Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008388

Physical Location & Seq

Genomic Coordinates Reverse (-)

401937 .. 404641

Gene Structure 2705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g00690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGCTAGTTCTGAGAGCAACAACCAACATGATGCTCAGGCATTTCACTCAGCCATCCATGTCCTTTTTACCGTCAAGCCCCACCGCTCTGCTCCGCTCCACCGCCGGAATCAGCATCCGGTGCGCCGCGTCCAGCTCCGGCGTCGGCGGGAACAAGGTCTCCGCTCGGCTCTCTCAGGTCAACCAGCTCTTGCGAGAAGCCGAGGAGCGTGCTTCCTCCAACGATGGCCTCCCCGCACCTAAAATCACGTTAGATCATGTAACTGTGAGTTTTGCAAGAAGTGGAGGACCTGGAGGACAGAATGTGAACAAATTGAACACCAAAGTGGACATGCGGTTCAATGTTAAAAATGCGTATTGGCTGAGTGACAGGATCAAGGAGAGGATTTTGCAAATGGAGAAGAATCGAATCAACAAGGATGGAGAGCTTGTGATTTCTTCAACCAGGACTCGTACACAGAAGGGTAACATTGAAGATGCTCTGGAGAAACTTCAGGCAATTATTGATGCTGCTTCATATGTTCCACCTCCTCCCTCAGAAGAGCAAAAGAAGAAGATCGCTAAAATGGCTGCTATTGGAGAACAGAAACGCCTCAAAAGCAAGAAGGTACTTTCAGACAAGAAGGCATTTAGAAGAACTCGTGACAGTTGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0003824 GO:0004045 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006414 GO:0006415 GO:0006417 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0015934 GO:0016043 GO:0016150 GO:0016787 GO:0016788 GO:0019222 GO:0019538 GO:0022411 GO:0031323 GO:0031326 GO:0031974 GO:0032268 GO:0032543 GO:0032984 GO:0032991 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0052689 GO:0060255 GO:0065007 GO:0070013 GO:0070126 GO:0071704 GO:0071840 GO:0072344 GO:0080090 GO:0097159 GO:0098798 GO:0140053 GO:0140098 GO:0140101 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RF-1

Protein Analysis

220

Amino Acids

24.21

Weight (kDa)

10.3

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RF-1	PF00472	82 - 204	6.8e-16	RF-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62850 AT1G62850 AT1G62850
fragaria_vesca	FvH4_5g00690 FvH4_5g00690 FvH4_5g00690
malus_domestica	MD04G1079400.v1.1
prunus_persica	Prupe.5G079700_v2.0.a1 Prupe.5G079700_v2.0.a1 Prupe.5G079700_v2.0.a1
pyrus_communis	pycom04g07120
rosa_chinensis	RchiOBHm_Chr7g0201521
rosa_laevigata	RLG00000003665
rosa_multiflora	Rmu_sc0002046.1_g000001 Rmu_sc0017656.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255250
rosa_rugosa	Rorug07G0064600 Rorug07G0064700
rosa_samantha	Rh7AG191200 Rh7BG193500 Rh7CG202400 Rh7DG196400
rosa_wichuraiana	Rw7G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	89, 99, 167
AccII	CGCG	1 cut(s)	131
AciI	CCGC	8 cut(s)	87, 97, 105, 129, 150, 165, 237, 337
AclWI	GGATC	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	2 cut(s)	457, 612
AgsI	TTSAA	4 cut(s)	319, 343, 444, 476
AjnI	CCWGG	2 cut(s)	292, 446
AleI	CACNNNNGTG	1 cut(s)	326
AloI	GAACNNNNNNTCC	4 cut(s)	146, 178, 323, 355
AluBI	AGCT	3 cut(s)	138, 190, 430
AluI	AGCT	3 cut(s)	138, 190, 430
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	383
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	512, 572
AspLEI	GCGC	2 cut(s)	7, 128
AspS9I	GGNCC	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	290
BauI	CACGAG	1 cut(s)	642
BbvI	GCAGC	2 cut(s)	499, 559
BccI	CCATC	3 cut(s)	64, 221, 416
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	2 cut(s)	294, 448
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	8
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	3 cut(s)	129, 513, 573
BlsI	GCNGC	3 cut(s)	130, 514, 574
Bme1390I	CCNGG	2 cut(s)	294, 448
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmrFI	CCNGG	2 cut(s)	294, 448
BmsI	GCATC	4 cut(s)	24, 126, 469, 499
BpmI	CTGGAG	2 cut(s)	315, 506
Bpu10I	CCTNAGC	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 417, 447
BseBI	CCWGG	2 cut(s)	294, 448
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	3 cut(s)	56, 117, 427
BseMII	CTCAG	6 cut(s)	5, 52, 65, 191, 356, 552
BseRI	GAGGAG	2 cut(s)	221, 522
BseXI	GCAGC	2 cut(s)	499, 559
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	231
BsiSI	CCGG	3 cut(s)	108, 121, 141
BsmAI	GTCTC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	166
Bsp143I	GATC	3 cut(s)	256, 375, 558
BspACI	CCGC	8 cut(s)	87, 97, 105, 129, 150, 165, 237, 337
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	6 cut(s)	6, 51, 64, 190, 357, 551
BspFNI	CGCG	1 cut(s)	131
BspPI	GGATC	1 cut(s)	383
BspQI	GCTCTTC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	166
BsrBI	CCGCTC	3 cut(s)	89, 99, 167
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	3 cut(s)	256, 375, 558
BssNI	GRCGYC	1 cut(s)	144
BssSI	CACGAG	1 cut(s)	642
Bst2BI	CACGAG	1 cut(s)	642
Bst2UI	CCWGG	2 cut(s)	294, 448
Bst4CI	ACNGT	3 cut(s)	75, 268, 650
Bst6I	CTCTTC	1 cut(s)	537
BstACI	GRCGYC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	6 cut(s)	14, 38, 51, 177, 365, 538
BstF5I	GGATG	3 cut(s)	56, 117, 427
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 128
BstKTI	GATC	3 cut(s)	259, 378, 561
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	3 cut(s)	256, 375, 558
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 569, 600
BstNI	CCWGG	2 cut(s)	294, 448
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	292, 446
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	499, 559
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	3 cut(s)	56, 117, 427
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	2 cut(s)	7, 128
Cfr13I	GGNCC	1 cut(s)	290
CseI	GACGC	2 cut(s)	120, 133
Csp6I	GTAC	2 cut(s)	456, 611
CviAII	CATG	4 cut(s)	31, 61, 260, 334
CviQI	GTAC	2 cut(s)	456, 611
DdeI	CTNAG	6 cut(s)	14, 38, 51, 177, 365, 538
DpnI	GATC	3 cut(s)	258, 377, 560
DpnII	GATC	3 cut(s)	256, 375, 558
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	292, 446
FaeI	CATG	4 cut(s)	34, 64, 263, 337
FaiI	YATR	6 cut(s)	32, 62, 261, 335, 520, 522
FatI	CATG	4 cut(s)	30, 60, 259, 333
FauI	CCCGC	2 cut(s)	143, 244
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	3 cut(s)	129, 513, 573
FokI	GGATG	3 cut(s)	43, 104, 434
Fsp4HI	GCNGC	3 cut(s)	129, 513, 573
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	2 cut(s)	6, 127
GluI	GCNGC	3 cut(s)	129, 513, 573
GsuI	CTGGAG	2 cut(s)	315, 506
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	3 cut(s)	108, 121, 141
HgaI	GACGC	2 cut(s)	120, 133
HhaI	GCGC	2 cut(s)	7, 128
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	4 cut(s)	34, 64, 263, 337
Hin6I	GCGC	2 cut(s)	5, 126
HinP1I	GCGC	2 cut(s)	5, 126
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	4 cut(s)	111, 406, 411, 451
HpaII	CCGG	3 cut(s)	108, 121, 141
Hpy166II	GTNNAC	4 cut(s)	184, 310, 331, 458
Hpy188I	TCNGA	3 cut(s)	15, 541, 619
Hpy188III	TCNNGA	2 cut(s)	485, 644
Hpy8I	GTNNAC	4 cut(s)	184, 310, 331, 458
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	3 cut(s)	457, 601, 619
HpyCH4III	ACNGT	3 cut(s)	75, 268, 650
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	278, 394
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 569, 600
HpyF3I	CTNAG	6 cut(s)	14, 38, 51, 177, 365, 538
HpySE526I	ACGT	1 cut(s)	251
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	4 cut(s)	34, 64, 263, 337
HspAI	GCGC	2 cut(s)	5, 126
Kzo9I	GATC	3 cut(s)	256, 375, 558
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	4 cut(s)	99, 104, 143, 208
Lsp1109I	GCAGC	2 cut(s)	499, 559
LweI	GCATC	4 cut(s)	24, 126, 469, 499
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	4 cut(s)	262, 368, 467, 644
MalI	GATC	3 cut(s)	258, 377, 560
MbiI	CCGCTC	3 cut(s)	89, 99, 167
MboI	GATC	3 cut(s)	256, 375, 558
MboII	GAAGA	7 cut(s)	415, 432, 488, 554, 565, 568, 648
MluCI	AATT	2 cut(s)	314, 501
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	246
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	1 cut(s)	326
MspI	CCGG	3 cut(s)	108, 121, 141
MspR9I	CCNGG	2 cut(s)	294, 448
MvaI	CCWGG	2 cut(s)	294, 448
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	3 cut(s)	123, 569, 600
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	3 cut(s)	256, 375, 558
NlaIII	CATG	4 cut(s)	34, 64, 263, 337
NmeAIII	GCCGAG	2 cut(s)	148, 229
NmuCI	GTSAC	2 cut(s)	368, 644
NspI	RCATGY	1 cut(s)	337
OliI	CACNNNNGTG	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	537
PfeI	GAWTC	3 cut(s)	111, 406, 411
PkrI	GCNGC	3 cut(s)	130, 514, 574
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PpuMI	RGGWCCY	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	290
Psp6I	CCWGG	2 cut(s)	292, 446
PspGI	CCWGG	2 cut(s)	292, 446
PspPI	GGNCC	1 cut(s)	290
PspPPI	RGGWCCY	1 cut(s)	290
RsaI	GTAC	2 cut(s)	457, 612
RsaNI	GTAC	2 cut(s)	456, 611
RseI	CAYNNNNRTG	1 cut(s)	326
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	3 cut(s)	129, 513, 573
Sau3AI	GATC	3 cut(s)	256, 375, 558
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	294, 448
SfaNI	GCATC	4 cut(s)	24, 126, 469, 499
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	326
Sse9I	AATT	2 cut(s)	314, 501
SsiI	CCGC	8 cut(s)	87, 97, 105, 129, 150, 165, 237, 337
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	292, 446
TaaI	ACNGT	3 cut(s)	75, 268, 650
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	409
TasI	AATT	2 cut(s)	314, 501
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	3 cut(s)	111, 406, 411
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TseFI	GTSAC	2 cut(s)	368, 644
TseI	GCWGC	2 cut(s)	512, 572
Tsp45I	GTSAC	2 cut(s)	368, 644
TspDTI	ATGAA	1 cut(s)	507
VpaK11BI	GGWCC	1 cut(s)	290
XceI	RCATGY	1 cut(s)	337
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.