Prokaryotic RING finger family 4
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G23110 |
| fragaria_vesca | FvH4_4g36870 FvH4_4g36870 FvH4_4g36870 |
| malus_domestica | MD16G1001800.v1.1 |
| prunus_persica | Prupe.1G347000_v2.0.a1 |
| pyrus_communis | pycom16g00380 |
| rosa_chinensis | RchiOBHm_Chr4g0446631 |
| rosa_laevigata | RLG00000005643 |
| rosa_multiflora | Rmu_sc0001753.1_g000045 |
| rosa_roxburghii | Rroxscaffold_5G00387020 |
| rosa_rugosa | Rorug04G0373500 |
| rosa_samantha | Rh4AG434700 Rh4BG443800 Rh4CG461100 Rh4DG442600 |
| rosa_wichuraiana | Rw4G037170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 1731, 3936, 5057, 11439 |
| AarI | CACCTGC | 2 cut(s) | 9055, 13984 |
| Acc16I | TGCGCA | 2 cut(s) | 719, 8145 |
| AccB1I | GGYRCC | 6 cut(s) | 146, 217, 1261, 1444, 2345, 3231 |
| AccB7I | CCANNNNNTGG | 5 cut(s) | 2249, 3419, 4679, 9803, 10072 |
| AccBSI | CCGCTC | 1 cut(s) | 7677 |
| AccI | GTMKAC | 5 cut(s) | 2504, 4479, 5764, 9811, 13278 |
| AccII | CGCG | 2 cut(s) | 2542, 3437 |
| AclI | AACGTT | 1 cut(s) | 11527 |
| AcvI | CACGTG | 1 cut(s) | 9566 |
| AcyI | GRCGYC | 5 cut(s) | 147, 218, 255, 741, 1262 |
| AdeI | CACNNNGTG | 2 cut(s) | 3419, 7820 |
| AfeI | AGCGCT | 2 cut(s) | 3384, 5459 |
| AflII | CTTAAG | 2 cut(s) | 4582, 11510 |
| AflIII | ACRYGT | 7 cut(s) | 2357, 3327, 3673, 5377, 9565, 12810, 13042 |
| AgeI | ACCGGT | 2 cut(s) | 332, 13840 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 2020, 7507 |
| AhlI | ACTAGT | 3 cut(s) | 6394, 10310, 12868 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 1413, 1445, 8687, 8719, 8964, 8996, 10587, 10619 |
| AleI | CACNNNNGTG | 1 cut(s) | 2761 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2765, 2797 |
| Alw44I | GTGCAC | 1 cut(s) | 9096 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 995, 1043, 2612, 2626, 5759, 14181 |
| Ama87I | CYCGRG | 5 cut(s) | 95, 461, 5667, 7603, 9393 |
| Aor51HI | AGCGCT | 2 cut(s) | 3384, 5459 |
| ApaI | GGGCCC | 1 cut(s) | 10452 |
| ApaLI | GTGCAC | 1 cut(s) | 9096 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 5408, 5440, 5702, 5734, 14089, 14121 |
| AseI | ATTAAT | 2 cut(s) | 3020, 8967 |
| AsiGI | ACCGGT | 2 cut(s) | 332, 13840 |
| Asp700I | GAANNNNTTC | 8 cut(s) | 1393, 1458, 4620, 5141, 8111, 10907, 11106, 12225 |
| AspA2I | CCTAGG | 1 cut(s) | 3515 |
| AspLEI | GCGC | 8 cut(s) | 149, 220, 720, 1264, 3385, 3439, 5460, 8146 |
| AsuC2I | CCSGG | 6 cut(s) | 74, 462, 463, 565, 7069, 10415 |
| AsuII | TTCGAA | 2 cut(s) | 5866, 11890 |
| AsuNHI | GCTAGC | 1 cut(s) | 3344 |
| AvaI | CYCGRG | 5 cut(s) | 95, 461, 5667, 7603, 9393 |
| AvaII | GGWCC | 9 cut(s) | 909, 2014, 2915, 3405, 3647, 4217, 7882, 10871, 13449 |
| AvrII | CCTAGG | 1 cut(s) | 3515 |
| AxyI | CCTNAGG | 3 cut(s) | 1625, 2712, 6479 |
| BaeGI | GKGCMC | 4 cut(s) | 3236, 5819, 9100, 10452 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 11703, 11736 |
| BalI | TGGCCA | 9 cut(s) | 1336, 2139, 4416, 6358, 8898, 8914, 9788, 10757, 13731 |
| BamHI | GGATCC | 4 cut(s) | 7711, 12311, 12908, 13328 |
| BanI | GGYRCC | 6 cut(s) | 146, 217, 1261, 1444, 2345, 3231 |
| BanII | GRGCYC | 4 cut(s) | 6262, 10452, 10811, 12332 |
| BarI | GAAGNNNNNNTAC | 8 cut(s) | 1446, 1478, 3846, 3878, 6128, 6160, 8352, 8384 |
| BauI | CACGAG | 3 cut(s) | 3150, 6054, 13034 |
| BbrPI | CACGTG | 1 cut(s) | 9566 |
| BciVI | GTATCC | 4 cut(s) | 1145, 3093, 10881, 11704 |
| BclI | TGATCA | 7 cut(s) | 1468, 3121, 3478, 4627, 8872, 11469, 11599 |
| BcnI | CCSGG | 6 cut(s) | 74, 462, 463, 565, 7069, 10415 |
| BcuI | ACTAGT | 3 cut(s) | 6394, 10310, 12868 |
| BfoI | RGCGCY | 5 cut(s) | 150, 221, 1265, 3386, 5461 |
| BfrI | CTTAAG | 2 cut(s) | 4582, 11510 |
| BfuI | GTATCC | 4 cut(s) | 1145, 3093, 10881, 11704 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 7069 |
| BglII | AGATCT | 6 cut(s) | 2527, 4390, 5317, 10927, 11776, 12961 |
| BlnI | CCTAGG | 1 cut(s) | 3515 |
| BlpI | GCTNAGC | 1 cut(s) | 8714 |
| BmcAI | AGTACT | 3 cut(s) | 1949, 2549, 4317 |
| Bme18I | GGWCC | 9 cut(s) | 909, 2014, 2915, 3405, 3647, 4217, 7882, 10871, 13449 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 2020, 7507 |
| BmeT110I | CYCGRG | 5 cut(s) | 95, 461, 5667, 7603, 9393 |
| BmrI | ACTGGG | 8 cut(s) | 3230, 4472, 5141, 6502, 10022, 10294, 10798, 13775 |
| BmtI | GCTAGC | 1 cut(s) | 3348 |
| BmuI | ACTGGG | 8 cut(s) | 3230, 4472, 5141, 6502, 10022, 10294, 10798, 13775 |
| BoxI | GACNNNNGTC | 2 cut(s) | 42, 9365 |
| Bpu10I | CCTNAGC | 4 cut(s) | 7758, 12233, 12323, 13296 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 8714 |
| Bpu14I | TTCGAA | 2 cut(s) | 5866, 11890 |
| BpuEI | CTTGAG | 9 cut(s) | 3215, 3602, 5342, 6062, 8510, 8650, 8996, 10199, 14206 |
| BpuMI | CCSGG | 6 cut(s) | 74, 462, 463, 565, 7069, 10415 |
| Bsa29I | ATCGAT | 2 cut(s) | 9280, 10523 |
| BsaAI | YACGTR | 3 cut(s) | 2459, 3674, 9566 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1774, 4965, 9402, 13608 |
| BsaHI | GRCGYC | 5 cut(s) | 147, 218, 255, 741, 1262 |
| BsaI | GGTCTC | 7 cut(s) | 504, 3229, 5249, 7187, 7609, 13627, 13674 |
| BsaWI | WCCGGW | 6 cut(s) | 16, 332, 576, 4692, 13359, 13840 |
| Bse118I | RCCGGY | 5 cut(s) | 143, 332, 3591, 8596, 13840 |
| Bse21I | CCTNAGG | 3 cut(s) | 1625, 2712, 6479 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1774, 4965, 9402, 13608 |
| BseCI | ATCGAT | 2 cut(s) | 9280, 10523 |
| BseJI | GATNNNNATC | 4 cut(s) | 1774, 4965, 9402, 13608 |
| BseRI | GAGGAG | 5 cut(s) | 284, 3789, 6138, 8729, 13253 |
| BseSI | GKGCMC | 4 cut(s) | 3236, 5819, 9100, 10452 |
| BseX3I | CGGCCG | 1 cut(s) | 13718 |
| BseYI | CCCAGC | 1 cut(s) | 14018 |
| BsgI | GTGCAG | 8 cut(s) | 1654, 3790, 6545, 6995, 7797, 8784, 9061, 9723 |
| Bsh1236I | CGCG | 2 cut(s) | 2542, 3437 |
| Bsh1285I | CGRYCG | 2 cut(s) | 337, 13721 |
| BshNI | GGYRCC | 6 cut(s) | 146, 217, 1261, 1444, 2345, 3231 |
| BshTI | ACCGGT | 2 cut(s) | 332, 13840 |
| BshVI | ATCGAT | 2 cut(s) | 9280, 10523 |
| BsiEI | CGRYCG | 2 cut(s) | 337, 13721 |
| BsiHKCI | CYCGRG | 5 cut(s) | 95, 461, 5667, 7603, 9393 |
| BsiWI | CGTACG | 1 cut(s) | 8044 |
| BsmBI | CGTCTC | 3 cut(s) | 167, 2978, 4799 |
| Bso31I | GGTCTC | 7 cut(s) | 504, 3229, 5249, 7187, 7609, 13627, 13674 |
| BsoBI | CYCGRG | 5 cut(s) | 95, 461, 5667, 7603, 9393 |
| Bsp119I | TTCGAA | 2 cut(s) | 5866, 11890 |
| Bsp120I | GGGCCC | 1 cut(s) | 10448 |
| Bsp1407I | TGTACA | 4 cut(s) | 946, 1138, 7404, 8317 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 8714 |
| Bsp19I | CCATGG | 7 cut(s) | 1358, 6967, 7571, 8279, 8669, 8909, 12904 |
| BspDI | ATCGAT | 2 cut(s) | 9280, 10523 |
| BspFNI | CGCG | 2 cut(s) | 2542, 3437 |
| BspHI | TCATGA | 4 cut(s) | 3970, 6702, 6793, 9147 |
| BspMAI | CTGCAG | 9 cut(s) | 2622, 6229, 8571, 8824, 10564, 12805, 12866, 13959, 13981 |
| BspOI | GCTAGC | 1 cut(s) | 3348 |
| BspQI | GCTCTTC | 4 cut(s) | 1347, 10901, 10924, 14251 |
| BspT104I | TTCGAA | 2 cut(s) | 5866, 11890 |
| BspT107I | GGYRCC | 6 cut(s) | 146, 217, 1261, 1444, 2345, 3231 |
| BspTI | CTTAAG | 2 cut(s) | 4582, 11510 |
| BspTNI | GGTCTC | 7 cut(s) | 504, 3229, 5249, 7187, 7609, 13627, 13674 |
| BsrBI | CCGCTC | 1 cut(s) | 7677 |
| BsrFI | RCCGGY | 5 cut(s) | 143, 332, 3591, 8596, 13840 |
| BsrGI | TGTACA | 4 cut(s) | 946, 1138, 7404, 8317 |
| BssAI | RCCGGY | 5 cut(s) | 143, 332, 3591, 8596, 13840 |
| BssNAI | GTATAC | 1 cut(s) | 9812 |
| BssNI | GRCGYC | 5 cut(s) | 147, 218, 255, 741, 1262 |
| BssSI | CACGAG | 3 cut(s) | 3150, 6054, 13034 |
| Bst1107I | GTATAC | 1 cut(s) | 9812 |
| Bst2BI | CACGAG | 3 cut(s) | 3150, 6054, 13034 |
| BstACI | GRCGYC | 5 cut(s) | 147, 218, 255, 741, 1262 |
| BstAFI | CTTAAG | 2 cut(s) | 4582, 11510 |
| BstAUI | TGTACA | 4 cut(s) | 946, 1138, 7404, 8317 |
| BstBAI | YACGTR | 3 cut(s) | 2459, 3674, 9566 |
| BstBI | TTCGAA | 2 cut(s) | 5866, 11890 |
| BstEII | GGTNACC | 1 cut(s) | 10054 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 440, 7560, 12691 |
| BstFNI | CGCG | 2 cut(s) | 2542, 3437 |
| BstH2I | RGCGCY | 5 cut(s) | 150, 221, 1265, 3386, 5461 |
| BstHHI | GCGC | 8 cut(s) | 149, 220, 720, 1264, 3385, 3439, 5460, 8146 |
| BstMCI | CGRYCG | 2 cut(s) | 337, 13721 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 42, 9365 |
| BstPI | GGTNACC | 1 cut(s) | 10054 |
| BstSLI | GKGCMC | 4 cut(s) | 3236, 5819, 9100, 10452 |
| BstSNI | TACGTA | 1 cut(s) | 2459 |
| BstUI | CGCG | 2 cut(s) | 2542, 3437 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 2930, 3658, 10280, 11959, 11998 |
| BstZ17I | GTATAC | 1 cut(s) | 9812 |
| BstZI | CGGCCG | 1 cut(s) | 13718 |
| Bsu15I | ATCGAT | 2 cut(s) | 9280, 10523 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1625, 2712, 6479 |
| BsuI | GTATCC | 4 cut(s) | 1145, 3093, 10881, 11704 |
| BsuTUI | ATCGAT | 2 cut(s) | 9280, 10523 |
| BtgZI | GCGATG | 2 cut(s) | 12667, 13835 |
| BtsI | GCAGTG | 5 cut(s) | 828, 1819, 5348, 7089, 11176 |
| CaiI | CAGNNNCTG | 6 cut(s) | 995, 1043, 2612, 2626, 5759, 14181 |
| CciI | TCATGA | 4 cut(s) | 3970, 6702, 6793, 9147 |
| CfoI | GCGC | 8 cut(s) | 149, 220, 720, 1264, 3385, 3439, 5460, 8146 |
| Cfr10I | RCCGGY | 5 cut(s) | 143, 332, 3591, 8596, 13840 |
| Cfr9I | CCCGGG | 1 cut(s) | 461 |
| ClaI | ATCGAT | 2 cut(s) | 9280, 10523 |
| CseI | GACGC | 3 cut(s) | 263, 749, 3815 |
| CsiI | ACCWGGT | 3 cut(s) | 3415, 6781, 7590 |
| CspAI | ACCGGT | 2 cut(s) | 332, 13840 |
| DinI | GGCGCC | 3 cut(s) | 148, 219, 1263 |
| DraI | TTTAAA | 2 cut(s) | 11733, 12651 |
| DraIII | CACNNNGTG | 2 cut(s) | 3419, 7820 |
| DriI | GACNNNNNGTC | 2 cut(s) | 2020, 7507 |
| EagI | CGGCCG | 1 cut(s) | 13718 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 2020, 7507 |
| EciI | GGCGGA | 1 cut(s) | 3288 |
| EclXI | CGGCCG | 1 cut(s) | 13718 |
| Eco105I | TACGTA | 1 cut(s) | 2459 |
| Eco147I | AGGCCT | 3 cut(s) | 323, 2304, 6164 |
| Eco24I | GRGCYC | 4 cut(s) | 6262, 10452, 10811, 12332 |
| Eco31I | GGTCTC | 7 cut(s) | 504, 3229, 5249, 7187, 7609, 13627, 13674 |
| Eco32I | GATATC | 3 cut(s) | 5239, 7795, 12731 |
| Eco47I | GGWCC | 9 cut(s) | 909, 2014, 2915, 3405, 3647, 4217, 7882, 10871, 13449 |
| Eco47III | AGCGCT | 2 cut(s) | 3384, 5459 |
| Eco52I | CGGCCG | 1 cut(s) | 13718 |
| Eco72I | CACGTG | 1 cut(s) | 9566 |
| Eco81I | CCTNAGG | 3 cut(s) | 1625, 2712, 6479 |
| Eco88I | CYCGRG | 5 cut(s) | 95, 461, 5667, 7603, 9393 |
| Eco91I | GGTNACC | 1 cut(s) | 10054 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 440, 7560, 12691 |
| EcoO109I | RGGNCCY | 9 cut(s) | 230, 909, 1504, 2014, 4346, 5297, 10448, 10449, 13449 |
| EcoO65I | GGTNACC | 1 cut(s) | 10054 |
| EcoRI | GAATTC | 8 cut(s) | 3734, 4224, 6893, 7357, 7827, 8015, 10609, 12481 |
| EcoRV | GATATC | 3 cut(s) | 5239, 7795, 12731 |
| EcoT22I | ATGCAT | 6 cut(s) | 3027, 6630, 7656, 11984, 12149, 13338 |
| EcoT38I | GRGCYC | 4 cut(s) | 6262, 10452, 10811, 12332 |
| EgeI | GGCGCC | 3 cut(s) | 148, 219, 1263 |
| EheI | GGCGCC | 3 cut(s) | 148, 219, 1263 |
| Esp3I | CGTCTC | 3 cut(s) | 167, 2978, 4799 |
| FauI | CCCGC | 2 cut(s) | 5604, 12587 |
| FauNDI | CATATG | 4 cut(s) | 5514, 8455, 10764, 11088 |
| FbaI | TGATCA | 7 cut(s) | 1468, 3121, 3478, 4627, 8872, 11469, 11599 |
| FblI | GTMKAC | 5 cut(s) | 2504, 4479, 5764, 9811, 13278 |
| FriOI | GRGCYC | 4 cut(s) | 6262, 10452, 10811, 12332 |
| FseI | GGCCGGCC | 1 cut(s) | 8600 |
| FspI | TGCGCA | 2 cut(s) | 719, 8145 |
| GlaI | GCGC | 8 cut(s) | 148, 219, 719, 1263, 3384, 3438, 5459, 8145 |
| GsaI | CCCAGC | 1 cut(s) | 14022 |
| HaeII | RGCGCY | 5 cut(s) | 150, 221, 1265, 3386, 5461 |
| HgaI | GACGC | 3 cut(s) | 263, 749, 3815 |
| HhaI | GCGC | 8 cut(s) | 149, 220, 720, 1264, 3385, 3439, 5460, 8146 |
| Hin1I | GRCGYC | 5 cut(s) | 147, 218, 255, 741, 1262 |
| Hin6I | GCGC | 8 cut(s) | 147, 218, 718, 1262, 3383, 3437, 5458, 8144 |
| HinP1I | GCGC | 8 cut(s) | 147, 218, 718, 1262, 3383, 3437, 5458, 8144 |
| HincII | GTYRAC | 8 cut(s) | 55, 4894, 6278, 7353, 7471, 8124, 10246, 14200 |
| HindII | GTYRAC | 8 cut(s) | 55, 4894, 6278, 7353, 7471, 8124, 10246, 14200 |
| Hpy99I | CGWCG | 5 cut(s) | 158, 257, 388, 1179, 3809 |
| HpyCH4IV | ACGT | 9 cut(s) | 1615, 2458, 3673, 4502, 4808, 9565, 11527, 12736, 13416 |
| HpySE526I | ACGT | 9 cut(s) | 1615, 2458, 3673, 4502, 4808, 9565, 11527, 12736, 13416 |
| Hsp92I | GRCGYC | 5 cut(s) | 147, 218, 255, 741, 1262 |
| HspAI | GCGC | 8 cut(s) | 147, 218, 718, 1262, 3383, 3437, 5458, 8144 |
| KasI | GGCGCC | 3 cut(s) | 146, 217, 1261 |
| KflI | GGGWCCC | 3 cut(s) | 909, 2014, 13449 |
| KroI | GCCGGC | 2 cut(s) | 143, 8596 |
| KroNI | GCCGGC | 2 cut(s) | 145, 8598 |
| Ksp22I | TGATCA | 7 cut(s) | 1468, 3121, 3478, 4627, 8872, 11469, 11599 |
| LguI | GCTCTTC | 4 cut(s) | 1347, 10901, 10924, 14251 |
| MabI | ACCWGGT | 3 cut(s) | 3415, 6781, 7590 |
| MaeII | ACGT | 9 cut(s) | 1615, 2458, 3673, 4502, 4808, 9565, 11527, 12736, 13416 |
| MbiI | CCGCTC | 1 cut(s) | 7677 |
| MfeI | CAATTG | 9 cut(s) | 5790, 6379, 6540, 9819, 10155, 10368, 11465, 12826, 13425 |
| MlsI | TGGCCA | 9 cut(s) | 1336, 2139, 4416, 6358, 8898, 8914, 9788, 10757, 13731 |
| MluNI | TGGCCA | 9 cut(s) | 1336, 2139, 4416, 6358, 8898, 8914, 9788, 10757, 13731 |
| Mly113I | GGCGCC | 3 cut(s) | 147, 218, 1262 |
| MmeI | TCCRAC | 8 cut(s) | 216, 328, 1411, 1659, 3284, 8348, 10580, 11063 |
| Mox20I | TGGCCA | 9 cut(s) | 1336, 2139, 4416, 6358, 8898, 8914, 9788, 10757, 13731 |
| Mph1103I | ATGCAT | 6 cut(s) | 3027, 6630, 7656, 11984, 12149, 13338 |
| MroNI | GCCGGC | 2 cut(s) | 143, 8596 |
| MroXI | GAANNNNTTC | 8 cut(s) | 1393, 1458, 4620, 5141, 8111, 10907, 11106, 12225 |
| MscI | TGGCCA | 9 cut(s) | 1336, 2139, 4416, 6358, 8898, 8914, 9788, 10757, 13731 |
| MslI | CAYNNNNRTG | 7 cut(s) | 725, 2761, 4526, 5382, 8213, 8956, 9103 |
| Msp20I | TGGCCA | 9 cut(s) | 1336, 2139, 4416, 6358, 8898, 8914, 9788, 10757, 13731 |
| MspA1I | CMGCKG | 5 cut(s) | 2761, 5097, 10532, 11717, 13727 |
| MspCI | CTTAAG | 2 cut(s) | 4582, 11510 |
| MunI | CAATTG | 9 cut(s) | 5790, 6379, 6540, 9819, 10155, 10368, 11465, 12826, 13425 |
| MvnI | CGCG | 2 cut(s) | 2542, 3437 |
| NaeI | GCCGGC | 2 cut(s) | 145, 8598 |
| NarI | GGCGCC | 3 cut(s) | 147, 218, 1262 |
| NciI | CCSGG | 6 cut(s) | 74, 462, 463, 565, 7069, 10415 |
| NcoI | CCATGG | 7 cut(s) | 1358, 6967, 7571, 8279, 8669, 8909, 12904 |
| NdeI | CATATG | 4 cut(s) | 5514, 8455, 10764, 11088 |
| NgoMIV | GCCGGC | 2 cut(s) | 143, 8596 |
| NheI | GCTAGC | 1 cut(s) | 3344 |
| NmeAIII | GCCGAG | 4 cut(s) | 783, 8533, 9789, 13991 |
| NsbI | TGCGCA | 2 cut(s) | 719, 8145 |
| NsiI | ATGCAT | 6 cut(s) | 3027, 6630, 7656, 11984, 12149, 13338 |
| NspV | TTCGAA | 2 cut(s) | 5866, 11890 |
| OliI | CACNNNNGTG | 1 cut(s) | 2761 |
| PaeI | GCATGC | 2 cut(s) | 3352, 8944 |
| PaeR7I | CTCGAG | 1 cut(s) | 5667 |
| PagI | TCATGA | 4 cut(s) | 3970, 6702, 6793, 9147 |
| PaqCI | CACCTGC | 2 cut(s) | 9055, 13984 |
| PasI | CCCWGGG | 2 cut(s) | 5181, 10072 |
| PceI | AGGCCT | 3 cut(s) | 323, 2304, 6164 |
| PciI | ACATGT | 5 cut(s) | 2357, 3327, 5377, 12810, 13042 |
| PciSI | GCTCTTC | 4 cut(s) | 1347, 10901, 10924, 14251 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 11887 |
| PdiI | GCCGGC | 2 cut(s) | 145, 8598 |
| PdmI | GAANNNNTTC | 8 cut(s) | 1393, 1458, 4620, 5141, 8111, 10907, 11106, 12225 |
| Pfl23II | CGTACG | 1 cut(s) | 8044 |
| PflFI | GACNNNGTC | 3 cut(s) | 4373, 11009, 12415 |
| PflMI | CCANNNNNTGG | 5 cut(s) | 2249, 3419, 4679, 9803, 10072 |
| PfoI | TCCNGGA | 7 cut(s) | 72, 563, 4678, 6118, 6884, 11857, 13489 |
| PinAI | ACCGGT | 2 cut(s) | 332, 13840 |
| PluTI | GGCGCC | 3 cut(s) | 150, 221, 1265 |
| PmaCI | CACGTG | 1 cut(s) | 9566 |
| PmlI | CACGTG | 1 cut(s) | 9566 |
| Ppu21I | YACGTR | 3 cut(s) | 2459, 3674, 9566 |
| PpuMI | RGGWCCY | 3 cut(s) | 909, 2014, 13449 |
| PscI | ACATGT | 5 cut(s) | 2357, 3327, 5377, 12810, 13042 |
| PshAI | GACNNNNGTC | 2 cut(s) | 42, 9365 |
| PshBI | ATTAAT | 2 cut(s) | 3020, 8967 |
| PsiI | TTATAA | 4 cut(s) | 1731, 3936, 5057, 11439 |
| Psp1406I | AACGTT | 1 cut(s) | 11527 |
| Psp5II | RGGWCCY | 3 cut(s) | 909, 2014, 13449 |
| PspCI | CACGTG | 1 cut(s) | 9566 |
| PspEI | GGTNACC | 1 cut(s) | 10054 |
| PspFI | CCCAGC | 1 cut(s) | 14018 |
| PspLI | CGTACG | 1 cut(s) | 8044 |
| PspOMI | GGGCCC | 1 cut(s) | 10448 |
| PspPPI | RGGWCCY | 3 cut(s) | 909, 2014, 13449 |
| PstI | CTGCAG | 9 cut(s) | 2622, 6229, 8571, 8824, 10564, 12805, 12866, 13959, 13981 |
| PstNI | CAGNNNCTG | 6 cut(s) | 995, 1043, 2612, 2626, 5759, 14181 |
| PsyI | GACNNNGTC | 3 cut(s) | 4373, 11009, 12415 |
| PvuII | CAGCTG | 4 cut(s) | 2761, 5097, 10532, 13727 |
| RigI | GGCCGGCC | 1 cut(s) | 8600 |
| RseI | CAYNNNNRTG | 7 cut(s) | 725, 2761, 4526, 5382, 8213, 8956, 9103 |
| SapI | GCTCTTC | 4 cut(s) | 1347, 10901, 10924, 14251 |
| ScaI | AGTACT | 3 cut(s) | 1949, 2549, 4317 |
| SexAI | ACCWGGT | 3 cut(s) | 3415, 6781, 7590 |
| SfoI | GGCGCC | 3 cut(s) | 148, 219, 1263 |
| Sfr274I | CTCGAG | 1 cut(s) | 5667 |
| SfuI | TTCGAA | 2 cut(s) | 5866, 11890 |
| SinI | GGWCC | 9 cut(s) | 909, 2014, 2915, 3405, 3647, 4217, 7882, 10871, 13449 |
| SlaI | CTCGAG | 1 cut(s) | 5667 |
| SmaI | CCCGGG | 1 cut(s) | 463 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 725, 2761, 4526, 5382, 8213, 8956, 9103 |
| SnaBI | TACGTA | 1 cut(s) | 2459 |
| SpeI | ACTAGT | 3 cut(s) | 6394, 10310, 12868 |
| SphI | GCATGC | 2 cut(s) | 3352, 8944 |
| SseBI | AGGCCT | 3 cut(s) | 323, 2304, 6164 |
| SspDI | GGCGCC | 3 cut(s) | 146, 217, 1261 |
| SspI | AATATT | 8 cut(s) | 635, 1366, 1685, 2792, 3763, 5918, 6172, 6363 |
| StuI | AGGCCT | 3 cut(s) | 323, 2304, 6164 |
| TaiI | ACGT | 9 cut(s) | 1618, 2461, 3676, 4505, 4811, 9568, 11530, 12739, 13419 |
| TaqII | GACCGA | 2 cut(s) | 32, 10073 |
| TauI | GCSGC | 5 cut(s) | 180, 3437, 7043, 7677, 13939 |
| TspGWI | ACGGA | 4 cut(s) | 2734, 6842, 8403, 12746 |
| TspMI | CCCGGG | 1 cut(s) | 461 |
| Tth111I | GACNNNGTC | 3 cut(s) | 4373, 11009, 12415 |
| Van91I | CCANNNNNTGG | 5 cut(s) | 2249, 3419, 4679, 9803, 10072 |
| Vha464I | CTTAAG | 2 cut(s) | 4582, 11510 |
| VneI | GTGCAC | 1 cut(s) | 9096 |
| VpaK11BI | GGWCC | 9 cut(s) | 909, 2014, 2915, 3405, 3647, 4217, 7882, 10871, 13449 |
| VspI | ATTAAT | 2 cut(s) | 3020, 8967 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 440, 7560, 12691 |
| XbaI | TCTAGA | 4 cut(s) | 31, 1246, 2156, 9032 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 3267, 7591, 10280 |
| XhoI | CTCGAG | 1 cut(s) | 5667 |
| XmaI | CCCGGG | 1 cut(s) | 461 |
| XmaJI | CCTAGG | 1 cut(s) | 3515 |
| XmiI | GTMKAC | 5 cut(s) | 2504, 4479, 5764, 9811, 13278 |
| XmnI | GAANNNNTTC | 8 cut(s) | 1393, 1458, 4620, 5141, 8111, 10907, 11106, 12225 |
| ZrmI | AGTACT | 3 cut(s) | 1949, 2549, 4317 |
| Zsp2I | ATGCAT | 6 cut(s) | 3027, 6630, 7656, 11984, 12149, 13338 |