Prokaryotic RING finger family 4
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G23110 |
| fragaria_vesca | FvH4_4g36870 FvH4_4g36870 FvH4_4g36870 |
| malus_domestica | MD16G1001800.v1.1 |
| prunus_persica | Prupe.1G347000_v2.0.a1 |
| pyrus_communis | pycom16g00380 |
| rosa_chinensis | RchiOBHm_Chr4g0446631 |
| rosa_laevigata | RLG00000005643 |
| rosa_multiflora | Rmu_sc0001753.1_g000045 |
| rosa_roxburghii | Rroxscaffold_5G00387020 |
| rosa_rugosa | Rorug04G0373500 |
| rosa_samantha | Rh4AG434700 Rh4BG443800 Rh4CG461100 Rh4DG442600 |
| rosa_wichuraiana | Rw4G037170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 3948, 8036, 11442 |
| AarI | CACCTGC | 2 cut(s) | 9058, 13987 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 31 |
| Acc16I | TGCGCA | 1 cut(s) | 8148 |
| AccB1I | GGYRCC | 5 cut(s) | 113, 158, 229, 1273, 2357 |
| AccB7I | CCANNNNNTGG | 8 cut(s) | 2261, 3431, 3457, 4691, 9806, 10075, 13730, 13946 |
| AccBSI | CCGCTC | 1 cut(s) | 11005 |
| AccI | GTMKAC | 6 cut(s) | 5776, 5935, 7325, 7355, 9814, 13281 |
| AccII | CGCG | 4 cut(s) | 2554, 4457, 6058, 7072 |
| AccIII | TCCGGA | 3 cut(s) | 106, 7453, 13708 |
| AclI | AACGTT | 2 cut(s) | 456, 11530 |
| AcyI | GRCGYC | 5 cut(s) | 26, 159, 230, 267, 1274 |
| AdeI | CACNNNGTG | 2 cut(s) | 3431, 7823 |
| AfeI | AGCGCT | 1 cut(s) | 5471 |
| AflIII | ACRYGT | 7 cut(s) | 2369, 3339, 3685, 5389, 6444, 12813, 13045 |
| AgeI | ACCGGT | 1 cut(s) | 8846 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2032 |
| AhlI | ACTAGT | 3 cut(s) | 6397, 11069, 12871 |
| AleI | CACNNNNGTG | 1 cut(s) | 119 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1219, 1251, 10071, 10103 |
| Alw44I | GTGCAC | 1 cut(s) | 9099 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 1007, 1055, 2624, 2638, 5771 |
| Ama87I | CYCGRG | 3 cut(s) | 473, 5679, 9396 |
| Aor13HI | TCCGGA | 3 cut(s) | 106, 7453, 13708 |
| Aor51HI | AGCGCT | 1 cut(s) | 5471 |
| ApaI | GGGCCC | 2 cut(s) | 10455, 12828 |
| ApaLI | GTGCAC | 1 cut(s) | 9099 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 5420, 5452, 5714, 5746 |
| AseI | ATTAAT | 3 cut(s) | 3032, 3558, 9590 |
| AsiGI | ACCGGT | 1 cut(s) | 8846 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 1470, 4632, 5153, 8114, 10910, 11109, 12228 |
| AsuC2I | CCSGG | 4 cut(s) | 86, 474, 475, 577 |
| AsuII | TTCGAA | 3 cut(s) | 467, 5878, 11893 |
| AsuNHI | GCTAGC | 2 cut(s) | 3356, 8627 |
| AvaI | CYCGRG | 3 cut(s) | 473, 5679, 9396 |
| AxyI | CCTNAGG | 4 cut(s) | 1637, 2724, 4595, 6482 |
| BaeGI | GKGCMC | 4 cut(s) | 116, 9103, 10455, 12828 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2638, 2671, 11706, 11739 |
| BalI | TGGCCA | 7 cut(s) | 1348, 4428, 6361, 9791, 10760, 12412, 13734 |
| BamHI | GGATCC | 3 cut(s) | 7714, 12911, 13331 |
| BanI | GGYRCC | 5 cut(s) | 113, 158, 229, 1273, 2357 |
| BanII | GRGCYC | 8 cut(s) | 5271, 6265, 9434, 10455, 10542, 10814, 12335, 12828 |
| BauI | CACGAG | 3 cut(s) | 73, 3162, 13988 |
| BbvCI | CCTCAGC | 1 cut(s) | 9556 |
| BceAI | ACGGC | 9 cut(s) | 254, 343, 379, 1024, 5325, 8902, 10401, 10933, 10977 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 2069, 2103, 7672, 7706, 7947, 7981, 12072, 12106 |
| BciVI | GTATCC | 4 cut(s) | 3105, 10884, 11707, 13183 |
| BclI | TGATCA | 6 cut(s) | 1480, 3490, 4639, 8875, 11472, 11602 |
| BcnI | CCSGG | 4 cut(s) | 86, 474, 475, 577 |
| BcuI | ACTAGT | 3 cut(s) | 6397, 11069, 12871 |
| BfoI | RGCGCY | 4 cut(s) | 162, 233, 1277, 5473 |
| BfuI | GTATCC | 4 cut(s) | 3105, 10884, 11707, 13183 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 614, 7072 |
| BglII | AGATCT | 5 cut(s) | 2539, 4402, 10930, 11779, 12964 |
| BlpI | GCTNAGC | 2 cut(s) | 8717, 10536 |
| BmcAI | AGTACT | 4 cut(s) | 1961, 2561, 4329, 10187 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2032 |
| BmeT110I | CYCGRG | 3 cut(s) | 473, 5679, 9396 |
| BmrI | ACTGGG | 7 cut(s) | 4484, 5153, 6505, 10025, 10297, 10801, 13778 |
| BmtI | GCTAGC | 2 cut(s) | 3360, 8631 |
| BmuI | ACTGGG | 7 cut(s) | 4484, 5153, 6505, 10025, 10297, 10801, 13778 |
| BoxI | GACNNNNGTC | 2 cut(s) | 54, 9368 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 12250, 12282, 13674, 13706, 13997, 14029 |
| Bpu10I | CCTNAGC | 4 cut(s) | 7761, 9556, 12326, 13299 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 8717, 10536 |
| Bpu14I | TTCGAA | 3 cut(s) | 467, 5878, 11893 |
| BpuMI | CCSGG | 4 cut(s) | 86, 474, 475, 577 |
| Bsa29I | ATCGAT | 1 cut(s) | 9283 |
| BsaAI | YACGTR | 2 cut(s) | 3686, 4103 |
| BsaBI | GATNNNNATC | 3 cut(s) | 4977, 9405, 13611 |
| BsaHI | GRCGYC | 5 cut(s) | 26, 159, 230, 267, 1274 |
| BsaI | GGTCTC | 6 cut(s) | 516, 7190, 7612, 10503, 13677, 14293 |
| BsaWI | WCCGGW | 7 cut(s) | 106, 588, 4704, 7453, 8846, 13362, 13708 |
| Bse118I | RCCGGY | 4 cut(s) | 155, 344, 348, 8846 |
| Bse21I | CCTNAGG | 4 cut(s) | 1637, 2724, 4595, 6482 |
| Bse8I | GATNNNNATC | 3 cut(s) | 4977, 9405, 13611 |
| BseAI | TCCGGA | 3 cut(s) | 106, 7453, 13708 |
| BseCI | ATCGAT | 1 cut(s) | 9283 |
| BseJI | GATNNNNATC | 3 cut(s) | 4977, 9405, 13611 |
| BseRI | GAGGAG | 4 cut(s) | 296, 3801, 5697, 13256 |
| BseSI | GKGCMC | 4 cut(s) | 116, 9103, 10455, 12828 |
| BseX3I | CGGCCG | 1 cut(s) | 346 |
| BseYI | CCCAGC | 3 cut(s) | 1528, 2022, 2769 |
| BsgI | GTGCAG | 5 cut(s) | 1666, 6548, 6998, 7800, 8787 |
| Bsh1236I | CGCG | 4 cut(s) | 2554, 4457, 6058, 7072 |
| Bsh1285I | CGRYCG | 2 cut(s) | 187, 349 |
| BshNI | GGYRCC | 5 cut(s) | 113, 158, 229, 1273, 2357 |
| BshTI | ACCGGT | 1 cut(s) | 8846 |
| BshVI | ATCGAT | 1 cut(s) | 9283 |
| BsiEI | CGRYCG | 2 cut(s) | 187, 349 |
| BsiHKCI | CYCGRG | 3 cut(s) | 473, 5679, 9396 |
| BsiWI | CGTACG | 1 cut(s) | 8047 |
| BsmBI | CGTCTC | 5 cut(s) | 18, 24, 179, 1665, 4811 |
| Bso31I | GGTCTC | 6 cut(s) | 516, 7190, 7612, 10503, 13677, 14293 |
| BsoBI | CYCGRG | 3 cut(s) | 473, 5679, 9396 |
| Bsp119I | TTCGAA | 3 cut(s) | 467, 5878, 11893 |
| Bsp120I | GGGCCC | 2 cut(s) | 10451, 12824 |
| Bsp13I | TCCGGA | 3 cut(s) | 106, 7453, 13708 |
| Bsp1407I | TGTACA | 3 cut(s) | 958, 1150, 8320 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 8717, 10536 |
| Bsp19I | CCATGG | 8 cut(s) | 1370, 3281, 6970, 7574, 8282, 8672, 8912, 12907 |
| Bsp68I | TCGCGA | 1 cut(s) | 4457 |
| BspDI | ATCGAT | 1 cut(s) | 9283 |
| BspEI | TCCGGA | 3 cut(s) | 106, 7453, 13708 |
| BspFNI | CGCG | 4 cut(s) | 2554, 4457, 6058, 7072 |
| BspHI | TCATGA | 3 cut(s) | 3982, 9150, 13036 |
| BspMAI | CTGCAG | 9 cut(s) | 2634, 6232, 8100, 10010, 10567, 12808, 12869, 13962, 13984 |
| BspOI | GCTAGC | 2 cut(s) | 3360, 8631 |
| BspQI | GCTCTTC | 2 cut(s) | 1359, 10927 |
| BspT104I | TTCGAA | 3 cut(s) | 467, 5878, 11893 |
| BspT107I | GGYRCC | 5 cut(s) | 113, 158, 229, 1273, 2357 |
| BspTNI | GGTCTC | 6 cut(s) | 516, 7190, 7612, 10503, 13677, 14293 |
| BsrBI | CCGCTC | 1 cut(s) | 11005 |
| BsrFI | RCCGGY | 4 cut(s) | 155, 344, 348, 8846 |
| BsrGI | TGTACA | 3 cut(s) | 958, 1150, 8320 |
| BssAI | RCCGGY | 4 cut(s) | 155, 344, 348, 8846 |
| BssNAI | GTATAC | 1 cut(s) | 9815 |
| BssNI | GRCGYC | 5 cut(s) | 26, 159, 230, 267, 1274 |
| BssSI | CACGAG | 3 cut(s) | 73, 3162, 13988 |
| Bst1107I | GTATAC | 1 cut(s) | 9815 |
| Bst2BI | CACGAG | 3 cut(s) | 73, 3162, 13988 |
| BstACI | GRCGYC | 5 cut(s) | 26, 159, 230, 267, 1274 |
| BstAUI | TGTACA | 3 cut(s) | 958, 1150, 8320 |
| BstBAI | YACGTR | 2 cut(s) | 3686, 4103 |
| BstBI | TTCGAA | 3 cut(s) | 467, 5878, 11893 |
| BstEII | GGTNACC | 1 cut(s) | 10057 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 7563, 12694 |
| BstFNI | CGCG | 4 cut(s) | 2554, 4457, 6058, 7072 |
| BstH2I | RGCGCY | 4 cut(s) | 162, 233, 1277, 5473 |
| BstMCI | CGRYCG | 2 cut(s) | 187, 349 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 54, 9368 |
| BstPI | GGTNACC | 1 cut(s) | 10057 |
| BstSLI | GKGCMC | 4 cut(s) | 116, 9103, 10455, 12828 |
| BstSNI | TACGTA | 1 cut(s) | 4103 |
| BstUI | CGCG | 4 cut(s) | 2554, 4457, 6058, 7072 |
| BstXI | CCANNNNNNTGG | 6 cut(s) | 226, 2942, 7747, 10283, 11962, 12001 |
| BstZ17I | GTATAC | 1 cut(s) | 9815 |
| BstZI | CGGCCG | 1 cut(s) | 346 |
| Bsu15I | ATCGAT | 1 cut(s) | 9283 |
| Bsu36I | CCTNAGG | 4 cut(s) | 1637, 2724, 4595, 6482 |
| BsuI | GTATCC | 4 cut(s) | 3105, 10884, 11707, 13183 |
| BsuTUI | ATCGAT | 1 cut(s) | 9283 |
| BtsI | GCAGTG | 4 cut(s) | 840, 1831, 7092, 11179 |
| BtuMI | TCGCGA | 1 cut(s) | 4457 |
| CaiI | CAGNNNCTG | 5 cut(s) | 1007, 1055, 2624, 2638, 5771 |
| CciI | TCATGA | 3 cut(s) | 3982, 9150, 13036 |
| Cfr10I | RCCGGY | 4 cut(s) | 155, 344, 348, 8846 |
| Cfr9I | CCCGGG | 1 cut(s) | 473 |
| ClaI | ATCGAT | 1 cut(s) | 9283 |
| CseI | GACGC | 6 cut(s) | 34, 275, 2345, 9143, 11265, 12452 |
| CsiI | ACCWGGT | 3 cut(s) | 3427, 6784, 7593 |
| CspAI | ACCGGT | 1 cut(s) | 8846 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 5841, 5876, 11138, 11173 |
| DinI | GGCGCC | 3 cut(s) | 160, 231, 1275 |
| DraI | TTTAAA | 4 cut(s) | 2454, 5896, 11736, 12654 |
| DraIII | CACNNNGTG | 2 cut(s) | 3431, 7823 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 31 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2032 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 31 |
| EagI | CGGCCG | 1 cut(s) | 346 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2032 |
| EciI | GGCGGA | 2 cut(s) | 4361, 7707 |
| Ecl136II | GAGCTC | 2 cut(s) | 9432, 10540 |
| EclXI | CGGCCG | 1 cut(s) | 346 |
| Eco105I | TACGTA | 1 cut(s) | 4103 |
| Eco147I | AGGCCT | 2 cut(s) | 335, 6167 |
| Eco24I | GRGCYC | 8 cut(s) | 5271, 6265, 9434, 10455, 10542, 10814, 12335, 12828 |
| Eco31I | GGTCTC | 6 cut(s) | 516, 7190, 7612, 10503, 13677, 14293 |
| Eco32I | GATATC | 3 cut(s) | 5251, 9347, 12734 |
| Eco47III | AGCGCT | 1 cut(s) | 5471 |
| Eco52I | CGGCCG | 1 cut(s) | 346 |
| Eco53kI | GAGCTC | 2 cut(s) | 9432, 10540 |
| Eco81I | CCTNAGG | 4 cut(s) | 1637, 2724, 4595, 6482 |
| Eco88I | CYCGRG | 3 cut(s) | 473, 5679, 9396 |
| Eco91I | GGTNACC | 1 cut(s) | 10057 |
| EcoICRI | GAGCTC | 2 cut(s) | 9432, 10540 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 7563, 12694 |
| EcoO65I | GGTNACC | 1 cut(s) | 10057 |
| EcoRI | GAATTC | 8 cut(s) | 1835, 3738, 3746, 4236, 6896, 8018, 12484, 12883 |
| EcoRV | GATATC | 3 cut(s) | 5251, 9347, 12734 |
| EcoT22I | ATGCAT | 6 cut(s) | 2896, 3039, 7659, 11987, 12152, 13341 |
| EcoT38I | GRGCYC | 8 cut(s) | 5271, 6265, 9434, 10455, 10542, 10814, 12335, 12828 |
| EgeI | GGCGCC | 3 cut(s) | 160, 231, 1275 |
| EheI | GGCGCC | 3 cut(s) | 160, 231, 1275 |
| Esp3I | CGTCTC | 5 cut(s) | 18, 24, 179, 1665, 4811 |
| FauI | CCCGC | 4 cut(s) | 5839, 10998, 12590, 13262 |
| FauNDI | CATATG | 3 cut(s) | 5526, 10767, 11091 |
| FbaI | TGATCA | 6 cut(s) | 1480, 3490, 4639, 8875, 11472, 11602 |
| FblI | GTMKAC | 6 cut(s) | 5776, 5935, 7325, 7355, 9814, 13281 |
| FriOI | GRGCYC | 8 cut(s) | 5271, 6265, 9434, 10455, 10542, 10814, 12335, 12828 |
| FspI | TGCGCA | 1 cut(s) | 8148 |
| GsaI | CCCAGC | 3 cut(s) | 1532, 2026, 2773 |
| HaeII | RGCGCY | 4 cut(s) | 162, 233, 1277, 5473 |
| HgaI | GACGC | 6 cut(s) | 34, 275, 2345, 9143, 11265, 12452 |
| Hin1I | GRCGYC | 5 cut(s) | 26, 159, 230, 267, 1274 |
| HincII | GTYRAC | 8 cut(s) | 67, 4906, 6403, 7356, 7474, 9895, 10249, 14203 |
| HindII | GTYRAC | 8 cut(s) | 67, 4906, 6403, 7356, 7474, 9895, 10249, 14203 |
| Hpy99I | CGWCG | 4 cut(s) | 28, 269, 400, 1191 |
| Hsp92I | GRCGYC | 5 cut(s) | 26, 159, 230, 267, 1274 |
| KasI | GGCGCC | 3 cut(s) | 158, 229, 1273 |
| KflI | GGGWCCC | 3 cut(s) | 921, 2026, 13452 |
| Kpn2I | TCCGGA | 3 cut(s) | 106, 7453, 13708 |
| KroI | GCCGGC | 1 cut(s) | 155 |
| KroNI | GCCGGC | 1 cut(s) | 157 |
| Ksp22I | TGATCA | 6 cut(s) | 1480, 3490, 4639, 8875, 11472, 11602 |
| LguI | GCTCTTC | 2 cut(s) | 1359, 10927 |
| MabI | ACCWGGT | 3 cut(s) | 3427, 6784, 7593 |
| MbiI | CCGCTC | 1 cut(s) | 11005 |
| MlsI | TGGCCA | 7 cut(s) | 1348, 4428, 6361, 9791, 10760, 12412, 13734 |
| MluNI | TGGCCA | 7 cut(s) | 1348, 4428, 6361, 9791, 10760, 12412, 13734 |
| Mly113I | GGCGCC | 3 cut(s) | 159, 230, 1274 |
| Mox20I | TGGCCA | 7 cut(s) | 1348, 4428, 6361, 9791, 10760, 12412, 13734 |
| Mph1103I | ATGCAT | 6 cut(s) | 2896, 3039, 7659, 11987, 12152, 13341 |
| MroI | TCCGGA | 3 cut(s) | 106, 7453, 13708 |
| MroNI | GCCGGC | 1 cut(s) | 155 |
| MroXI | GAANNNNTTC | 7 cut(s) | 1470, 4632, 5153, 8114, 10910, 11109, 12228 |
| MscI | TGGCCA | 7 cut(s) | 1348, 4428, 6361, 9791, 10760, 12412, 13734 |
| MslI | CAYNNNNRTG | 7 cut(s) | 119, 4538, 5394, 6699, 7791, 8959, 9106 |
| Msp20I | TGGCCA | 7 cut(s) | 1348, 4428, 6361, 9791, 10760, 12412, 13734 |
| MvnI | CGCG | 4 cut(s) | 2554, 4457, 6058, 7072 |
| NaeI | GCCGGC | 1 cut(s) | 157 |
| NarI | GGCGCC | 3 cut(s) | 159, 230, 1274 |
| NciI | CCSGG | 4 cut(s) | 86, 474, 475, 577 |
| NcoI | CCATGG | 8 cut(s) | 1370, 3281, 6970, 7574, 8282, 8672, 8912, 12907 |
| NdeI | CATATG | 3 cut(s) | 5526, 10767, 11091 |
| NgoMIV | GCCGGC | 1 cut(s) | 155 |
| NheI | GCTAGC | 2 cut(s) | 3356, 8627 |
| NmeAIII | GCCGAG | 3 cut(s) | 634, 8536, 9792 |
| NruI | TCGCGA | 1 cut(s) | 4457 |
| NsbI | TGCGCA | 1 cut(s) | 8148 |
| NsiI | ATGCAT | 6 cut(s) | 2896, 3039, 7659, 11987, 12152, 13341 |
| NspV | TTCGAA | 3 cut(s) | 467, 5878, 11893 |
| OliI | CACNNNNGTG | 1 cut(s) | 119 |
| PaeI | GCATGC | 2 cut(s) | 3364, 8947 |
| PaeR7I | CTCGAG | 1 cut(s) | 5679 |
| PagI | TCATGA | 3 cut(s) | 3982, 9150, 13036 |
| PaqCI | CACCTGC | 2 cut(s) | 9058, 13987 |
| PasI | CCCWGGG | 2 cut(s) | 5193, 10075 |
| PceI | AGGCCT | 2 cut(s) | 335, 6167 |
| PciI | ACATGT | 6 cut(s) | 2369, 3339, 5389, 6444, 12813, 13045 |
| PciSI | GCTCTTC | 2 cut(s) | 1359, 10927 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 32, 11890 |
| PdiI | GCCGGC | 1 cut(s) | 157 |
| PdmI | GAANNNNTTC | 7 cut(s) | 1470, 4632, 5153, 8114, 10910, 11109, 12228 |
| Pfl23II | CGTACG | 1 cut(s) | 8047 |
| PflFI | GACNNNGTC | 2 cut(s) | 2339, 11012 |
| PflMI | CCANNNNNTGG | 8 cut(s) | 2261, 3431, 3457, 4691, 9806, 10075, 13730, 13946 |
| PfoI | TCCNGGA | 9 cut(s) | 84, 575, 4296, 4690, 6887, 7913, 8616, 11860, 13492 |
| PinAI | ACCGGT | 1 cut(s) | 8846 |
| PluTI | GGCGCC | 3 cut(s) | 162, 233, 1277 |
| Ppu21I | YACGTR | 2 cut(s) | 3686, 4103 |
| PpuMI | RGGWCCY | 6 cut(s) | 242, 921, 2026, 4358, 5309, 13452 |
| PscI | ACATGT | 6 cut(s) | 2369, 3339, 5389, 6444, 12813, 13045 |
| PshAI | GACNNNNGTC | 2 cut(s) | 54, 9368 |
| PshBI | ATTAAT | 3 cut(s) | 3032, 3558, 9590 |
| PsiI | TTATAA | 3 cut(s) | 3948, 8036, 11442 |
| Psp124BI | GAGCTC | 2 cut(s) | 9434, 10542 |
| Psp1406I | AACGTT | 2 cut(s) | 456, 11530 |
| Psp5II | RGGWCCY | 6 cut(s) | 242, 921, 2026, 4358, 5309, 13452 |
| PspEI | GGTNACC | 1 cut(s) | 10057 |
| PspFI | CCCAGC | 3 cut(s) | 1528, 2022, 2769 |
| PspLI | CGTACG | 1 cut(s) | 8047 |
| PspOMI | GGGCCC | 2 cut(s) | 10451, 12824 |
| PspPPI | RGGWCCY | 6 cut(s) | 242, 921, 2026, 4358, 5309, 13452 |
| PspXI | VCTCGAGB | 1 cut(s) | 5679 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3573, 3605 |
| PstI | CTGCAG | 9 cut(s) | 2634, 6232, 8100, 10010, 10567, 12808, 12869, 13962, 13984 |
| PstNI | CAGNNNCTG | 5 cut(s) | 1007, 1055, 2624, 2638, 5771 |
| PsyI | GACNNNGTC | 2 cut(s) | 2339, 11012 |
| PvuII | CAGCTG | 7 cut(s) | 2773, 5109, 7046, 7777, 10229, 10535, 13730 |
| RruI | TCGCGA | 1 cut(s) | 4457 |
| RseI | CAYNNNNRTG | 7 cut(s) | 119, 4538, 5394, 6699, 7791, 8959, 9106 |
| SacI | GAGCTC | 2 cut(s) | 9434, 10542 |
| SalI | GTCGAC | 1 cut(s) | 7354 |
| SapI | GCTCTTC | 2 cut(s) | 1359, 10927 |
| ScaI | AGTACT | 4 cut(s) | 1961, 2561, 4329, 10187 |
| SexAI | ACCWGGT | 3 cut(s) | 3427, 6784, 7593 |
| SfoI | GGCGCC | 3 cut(s) | 160, 231, 1275 |
| Sfr274I | CTCGAG | 1 cut(s) | 5679 |
| SfuI | TTCGAA | 3 cut(s) | 467, 5878, 11893 |
| SlaI | CTCGAG | 1 cut(s) | 5679 |
| SmaI | CCCGGG | 1 cut(s) | 475 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 119, 4538, 5394, 6699, 7791, 8959, 9106 |
| SnaBI | TACGTA | 1 cut(s) | 4103 |
| SpeI | ACTAGT | 3 cut(s) | 6397, 11069, 12871 |
| SphI | GCATGC | 2 cut(s) | 3364, 8947 |
| SseBI | AGGCCT | 2 cut(s) | 335, 6167 |
| SspDI | GGCGCC | 3 cut(s) | 158, 229, 1273 |
| SspI | AATATT | 9 cut(s) | 647, 1378, 1697, 2740, 2804, 3775, 5930, 6175, 10986 |
| SstI | GAGCTC | 2 cut(s) | 9434, 10542 |
| StuI | AGGCCT | 2 cut(s) | 335, 6167 |
| TaqII | GACCGA | 3 cut(s) | 44, 10076, 10696 |
| TauI | GCSGC | 5 cut(s) | 192, 620, 7075, 8828, 11294 |
| TspMI | CCCGGG | 1 cut(s) | 473 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2339, 11012 |
| Van91I | CCANNNNNTGG | 8 cut(s) | 2261, 3431, 3457, 4691, 9806, 10075, 13730, 13946 |
| VneI | GTGCAC | 1 cut(s) | 9099 |
| VspI | ATTAAT | 3 cut(s) | 3032, 3558, 9590 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 7563, 12694 |
| XbaI | TCTAGA | 3 cut(s) | 1258, 2168, 9035 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 10283 |
| XhoI | CTCGAG | 1 cut(s) | 5679 |
| XmaI | CCCGGG | 1 cut(s) | 473 |
| XmiI | GTMKAC | 6 cut(s) | 5776, 5935, 7325, 7355, 9814, 13281 |
| XmnI | GAANNNNTTC | 7 cut(s) | 1470, 4632, 5153, 8114, 10910, 11109, 12228 |
| ZrmI | AGTACT | 4 cut(s) | 1961, 2561, 4329, 10187 |
| Zsp2I | ATGCAT | 6 cut(s) | 2896, 3039, 7659, 11987, 12152, 13341 |