Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008388

Physical Location & Seq

Genomic Coordinates Forward (+)

7499195 .. 7501702

Gene Structure 2508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g07120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCGGTTCTGAGAACCACAACGAACATGATCCTCAGGCACGTCTTCCGACCATCCTTGTCATTTCCTTCATCAATCCCTACGATTGTACTCCGCTCCTCCAATGGAGGAACCGGAATCAGAATCGGAATCGGCCGTGTCTGTTGCGCCGCGTCGGACTCCGGCGGCAGCGGGAACAAGGTGTCGGCTCGGCTCTCGCAGGTCAACCAGCTCCTGCAAGCGGCCGAGGAGCGAGCTCTCTCCGCTGACAAAAATCCCCCTCCTAAAATCACGCTAGACCATGTAACTGTTAGTTTTGCCAGAAGTGGAGGGCCTGGAGGGCAGAATGTTAACAAAGTGAACACCAAGGTGGACATGCGCTTCAATGTAGAAAAGGCGTATTGGCTAAGTGAATGGGTCAGGGAGAGGATTTTGCAAATGGAGAAGAATCGGATCAACAAAGATGGGGAGCTTGTGATTTCTTCAACTAAGACTCGGACGCAAAAGGGTAATATTGAAGATGCTCTGGAGAAATTTCAGGCGATTATTGATGCTGCTTCTTATGTCCCACCTCCTCCCTCGGAAGAGCAAAAGAAGAAGATAGCTAAAATGGCTGCCATTGGGGAACAAAAACGGCTTAAGAGCAAGAAGGTTCTTTCGGACAAAAAAGCATTTAGAAGAAGCCGAGACAGTTGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0003824 GO:0004045 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006414 GO:0006415 GO:0006417 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0015934 GO:0016043 GO:0016150 GO:0016787 GO:0016788 GO:0019222 GO:0019538 GO:0022411 GO:0031323 GO:0031326 GO:0031974 GO:0032268 GO:0032543 GO:0032984 GO:0032991 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0052689 GO:0060255 GO:0065007 GO:0070013 GO:0070126 GO:0071704 GO:0071840 GO:0072344 GO:0080090 GO:0097159 GO:0098798 GO:0140053 GO:0140098 GO:0140101 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RF-1

Protein Analysis

227

Amino Acids

24.95

Weight (kDa)

10.18

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RF-1	PF00472	89 - 211	7e-16	RF-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62850 AT1G62850 AT1G62850
fragaria_vesca	FvH4_5g00690 FvH4_5g00690 FvH4_5g00690
malus_domestica	MD04G1079400.v1.1
prunus_persica	Prupe.5G079700_v2.0.a1 Prupe.5G079700_v2.0.a1 Prupe.5G079700_v2.0.a1
pyrus_communis	pycom04g07120
rosa_chinensis	RchiOBHm_Chr7g0201521
rosa_laevigata	RLG00000003665
rosa_multiflora	Rmu_sc0002046.1_g000001 Rmu_sc0017656.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255250
rosa_rugosa	Rorug07G0064600 Rorug07G0064700
rosa_samantha	Rh7AG191200 Rh7BG193500 Rh7CG202400 Rh7DG196400
rosa_wichuraiana	Rw7G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AccBSI	CCGCTC	1 cut(s)	96
AccII	CGCG	1 cut(s)	152
AciI	CCGC	7 cut(s)	5, 94, 150, 165, 171, 221, 243
AclWI	GGATC	2 cut(s)	25, 440
AcoI	YGGCCR	2 cut(s)	133, 222
AcsI	RAATTY	1 cut(s)	512
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	220
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	364, 465, 497
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	313
AleI	CACNNNNGTG	1 cut(s)	347
AluBI	AGCT	4 cut(s)	211, 236, 451, 584
AluI	AGCT	4 cut(s)	211, 236, 451, 584
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	2 cut(s)	25, 440
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	3 cut(s)	133, 222, 311
ApeKI	GCWGC	3 cut(s)	168, 533, 593
ApoI	RAATTY	1 cut(s)	512
AspLEI	GCGC	2 cut(s)	149, 360
AspS9I	GGNCC	1 cut(s)	311
AxyI	CCTNAGG	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	180, 520, 580
BccI	CCATC	2 cut(s)	61, 437
BceAI	ACGGC	2 cut(s)	120, 629
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	1 cut(s)	275
BfrI	CTTAAG	1 cut(s)	617
BfuAI	ACCTGC	1 cut(s)	190
BglI	GCCNNNNNGGC	1 cut(s)	319
BisI	GCNGC	6 cut(s)	150, 166, 169, 222, 534, 594
BlsI	GCNGC	6 cut(s)	151, 167, 170, 223, 535, 595
Bme1390I	CCNGG	1 cut(s)	315
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	490, 520
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	2 cut(s)	336, 527
BsaJI	CCNNGG	3 cut(s)	225, 345, 558
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse21I	CCTNAGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	225, 345, 558
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	49
BseRI	GAGGAG	3 cut(s)	88, 242, 543
BseX3I	CGGCCG	2 cut(s)	133, 222
BseXI	GCAGC	3 cut(s)	180, 520, 580
Bsh1236I	CGCG	1 cut(s)	152
Bsh1285I	CGRYCG	2 cut(s)	136, 225
BshFI	GGCC	3 cut(s)	135, 224, 313
BsiEI	CGRYCG	2 cut(s)	136, 225
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	2 cut(s)	114, 162
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	530
BsnI	GGCC	3 cut(s)	135, 224, 313
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	30, 432
BspACI	CCGC	7 cut(s)	5, 94, 150, 165, 171, 221, 243
BspANI	GGCC	3 cut(s)	135, 224, 313
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	2 cut(s)	25, 440
BspQI	GCTCTTC	1 cut(s)	558
BspTI	CTTAAG	1 cut(s)	617
BsrBI	CCGCTC	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	225, 345, 558
BssMI	GATC	2 cut(s)	30, 432
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	289, 671
Bst6I	CTCTTC	1 cut(s)	558
BstAFI	CTTAAG	1 cut(s)	617
BstC8I	GCNNGC	2 cut(s)	219, 234
BstDEI	CTNAG	4 cut(s)	11, 35, 386, 468
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	149, 360
BstKTI	GATC	2 cut(s)	33, 435
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	2 cut(s)	30, 432
BstMCI	CGRYCG	2 cut(s)	136, 225
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 319, 590
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	313
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	3 cut(s)	180, 520, 580
BstV2I	GAAGAC	1 cut(s)	37
BstZI	CGGCCG	2 cut(s)	133, 222
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	135, 224, 313
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	53
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	219, 234
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	2 cut(s)	149, 360
Cfr13I	GGNCC	1 cut(s)	311
CseI	GACGC	2 cut(s)	141, 487
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	3 cut(s)	28, 281, 355
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	4 cut(s)	11, 35, 386, 468
DpnI	GATC	2 cut(s)	32, 434
DpnII	GATC	2 cut(s)	30, 432
EaeI	YGGCCR	2 cut(s)	133, 222
EagI	CGGCCG	2 cut(s)	133, 222
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	236
EclXI	CGGCCG	2 cut(s)	133, 222
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	238
Eco52I	CGGCCG	2 cut(s)	133, 222
Eco53kI	GAGCTC	1 cut(s)	236
Eco81I	CCTNAGG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	3 cut(s)	31, 284, 358
FaiI	YATR	4 cut(s)	29, 282, 356, 543
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	3 cut(s)	27, 280, 354
FauI	CCCGC	1 cut(s)	164
Fnu4HI	GCNGC	6 cut(s)	150, 166, 169, 222, 534, 594
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	6 cut(s)	150, 166, 169, 222, 534, 594
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	2 cut(s)	148, 359
GluI	GCNGC	6 cut(s)	150, 166, 169, 222, 534, 594
GsuI	CTGGAG	2 cut(s)	336, 527
HaeIII	GGCC	3 cut(s)	135, 224, 313
HapII	CCGG	2 cut(s)	114, 162
HgaI	GACGC	2 cut(s)	141, 487
HhaI	GCGC	2 cut(s)	149, 360
Hin1II	CATG	3 cut(s)	31, 284, 358
Hin6I	GCGC	2 cut(s)	147, 358
HinP1I	GCGC	2 cut(s)	147, 358
HincII	GTYRAC	2 cut(s)	205, 331
HindII	GTYRAC	2 cut(s)	205, 331
HinfI	GANTC	6 cut(s)	117, 123, 129, 158, 427, 472
HpaI	GTTAAC	1 cut(s)	331
HpaII	CCGG	2 cut(s)	114, 162
Hpy166II	GTNNAC	4 cut(s)	205, 331, 340, 352
Hpy188I	TCNGA	9 cut(s)	12, 50, 122, 128, 157, 432, 477, 562, 640
Hpy188III	TCNNGA	1 cut(s)	506
Hpy8I	GTNNAC	4 cut(s)	205, 331, 340, 352
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	78, 622
HpyCH4III	ACNGT	2 cut(s)	289, 671
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	217, 415
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 319, 590
HpyF3I	CTNAG	4 cut(s)	11, 35, 386, 468
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	31, 284, 358
HspAI	GCGC	2 cut(s)	147, 358
KspAI	GTTAAC	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	30, 432
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	4 cut(s)	101, 216, 229, 448
Lsp1109I	GCAGC	3 cut(s)	180, 520, 580
LweI	GCATC	2 cut(s)	490, 520
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	32, 434
MbiI	CCGCTC	1 cut(s)	96
MboI	GATC	2 cut(s)	30, 432
MboII	GAAGA	8 cut(s)	37, 436, 453, 509, 575, 586, 589, 669
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	1 cut(s)	512
MlyI	GAGTC	2 cut(s)	152, 466
MmeI	TCCRAC	2 cut(s)	73, 135
MseI	TTAA	2 cut(s)	330, 618
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	2 cut(s)	171, 245
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	2 cut(s)	114, 162
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	3 cut(s)	242, 319, 590
NdeII	GATC	2 cut(s)	30, 432
NlaIII	CATG	3 cut(s)	31, 284, 358
NlaIV	GGNNCC	1 cut(s)	112
NmeAIII	GCCGAG	2 cut(s)	169, 250
NspI	RCATGY	1 cut(s)	358
OliI	CACNNNNGTG	1 cut(s)	347
PciSI	GCTCTTC	1 cut(s)	558
PfeI	GAWTC	4 cut(s)	117, 123, 129, 427
PkrI	GCNGC	6 cut(s)	151, 167, 170, 223, 535, 595
PleI	GAGTC	2 cut(s)	152, 466
PpsI	GAGTC	2 cut(s)	152, 466
Psp124BI	GAGCTC	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	214
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	238
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	330, 618
SatI	GCNGC	6 cut(s)	150, 166, 169, 222, 534, 594
Sau3AI	GATC	2 cut(s)	30, 432
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	2 cut(s)	152, 466
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	238
SfaNI	GCATC	2 cut(s)	490, 520
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	1 cut(s)	512
SsiI	CCGC	7 cut(s)	5, 94, 150, 165, 171, 221, 243
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	238
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	289, 671
TaiI	ACGT	1 cut(s)	45
TasI	AATT	1 cut(s)	512
TatI	WGTACW	1 cut(s)	88
TauI	GCSGC	3 cut(s)	152, 168, 224
TfiI	GAWTC	4 cut(s)	117, 123, 129, 427
Tru1I	TTAA	2 cut(s)	330, 618
Tru9I	TTAA	2 cut(s)	330, 618
TseI	GCWGC	3 cut(s)	168, 533, 593
TspDTI	ATGAA	1 cut(s)	60
Vha464I	CTTAAG	1 cut(s)	617
XapI	RAATTY	1 cut(s)	512
XceI	RCATGY	1 cut(s)	358
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.