTATTTTAGGAGCAGAGCTCAGCTCGGTGCTGGGAAAGGAAGCCGTGGAGTTCACATGTACAGAGCTGGGAGGGCTTTGGAAGATTGGGACTCATCCCCACCGTGCATGGCGGATATTTTTAGGTGCATGGGCAAGGCGGCCCATGTGGCTTTGTGTGCAGTAGCTAGGCATCTTCGTTTGCGAAGCGATGTTTTCAACCATTTGCTTGACGATACTCCATTGCCCACTAATGAGGTGTCGTCGTCAATTCTGGTTGCAACATACTCAAATGCTTCCTTGCAAAATGGAAAAGGTGCTATTGGGGGAGGGAAGCCAGGAATGAATGCTGAAGTTGAGAAGGGATTATTAACGTTGGTTTCCTCAGATAGTCCTGGTATACAGGTATGTGACCCCAATGGTCGTTGGTACCTAGCAGATGGTGGGTCAGCTGCTGGGGATCTTTTACTACTTACAGGTAAGGCACTCAGCCATGCTACTGCTGGCCTCCGCCCAGCTGCACCGTATAAAGCTGCTCCCGATTACTCTTCAGGCATTAGTAGTGGTGGGAGGACATCGCTTGCATTTAGGCTCATGCCACAAGGTAACGCTATATTAGATTGTTCTCCAGTTGCAGCAGCTGGTCATGTTATTCCCCACAGCTATGTCCCAATATCTGTAAGCCAGTTTATGGATGATCTTTCTGCTGAGGAAGATGTATTGGGCAGTCGTTCTGATAACACTTATGTAAGTTTTAGCTTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

391

Amino Acids

40.81

Weight (kDa)

7.27

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19895
fragaria_vesca	FvH4_4g36670 FvH4_4g36670 FvH4_4g36670 FvH4_4g36670
malus_domestica	MD13G1008400.v1.1 MD16G1005900.v1.1
prunus_persica	Prupe.1G344700_v2.0.a1
pyrus_communis	pycom13g00690 pycom16g00570
rosa_chinensis	RchiOBHm_Chr4g0446381
rosa_laevigata	RLG00000005667
rosa_multiflora	Rmu_sc0008360.1_g000002 Rmu_sc0010778.1_g000003 Rmu_sc0010778.1_g000004
rosa_roxburghii	Rroxscaffold_5G00386820
rosa_rugosa	Rorug04G0370800 Rorug04G0370800 Rorug04G0370900
rosa_samantha	Rh4AG432400 Rh4BG441600 Rh4CG458900 Rh4DG440300
rosa_wichuraiana	Rw4G036930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	421
Acc65I	GGTACC	1 cut(s)	834
AccB1I	GGYRCC	2 cut(s)	298, 834
AccB7I	CCANNNNNTGG	1 cut(s)	1096
AccI	GTMKAC	1 cut(s)	805
AccII	CGCG	1 cut(s)	260
AclI	AACGTT	1 cut(s)	779
AclWI	GGATC	1 cut(s)	873
AcoI	YGGCCR	1 cut(s)	210
AcuI	CTGAAG	2 cut(s)	777, 939
AcvI	CACGTG	1 cut(s)	196
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	3 cut(s)	290, 488, 836
AfiI	CCNNNNNNNGG	2 cut(s)	293, 1096
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	2 cut(s)	625, 1168
AjnI	CCWGG	2 cut(s)	742, 799
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	1 cut(s)	873
AlwNI	CAGNNNCTG	2 cut(s)	860, 1046
Ama87I	CYCGRG	2 cut(s)	337, 421
AoxI	GGCC	3 cut(s)	210, 567, 910
Asp718I	GGTACC	1 cut(s)	834
AspLEI	GCGC	3 cut(s)	238, 334, 397
AspS9I	GGNCC	2 cut(s)	265, 568
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	99
AvaI	CYCGRG	2 cut(s)	337, 421
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	301
BanI	GGYRCC	2 cut(s)	298, 834
BanII	GRGCYC	1 cut(s)	448
BbrPI	CACGTG	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	448
BbvCI	CCTCAGC	1 cut(s)	1113
BccI	CCATC	1 cut(s)	839
BceAI	ACGGC	3 cut(s)	129, 408, 456
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BciT130I	CCWGG	2 cut(s)	744, 801
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	594, 839
BfmI	CTRYAG	1 cut(s)	33
BfoI	RGCGCY	2 cut(s)	335, 398
BglI	GCCNNNNNGGC	1 cut(s)	575
BlpI	GCTNAGC	1 cut(s)	447
Bme1390I	CCNGG	3 cut(s)	303, 744, 801
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	2 cut(s)	337, 421
BmgT120I	GGNCC	2 cut(s)	265, 568
BmiI	GGNNCC	3 cut(s)	266, 300, 836
BmrFI	CCNGG	3 cut(s)	303, 744, 801
BmsI	GCATC	2 cut(s)	6, 607
BpiI	GAAGAC	1 cut(s)	393
BplI	GAGNNNNNCTC	6 cut(s)	320, 352, 430, 462, 435, 467
BpmI	CTGGAG	1 cut(s)	1017
Bpu10I	CCTNAGC	1 cut(s)	1113
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	3 cut(s)	111, 292, 472
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 1096
Bse1I	ACTGG	2 cut(s)	1034, 1090
Bse3DI	GCAATG	1 cut(s)	647
BseBI	CCWGG	2 cut(s)	744, 801
BseDI	CCNNGG	3 cut(s)	111, 292, 472
BseGI	GGATG	2 cut(s)	521, 1105
BseLI	CCNNNNNNNGG	2 cut(s)	293, 1096
BseMI	GCAATG	1 cut(s)	647
BseMII	CTCAG	5 cut(s)	288, 461, 804, 907, 1104
BseNI	ACTGG	2 cut(s)	1034, 1090
BseRI	GAGGAG	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	301
BseX3I	CGGCCG	1 cut(s)	210
BseYI	CCCAGC	5 cut(s)	132, 458, 494, 860, 919
BsgI	GTGCAG	2 cut(s)	606, 909
Bsh1236I	CGCG	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	212, 569, 912
BshNI	GGYRCC	2 cut(s)	298, 834
BsiEI	CGRYCG	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	448
BsiHKCI	CYCGRG	2 cut(s)	337, 421
BsiSI	CCGG	3 cut(s)	225, 268, 303
BslFI	GGGAC	3 cut(s)	158, 530, 1058
BslI	CCNNNNNNNGG	2 cut(s)	293, 1096
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	3 cut(s)	158, 530, 1058
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	3 cut(s)	212, 569, 912
Bso31I	GGTCTC	1 cut(s)	348
BsoBI	CYCGRG	2 cut(s)	337, 421
Bsp1286I	GDGCHC	2 cut(s)	301, 448
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	9, 104, 865, 1102
Bsp1720I	GCTNAGC	1 cut(s)	447
Bsp68I	TCGCGA	1 cut(s)	260
BspANI	GGCC	3 cut(s)	212, 569, 912
BspCNI	CTCAG	5 cut(s)	287, 460, 803, 906, 1105
BspFNI	CGCG	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	3 cut(s)	266, 300, 836
BspMAI	CTGCAG	1 cut(s)	37
BspPI	GGATC	1 cut(s)	873
BspQI	GCTCTTC	1 cut(s)	171
BspT107I	GGYRCC	2 cut(s)	298, 834
BspTNI	GGTCTC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	647
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	1034, 1090
BssECI	CCNNGG	3 cut(s)	111, 292, 472
BssMI	GATC	4 cut(s)	9, 104, 865, 1102
BssNAI	GTATAC	1 cut(s)	806
Bst1107I	GTATAC	1 cut(s)	806
Bst2UI	CCWGG	2 cut(s)	744, 801
Bst4CI	ACNGT	2 cut(s)	531, 930
Bst6I	CTCTTC	2 cut(s)	171, 958
BstAUI	TGTACA	1 cut(s)	486
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	6 cut(s)	230, 234, 254, 258, 910, 987
BstDEI	CTNAG	5 cut(s)	274, 447, 790, 893, 1113
BstDSI	CCRYGG	3 cut(s)	111, 292, 472
BstF5I	GGATG	2 cut(s)	521, 1105
BstFNI	CGCG	1 cut(s)	260
BstH2I	RGCGCY	2 cut(s)	335, 398
BstHHI	GCGC	3 cut(s)	238, 334, 397
BstKTI	GATC	4 cut(s)	12, 107, 868, 1105
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	4 cut(s)	9, 104, 865, 1102
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 329, 500, 575, 584
BstNI	CCWGG	2 cut(s)	744, 801
BstNSI	RCATGY	1 cut(s)	487
BstSCI	CCNGG	3 cut(s)	301, 742, 799
BstSFI	CTRYAG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	1 cut(s)	260
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	865
BstYI	RGATCY	1 cut(s)	865
BstZ17I	GTATAC	1 cut(s)	806
BstZI	CGGCCG	1 cut(s)	210
BsuRI	GGCC	3 cut(s)	212, 569, 912
BtgI	CCRYGG	3 cut(s)	111, 292, 472
BtgZI	GCGATG	2 cut(s)	630, 966
BtsCI	GGATG	2 cut(s)	521, 1105
BtsIMutI	CAGTG	1 cut(s)	254
BtuMI	TCGCGA	1 cut(s)	260
Cac8I	GCNNGC	6 cut(s)	230, 234, 254, 258, 910, 987
CaiI	CAGNNNCTG	2 cut(s)	860, 1046
CciI	TCATGA	1 cut(s)	12
CciNI	GCGGCCGC	1 cut(s)	210
CfoI	GCGC	3 cut(s)	238, 334, 397
Cfr13I	GGNCC	2 cut(s)	265, 568
Csp6I	GTAC	3 cut(s)	289, 487, 835
CviAII	CATG	9 cut(s)	13, 161, 484, 535, 556, 572, 899, 1000, 1052
CviQI	GTAC	3 cut(s)	289, 487, 835
DdeI	CTNAG	5 cut(s)	274, 447, 790, 893, 1113
DpnI	GATC	4 cut(s)	11, 106, 867, 1104
DpnII	GATC	4 cut(s)	9, 104, 865, 1102
DraIII	CACNNNGTG	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	210
EagI	CGGCCG	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	171, 958
EarI	CTCTTC	2 cut(s)	171, 958
EciI	GGCGGA	2 cut(s)	554, 905
Ecl136II	GAGCTC	1 cut(s)	446
EclXI	CGGCCG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	448
Eco31I	GGTCTC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	265
Eco52I	CGGCCG	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	446
Eco57I	CTGAAG	2 cut(s)	777, 939
Eco72I	CACGTG	1 cut(s)	196
Eco88I	CYCGRG	2 cut(s)	337, 421
EcoICRI	GAGCTC	1 cut(s)	446
EcoRII	CCWGG	2 cut(s)	742, 799
EcoT38I	GRGCYC	1 cut(s)	448
FaeI	CATG	9 cut(s)	16, 164, 487, 538, 559, 575, 902, 1003, 1055
FaqI	GGGAC	3 cut(s)	158, 530, 1058
FatI	CATG	9 cut(s)	12, 160, 483, 534, 555, 571, 898, 999, 1051
FauI	CCCGC	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	9
FblI	GTMKAC	1 cut(s)	805
FokI	GGATG	2 cut(s)	508, 1112
FriOI	GRGCYC	1 cut(s)	448
FspBI	CTAG	2 cut(s)	594, 839
GlaI	GCGC	3 cut(s)	237, 333, 396
GsaI	CCCAGC	5 cut(s)	136, 462, 498, 864, 923
GsuI	CTGGAG	1 cut(s)	1017
HaeII	RGCGCY	2 cut(s)	335, 398
HaeIII	GGCC	3 cut(s)	212, 569, 912
HapII	CCGG	3 cut(s)	225, 268, 303
HhaI	GCGC	3 cut(s)	238, 334, 397
Hin1II	CATG	9 cut(s)	16, 164, 487, 538, 559, 575, 902, 1003, 1055
Hin6I	GCGC	3 cut(s)	236, 332, 395
HinP1I	GCGC	3 cut(s)	236, 332, 395
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	3 cut(s)	225, 268, 303
HphI	GGTGA	1 cut(s)	99
Hpy166II	GTNNAC	2 cut(s)	481, 806
Hpy188I	TCNGA	4 cut(s)	277, 348, 793, 1141
Hpy188III	TCNNGA	4 cut(s)	13, 188, 259, 944
Hpy8I	GTNNAC	2 cut(s)	481, 806
Hpy99I	CGWCG	2 cut(s)	49, 673
HpyAV	CCTTC	2 cut(s)	78, 760
HpyCH4III	ACNGT	2 cut(s)	531, 930
HpyCH4IV	ACGT	2 cut(s)	195, 779
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 329, 500, 575, 584
HpyF3I	CTNAG	5 cut(s)	274, 447, 790, 893, 1113
HpySE526I	ACGT	2 cut(s)	195, 779
Hsp92II	CATG	9 cut(s)	16, 164, 487, 538, 559, 575, 902, 1003, 1055
HspAI	GCGC	3 cut(s)	236, 332, 395
KpnI	GGTACC	1 cut(s)	838
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	9, 104, 865, 1102
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	4 cut(s)	381, 402, 438, 946
LweI	GCATC	2 cut(s)	6, 607
MaeI	CTAG	2 cut(s)	594, 839
MaeII	ACGT	2 cut(s)	195, 779
MaeIII	GTNAC	2 cut(s)	815, 1010
MalI	GATC	4 cut(s)	11, 106, 867, 1104
MboI	GATC	4 cut(s)	9, 104, 865, 1102
MboII	GAAGA	6 cut(s)	158, 398, 521, 593, 945, 1130
MflI	RGATCY	1 cut(s)	865
MhlI	GDGCHC	2 cut(s)	301, 448
MluCI	AATT	3 cut(s)	243, 374, 675
MlyI	GAGTC	1 cut(s)	512
MseI	TTAA	1 cut(s)	776
MslI	CAYNNNNRTG	2 cut(s)	159, 1068
MspA1I	CMGCKG	3 cut(s)	857, 923, 1046
MspI	CCGG	3 cut(s)	225, 268, 303
MspR9I	CCNGG	3 cut(s)	303, 744, 801
Mva1269I	GAATGC	1 cut(s)	757
MvaI	CCWGG	2 cut(s)	744, 801
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	5 cut(s)	145, 329, 500, 575, 584
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	4 cut(s)	9, 104, 865, 1102
NlaIII	CATG	9 cut(s)	16, 164, 487, 538, 559, 575, 902, 1003, 1055
NlaIV	GGNNCC	3 cut(s)	266, 300, 836
NmuCI	GTSAC	1 cut(s)	815
NotI	GCGGCCGC	1 cut(s)	210
NruI	TCGCGA	1 cut(s)	260
NspI	RCATGY	1 cut(s)	487
PaeR7I	CTCGAG	1 cut(s)	421
PagI	TCATGA	1 cut(s)	12
PciI	ACATGT	1 cut(s)	483
PciSI	GCTCTTC	1 cut(s)	171
PctI	GAATGC	1 cut(s)	757
PflMI	CCANNNNNTGG	1 cut(s)	1096
PleI	GAGTC	1 cut(s)	512
PmaCI	CACGTG	1 cut(s)	196
PmlI	CACGTG	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	512
Ppu21I	YACGTR	1 cut(s)	196
PscI	ACATGT	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	448
Psp1406I	AACGTT	1 cut(s)	779
Psp6I	CCWGG	2 cut(s)	742, 799
PspCI	CACGTG	1 cut(s)	196
PspFI	CCCAGC	5 cut(s)	132, 458, 494, 860, 919
PspGI	CCWGG	2 cut(s)	742, 799
PspN4I	GGNNCC	3 cut(s)	266, 300, 836
PspPI	GGNCC	2 cut(s)	265, 568
PspXI	VCTCGAGB	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	37
PstNI	CAGNNNCTG	2 cut(s)	860, 1046
PsuI	RGATCY	1 cut(s)	865
PvuII	CAGCTG	3 cut(s)	857, 923, 1046
RruI	TCGCGA	1 cut(s)	260
RsaI	GTAC	3 cut(s)	290, 488, 836
RsaNI	GTAC	3 cut(s)	289, 487, 835
RseI	CAYNNNNRTG	2 cut(s)	159, 1068
SacI	GAGCTC	1 cut(s)	448
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	776
Sau3AI	GATC	4 cut(s)	9, 104, 865, 1102
Sau96I	GGNCC	2 cut(s)	265, 568
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	3 cut(s)	303, 744, 801
SduI	GDGCHC	2 cut(s)	301, 448
SfaNI	GCATC	2 cut(s)	6, 607
SfcI	CTRYAG	1 cut(s)	33
Sfr274I	CTCGAG	1 cut(s)	421
SinI	GGWCC	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	421
SmiMI	CAYNNNNRTG	2 cut(s)	159, 1068
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	3 cut(s)	243, 374, 675
SspMI	CTAG	2 cut(s)	594, 839
SstI	GAGCTC	1 cut(s)	448
StyD4I	CCNGG	3 cut(s)	301, 742, 799
TaaI	ACNGT	2 cut(s)	531, 930
TaiI	ACGT	2 cut(s)	198, 782
TaqI	TCGA	3 cut(s)	189, 372, 422
TasI	AATT	3 cut(s)	243, 374, 675
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	6 cut(s)	181, 212, 215, 365, 411, 569
Tru1I	TTAA	1 cut(s)	776
Tru9I	TTAA	1 cut(s)	776
TscAI	CASTG	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	815
Tsp45I	GTSAC	1 cut(s)	815
TspDTI	ATGAA	1 cut(s)	764
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	254
Van91I	CCANNNNNTGG	1 cut(s)	1096
VpaK11BI	GGWCC	1 cut(s)	265
XceI	RCATGY	1 cut(s)	487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	905
XhoI	CTCGAG	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	805
XspI	CTAG	2 cut(s)	594, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.