Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008388

Physical Location & Seq

Genomic Coordinates Reverse (-)

9356693 .. 9359355

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G079700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGGTTCTTAGAACGACAACGAACATGATTCTCACACACATCCTTCAACCATACCTGTCATTTCCTCCATCAATCCGTACGACTCTGATTCGCTCCTCCAATGGCGGAATCAGAATCGGCAGTGTCCGGTGCGCCGCGTCGAATTCGGGAAGTGGCGGGAACAAGGTGTCGGCTCGGCTCTCTCAGGTCAACCAACTCTTGCAAGCAGCCGAGGAGCGAGCTCTCTCCGCTGACACCCAGCCCCCTCCTAAGATCACTTTAGACCATGTAACTGTGAGTTTTGCAAGAAGTGGGGGACCTGGAGGTCAGAATGTCAACAAAGTGAATACCAAGGTGGACATGCGCTTCAATTTACAAAAGGCGTATTGGCTAAGCGAATGGATCAGGGAGAGGATTTTGCAAATGGAGAAGAATCGGATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACAAAGACTCGAACACAAAAGGGTAACATTGAAGATGCTCTTGAAAAACTCCAGGCAATCATTGATGCTGCTTCTTATGTCCCACCTCCTCCCTCAGAAGAGCAAAAGAAGAAGATTGCTAAAATGGCTGCTATTGGCGAACAAAAACGCCTTAAGAGCAAGAAGGTTCTTTCAGACAAAAAAGCATTCAGAAGAAGTCGAGACAGTTGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0003824 GO:0004045 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006414 GO:0006415 GO:0006417 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0015934 GO:0016043 GO:0016150 GO:0016787 GO:0016788 GO:0019222 GO:0019538 GO:0022411 GO:0031323 GO:0031326 GO:0031974 GO:0032268 GO:0032543 GO:0032984 GO:0032991 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0052689 GO:0060255 GO:0065007 GO:0070013 GO:0070126 GO:0071704 GO:0071840 GO:0072344 GO:0080090 GO:0097159 GO:0098798 GO:0140053 GO:0140098 GO:0140101 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RF-1

Protein Analysis

223

Amino Acids

24.63

Weight (kDa)

10.25

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62850 AT1G62850 AT1G62850
fragaria_vesca	FvH4_5g00690 FvH4_5g00690 FvH4_5g00690
malus_domestica	MD04G1079400.v1.1
prunus_persica	Prupe.5G079700_v2.0.a1 Prupe.5G079700_v2.0.a1 Prupe.5G079700_v2.0.a1
pyrus_communis	pycom04g07120
rosa_chinensis	RchiOBHm_Chr7g0201521
rosa_laevigata	RLG00000003665
rosa_multiflora	Rmu_sc0002046.1_g000001 Rmu_sc0017656.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255250
rosa_rugosa	Rorug07G0064600 Rorug07G0064700
rosa_samantha	Rh7AG191200 Rh7BG193500 Rh7CG202400 Rh7DG196400
rosa_wichuraiana	Rw7G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	306
AccII	CGCG	1 cut(s)	140
AciI	CCGC	5 cut(s)	5, 108, 138, 159, 231
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	145
AfaI	GTAC	1 cut(s)	82
AflII	CTTAAG	1 cut(s)	605
AgsI	TTSAA	5 cut(s)	50, 352, 453, 485, 497
AjnI	CCWGG	2 cut(s)	301, 504
AluBI	AGCT	2 cut(s)	224, 439
AluI	AGCT	2 cut(s)	224, 439
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	648
AlwI	GGATC	1 cut(s)	392
ApeKI	GCWGC	3 cut(s)	209, 521, 581
ApoI	RAATTY	1 cut(s)	145
AspLEI	GCGC	2 cut(s)	137, 348
AspS9I	GGNCC	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	3 cut(s)	221, 508, 568
BccI	CCATC	2 cut(s)	79, 425
BciT130I	CCWGG	2 cut(s)	303, 506
BcoDI	GTCTC	1 cut(s)	648
BfrI	CTTAAG	1 cut(s)	605
BisI	GCNGC	4 cut(s)	138, 210, 522, 582
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	4 cut(s)	139, 211, 523, 583
Bme1390I	CCNGG	2 cut(s)	303, 506
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	303, 506
BmsI	GCATC	2 cut(s)	478, 508
BpmI	CTGGAG	2 cut(s)	324, 488
Bpu1102I	GCTNAGC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	213, 333
BsaWI	WCCGGW	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	303, 506
BseDI	CCNNGG	2 cut(s)	213, 333
BseGI	GGATG	2 cut(s)	42, 436
BseMII	CTCAG	2 cut(s)	200, 561
BseRI	GAGGAG	3 cut(s)	88, 230, 531
BseXI	GCAGC	3 cut(s)	221, 508, 568
BseYI	CCCAGC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	130
BsiWI	CGTACG	1 cut(s)	80
BslFI	GGGAC	2 cut(s)	312, 518
BsmAI	GTCTC	1 cut(s)	648
BsmFI	GGGAC	2 cut(s)	312, 518
BsmI	GAATGC	1 cut(s)	638
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	255, 384
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	5 cut(s)	5, 108, 138, 159, 231
BspCNI	CTCAG	2 cut(s)	199, 560
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	392
BspQI	GCTCTTC	1 cut(s)	546
BspTI	CTTAAG	1 cut(s)	605
BssECI	CCNNGG	2 cut(s)	213, 333
BssMI	GATC	2 cut(s)	255, 384
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	303, 506
Bst4CI	ACNGT	2 cut(s)	277, 659
Bst6I	CTCTTC	1 cut(s)	546
BstAFI	CTTAAG	1 cut(s)	605
BstC8I	GCNNGC	2 cut(s)	207, 222
BstDEI	CTNAG	5 cut(s)	11, 186, 252, 374, 547
BstF5I	GGATG	2 cut(s)	42, 436
BstFNI	CGCG	1 cut(s)	140
BstHHI	GCGC	2 cut(s)	137, 348
BstKTI	GATC	2 cut(s)	258, 387
BstMAI	GTCTC	1 cut(s)	648
BstMBI	GATC	2 cut(s)	255, 384
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 578, 609
BstNI	CCWGG	2 cut(s)	303, 506
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	2 cut(s)	301, 504
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	221, 508, 568
BtsCI	GGATG	2 cut(s)	42, 436
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	2 cut(s)	207, 222
CfoI	GCGC	2 cut(s)	137, 348
Cfr13I	GGNCC	1 cut(s)	299
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	3 cut(s)	28, 269, 343
CviJI	RGCY	8 cut(s)	176, 181, 212, 224, 244, 373, 439, 581
CviKI_1	RGCY	8 cut(s)	176, 181, 212, 224, 244, 373, 439, 581
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	5 cut(s)	11, 186, 252, 374, 547
DpnI	GATC	2 cut(s)	257, 386
DpnII	GATC	2 cut(s)	255, 384
DrdI	GACNNNNNNGTC	1 cut(s)	306
DseDI	GACNNNNNNGTC	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
EciI	GGCGGA	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	301, 504
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	3 cut(s)	31, 272, 346
FaiI	YATR	5 cut(s)	29, 55, 270, 344, 531
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FaqI	GGGAC	2 cut(s)	312, 518
FatI	CATG	3 cut(s)	27, 268, 342
FauI	CCCGC	1 cut(s)	152
Fnu4HI	GCNGC	4 cut(s)	138, 210, 522, 582
FokI	GGATG	2 cut(s)	29, 443
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	4 cut(s)	138, 210, 522, 582
GlaI	GCGC	2 cut(s)	136, 347
GluI	GCNGC	4 cut(s)	138, 210, 522, 582
GsaI	CCCAGC	1 cut(s)	244
GsuI	CTGGAG	2 cut(s)	324, 488
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	2 cut(s)	137, 348
Hin1II	CATG	3 cut(s)	31, 272, 346
Hin6I	GCGC	2 cut(s)	135, 346
HinP1I	GCGC	2 cut(s)	135, 346
HincII	GTYRAC	2 cut(s)	193, 319
HindII	GTYRAC	2 cut(s)	193, 319
HinfI	GANTC	7 cut(s)	31, 85, 91, 111, 117, 415, 460
HpaII	CCGG	1 cut(s)	130
Hpy166II	GTNNAC	3 cut(s)	193, 319, 340
Hpy188I	TCNGA	7 cut(s)	90, 116, 312, 420, 550, 628, 644
Hpy188III	TCNNGA	3 cut(s)	150, 494, 653
Hpy8I	GTNNAC	3 cut(s)	193, 319, 340
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	56, 610
HpyCH4III	ACNGT	2 cut(s)	277, 659
HpyCH4V	TGCA	3 cut(s)	205, 287, 403
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 578, 609
HpyF3I	CTNAG	5 cut(s)	11, 186, 252, 374, 547
Hsp92II	CATG	3 cut(s)	31, 272, 346
HspAI	GCGC	2 cut(s)	135, 346
Kzo9I	GATC	2 cut(s)	255, 384
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	3 cut(s)	101, 217, 436
LpnPI	CCDG	9 cut(s)	71, 143, 173, 254, 288, 315, 373, 491, 518
Lsp1109I	GCAGC	3 cut(s)	221, 508, 568
LweI	GCATC	2 cut(s)	478, 508
MaeIII	GTNAC	2 cut(s)	271, 476
MalI	GATC	2 cut(s)	257, 386
MboI	GATC	2 cut(s)	255, 384
MboII	GAAGA	7 cut(s)	424, 441, 497, 563, 574, 577, 657
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	2 cut(s)	145, 352
MlyI	GAGTC	2 cut(s)	79, 454
MnlI	CCTC	9 cut(s)	78, 109, 208, 258, 299, 387, 549, 552, 556
MseI	TTAA	2 cut(s)	423, 606
MspA1I	CMGCKG	1 cut(s)	233
MspCI	CTTAAG	1 cut(s)	605
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	2 cut(s)	303, 506
Mva1269I	GAATGC	1 cut(s)	638
MvaI	CCWGG	2 cut(s)	303, 506
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	230, 578, 609
NdeII	GATC	2 cut(s)	255, 384
NlaIII	CATG	3 cut(s)	31, 272, 346
NlaIV	GGNNCC	1 cut(s)	300
NmeAIII	GCCGAG	2 cut(s)	157, 238
NspI	RCATGY	1 cut(s)	346
PciSI	GCTCTTC	1 cut(s)	546
PctI	GAATGC	1 cut(s)	638
PfeI	GAWTC	5 cut(s)	31, 91, 111, 117, 415
Pfl23II	CGTACG	1 cut(s)	80
PkrI	GCNGC	4 cut(s)	139, 211, 523, 583
PleI	GAGTC	2 cut(s)	79, 454
PpsI	GAGTC	2 cut(s)	79, 454
PpuMI	RGGWCCY	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	299
Psp6I	CCWGG	2 cut(s)	301, 504
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	2 cut(s)	301, 504
PspLI	CGTACG	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SacI	GAGCTC	1 cut(s)	226
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	2 cut(s)	423, 606
SatI	GCNGC	4 cut(s)	138, 210, 522, 582
Sau3AI	GATC	2 cut(s)	255, 384
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	2 cut(s)	79, 454
ScrFI	CCNGG	2 cut(s)	303, 506
SduI	GDGCHC	1 cut(s)	226
SfaNI	GCATC	2 cut(s)	478, 508
SinI	GGWCC	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	2 cut(s)	145, 352
SsiI	CCGC	5 cut(s)	5, 108, 138, 159, 231
SstI	GAGCTC	1 cut(s)	226
StyD4I	CCNGG	2 cut(s)	301, 504
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	277, 659
TaqI	TCGA	3 cut(s)	143, 463, 652
TasI	AATT	2 cut(s)	145, 352
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	5 cut(s)	31, 91, 111, 117, 415
Tru1I	TTAA	2 cut(s)	423, 606
Tru9I	TTAA	2 cut(s)	423, 606
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	3 cut(s)	209, 521, 581
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	605
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.