Rorug07G0064700

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0008388
Physical Location & Seq
Forward (+)
4883573 .. 4893863
10291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0064700.1

Sequence Viewer

Length: 1365 bp
ATGCTAGGCAACCTCCCCCATCGAAGCCTCCAACAATTGGCCAAAAAATATGGACACATCATGTCCATTCGTCTAGGCAATGTTTCTACCATAGTAGTCTCCTCCCCACAAGCCGCAGAGCTATTCATCAAAACCCATGACACTAATTTCGCCAGCCGGCCCAAAATCCAAGCCTCAGAGTACCTATCCTACGGCACAAAGGGCATGGCCTTTTCCCAATACGGTCCCTATTGGCACCATATGAGGAAGCTCTGCATGCTTCATCTCTTCTGTCTAGCAAAAATGGAAGTTTTCTCGCCGCTGCGAAAGGAGGAACTGGGAGTGCTGGTAAGAAAGCTGAAGAGAGCTGCAGAGGAAGGTGGAGTCATGGATGTTAGTGAGAAGATTGGTGTGATGAATGAGGACATAACGTATAGGATGGTGTTGGGTTGTAAAAGGGATGATAGGTTTAATTTGAAAGCCATTGTTGAGGAAACGCTTTTCTTGACTGGGGCTTTCAATATAGTTCATTCCCTTGTTGCACTTGATATTCAGGGATTGACCAAGCGCTTAAAGAAAGTTACCAAGATGATCGATCAACTCCTGGAGAAGATAATAGACCAGCATGAACAAGTTGCCAACACCAAGAGTGGGAAACAAGGCCATGAGGACTTTGTAGACGTGTTGCTTTCGTTAACGAACCGACCGTTGAACCCGAATGATGAGCAAGTACACTTCCTTGATCGAACAAATGTGAAAGCCATCTTAGTAGACATGATAACGGCGGCTTTTGATACTTCGGCCACATCGATTGTTTGGAGCCTTGCCGAGCTCTTGAGGCATCCATGGATCATGAAGAATCTCCAAGAAGAGATCCAAAGTGTGGTTGGTATGGACCGAATGGTGGAAGAATCTGATTTGCCCAAGCTGGATTACTTGAGTATGGTGGTAAAGGAGAGCTTCAGACTACACCCAGTTGCACCGTTACTAGTCCCACATGAATCCATCGAGGACATTACCATCGATGGATATGACATACCCAAGAAGTCGCGGATCATAGTAAACATCTGGAGCATTGGAAGAGATCCTAATGTTTGGTCAGAAAATGTTGAGGAGTTTTATCCTGAAAGGTTCATGAACAGCAATATAGACCTCCGGGGACATAACTTTCAGCTCATCCCATTTGGGTCTGGGCGAAGAGGGTGTCCGGGTATGCAATTAGGGCTAGCCACAGTTCGGCTAGTTCTGGCACAACTGGTTCATTGCTTTAACTGGGAGCTCCCAAATGGCTTGCTACCTCAAGACTTGGACATGTCTGAGGATTTCGGCTTATCACTGTCAAAAGCCAAACACTTGCTTGCTAAGCCAACGTACCGTCTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

454

Amino Acids

51.65

Weight (kDa)

6.98

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 4 - 441 4.4e-96 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 234
AccB7I CCANNNNNTGG 2 cut(s) 37, 862
AccI GTMKAC 2 cut(s) 657, 750
AccII CGCG 1 cut(s) 1030
AciI CCGC 4 cut(s) 114, 299, 764, 1030
AclWI GGATC 4 cut(s) 836, 847, 1040, 1058
AcoI YGGCCR 2 cut(s) 39, 780
AcuI CTGAAG 2 cut(s) 359, 925
AfaI GTAC 3 cut(s) 182, 711, 1352
AfeI AGCGCT 1 cut(s) 548
AfiI CCNNNNNNNGG 5 cut(s) 37, 630, 862, 883, 1215
AflIII ACRYGT 2 cut(s) 660, 1290
AgsI TTSAA 3 cut(s) 457, 499, 691
AhlI ACTAGT 1 cut(s) 967
AjiI CACGTC 1 cut(s) 661
AjnI CCWGG 1 cut(s) 582
AluBI AGCT 9 cut(s) 121, 250, 337, 347, 811, 907, 939, 1153, 1258
AluI AGCT 9 cut(s) 121, 250, 337, 347, 811, 907, 939, 1153, 1258
Alw21I GWGCWC 2 cut(s) 813, 1260
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 4 cut(s) 836, 847, 1040, 1058
Aor51HI AGCGCT 1 cut(s) 548
AoxI GGCC 5 cut(s) 39, 158, 207, 640, 780
ApeKI GCWGC 2 cut(s) 301, 347
ArsI GACNNNNNNTTYG 4 cut(s) 131, 163, 1168, 1200
AspLEI GCGC 1 cut(s) 549
AspS9I GGNCC 3 cut(s) 159, 224, 874
AsuC2I CCSGG 2 cut(s) 1136, 1188
AsuNHI GCTAGC 1 cut(s) 1204
AvaII GGWCC 2 cut(s) 224, 874
BalI TGGCCA 1 cut(s) 41
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 2 cut(s) 813, 1260
Bbv12I GWGCWC 2 cut(s) 813, 1260
BbvI GCAGC 2 cut(s) 288, 334
BccI CCATC 6 cut(s) 27, 412, 749, 992, 998, 1007
BceAI ACGGC 2 cut(s) 208, 777
BciT130I CCWGG 1 cut(s) 584
BcnI CCSGG 2 cut(s) 1136, 1188
BcoDI GTCTC 1 cut(s) 103
BcuI ACTAGT 1 cut(s) 967
BfaI CTAG 6 cut(s) 5, 74, 275, 968, 1205, 1220
BfmI CTRYAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 550
BisI GCNGC 5 cut(s) 114, 299, 302, 348, 765
BlpI GCTNAGC 1 cut(s) 1341
BlsI GCNGC 5 cut(s) 115, 300, 303, 349, 766
Bme1390I CCNGG 3 cut(s) 584, 1136, 1188
Bme18I GGWCC 2 cut(s) 224, 874
BmgBI CACGTC 1 cut(s) 661
BmgT120I GGNCC 3 cut(s) 159, 224, 874
BmiI GGNNCC 3 cut(s) 226, 236, 800
BmrFI CCNGG 3 cut(s) 584, 1136, 1188
BmrI ACTGGG 4 cut(s) 326, 498, 947, 1261
BmsI GCATC 1 cut(s) 829
BmtI GCTAGC 1 cut(s) 1208
BmuI ACTGGG 4 cut(s) 326, 498, 947, 1261
BpmI CTGGAG 2 cut(s) 605, 1069
Bpu1102I GCTNAGC 1 cut(s) 1341
BpuEI CTTGAG 3 cut(s) 835, 937, 1263
BpuMI CCSGG 2 cut(s) 1136, 1188
Bsa29I ATCGAT 3 cut(s) 573, 788, 1002
BsaJI CCNNGG 2 cut(s) 824, 1135
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 630, 862, 883, 1215
Bse118I RCCGGY 1 cut(s) 156
Bse1I ACTGG 5 cut(s) 321, 493, 953, 1239, 1256
Bse3DI GCAATG 2 cut(s) 85, 1240
BseBI CCWGG 1 cut(s) 584
BseCI ATCGAT 3 cut(s) 573, 788, 1002
BseDI CCNNGG 2 cut(s) 824, 1135
BseGI GGATG 5 cut(s) 376, 423, 445, 820, 1155
BseLI CCNNNNNNNGG 5 cut(s) 37, 630, 862, 883, 1215
BseMI GCAATG 2 cut(s) 85, 1240
BseMII CTCAG 2 cut(s) 189, 1287
BseNI ACTGG 5 cut(s) 321, 493, 953, 1239, 1256
BseRI GAGGAG 2 cut(s) 91, 1106
BseXI GCAGC 2 cut(s) 288, 334
Bsh1236I CGCG 1 cut(s) 1030
Bsh1285I CGRYCG 1 cut(s) 686
BshFI GGCC 5 cut(s) 41, 160, 209, 642, 782
BshNI GGYRCC 1 cut(s) 234
BshVI ATCGAT 3 cut(s) 573, 788, 1002
BsiEI CGRYCG 1 cut(s) 686
BsiHKAI GWGCWC 2 cut(s) 813, 1260
BsiSI CCGG 3 cut(s) 157, 1135, 1187
BslFI GGGAC 3 cut(s) 210, 956, 1152
BslI CCNNNNNNNGG 5 cut(s) 37, 630, 862, 883, 1215
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 3 cut(s) 210, 956, 1152
BsnI GGCC 5 cut(s) 41, 160, 209, 642, 782
Bsp1286I GDGCHC 2 cut(s) 813, 1260
Bsp143I GATC 7 cut(s) 570, 574, 721, 828, 852, 1032, 1063
Bsp1720I GCTNAGC 1 cut(s) 1341
Bsp19I CCATGG 1 cut(s) 824
BspACI CCGC 4 cut(s) 114, 299, 764, 1030
BspANI GGCC 5 cut(s) 41, 160, 209, 642, 782
BspCNI CTCAG 2 cut(s) 188, 1288
BspDI ATCGAT 3 cut(s) 573, 788, 1002
BspFNI CGCG 1 cut(s) 1030
BspHI TCATGA 2 cut(s) 831, 1113
BspLI GGNNCC 3 cut(s) 226, 236, 800
BspMAI CTGCAG 1 cut(s) 352
BspOI GCTAGC 1 cut(s) 1208
BspPI GGATC 4 cut(s) 836, 847, 1040, 1058
BspT107I GGYRCC 1 cut(s) 234
BsrDI GCAATG 2 cut(s) 85, 1240
BsrFI RCCGGY 1 cut(s) 156
BsrI ACTGG 5 cut(s) 321, 493, 953, 1239, 1256
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 2 cut(s) 824, 1135
BssMI GATC 7 cut(s) 570, 574, 721, 828, 852, 1032, 1063
BssT1I CCWWGG 1 cut(s) 824
Bst2UI CCWGG 1 cut(s) 584
Bst4CI ACNGT 6 cut(s) 224, 687, 963, 1213, 1317, 1355
Bst6I CTCTTC 5 cut(s) 272, 335, 843, 1054, 1171
BstC8I GCNNGC 6 cut(s) 154, 158, 257, 1206, 1271, 1338
BstDEI CTNAG 4 cut(s) 175, 745, 1296, 1341
BstDSI CCRYGG 1 cut(s) 824
BstF5I GGATG 5 cut(s) 376, 423, 445, 820, 1155
BstFNI CGCG 1 cut(s) 1030
BstH2I RGCGCY 1 cut(s) 550
BstHHI GCGC 1 cut(s) 549
BstKTI GATC 7 cut(s) 573, 577, 724, 831, 855, 1035, 1066
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 7 cut(s) 570, 574, 721, 828, 852, 1032, 1063
BstMCI CGRYCG 1 cut(s) 686
BstMWI GCNNNNNNNGC 5 cut(s) 201, 256, 817, 1201, 1342
BstNI CCWGG 1 cut(s) 584
BstNSI RCATGY 2 cut(s) 259, 1294
BstSCI CCNGG 3 cut(s) 582, 1134, 1186
BstSFI CTRYAG 1 cut(s) 348
BstUI CGCG 1 cut(s) 1030
BstV1I GCAGC 2 cut(s) 288, 334
BstX2I RGATCY 2 cut(s) 852, 1063
BstYI RGATCY 2 cut(s) 852, 1063
Bsu15I ATCGAT 3 cut(s) 573, 788, 1002
BsuRI GGCC 5 cut(s) 41, 160, 209, 642, 782
BsuTUI ATCGAT 3 cut(s) 573, 788, 1002
BtgI CCRYGG 1 cut(s) 824
BtrI CACGTC 1 cut(s) 661
BtsCI GGATG 5 cut(s) 376, 423, 445, 820, 1155
BtsIMutI CAGTG 1 cut(s) 1313
Cac8I GCNNGC 6 cut(s) 154, 158, 257, 1206, 1271, 1338
CciI TCATGA 2 cut(s) 831, 1113
CfoI GCGC 1 cut(s) 549
Cfr10I RCCGGY 1 cut(s) 156
Cfr13I GGNCC 3 cut(s) 159, 224, 874
ClaI ATCGAT 3 cut(s) 573, 788, 1002
Csp6I GTAC 3 cut(s) 181, 710, 1351
CspCI CAANNNNNGTGG 2 cut(s) 772, 807
CviQI GTAC 3 cut(s) 181, 710, 1351
DdeI CTNAG 4 cut(s) 175, 745, 1296, 1341
DpnI GATC 7 cut(s) 572, 576, 723, 830, 854, 1034, 1065
DpnII GATC 7 cut(s) 570, 574, 721, 828, 852, 1032, 1063
EaeI YGGCCR 2 cut(s) 39, 780
Eam1104I CTCTTC 5 cut(s) 272, 335, 843, 1054, 1171
EarI CTCTTC 5 cut(s) 272, 335, 843, 1054, 1171
Ecl136II GAGCTC 2 cut(s) 811, 1258
Eco130I CCWWGG 1 cut(s) 824
Eco24I GRGCYC 2 cut(s) 813, 1260
Eco47I GGWCC 2 cut(s) 224, 874
Eco47III AGCGCT 1 cut(s) 548
Eco53kI GAGCTC 2 cut(s) 811, 1258
Eco57I CTGAAG 2 cut(s) 359, 925
EcoICRI GAGCTC 2 cut(s) 811, 1258
EcoRII CCWGG 1 cut(s) 582
EcoT14I CCWWGG 1 cut(s) 824
EcoT38I GRGCYC 2 cut(s) 813, 1260
ErhI CCWWGG 1 cut(s) 824
FalI AAGNNNNNCTT 2 cut(s) 923, 955
FaqI GGGAC 3 cut(s) 210, 956, 1152
FauNDI CATATG 1 cut(s) 240
FblI GTMKAC 2 cut(s) 657, 750
Fnu4HI GCNGC 5 cut(s) 114, 299, 302, 348, 765
FokI GGATG 5 cut(s) 383, 430, 452, 807, 1142
FriOI GRGCYC 2 cut(s) 813, 1260
Fsp4HI GCNGC 5 cut(s) 114, 299, 302, 348, 765
FspBI CTAG 6 cut(s) 5, 74, 275, 968, 1205, 1220
GlaI GCGC 1 cut(s) 548
GluI GCNGC 5 cut(s) 114, 299, 302, 348, 765
GsuI CTGGAG 2 cut(s) 605, 1069
HaeII RGCGCY 1 cut(s) 550
HaeIII GGCC 5 cut(s) 41, 160, 209, 642, 782
HapII CCGG 3 cut(s) 157, 1135, 1187
HhaI GCGC 1 cut(s) 549
Hin6I GCGC 1 cut(s) 547
HinP1I GCGC 1 cut(s) 547
HincII GTYRAC 1 cut(s) 675
HindII GTYRAC 1 cut(s) 675
HinfI GANTC 4 cut(s) 363, 838, 890, 980
HpaI GTTAAC 1 cut(s) 675
HpaII CCGG 3 cut(s) 157, 1135, 1187
Hpy166II GTNNAC 5 cut(s) 658, 675, 712, 751, 1042
Hpy188I TCNGA 5 cut(s) 178, 895, 944, 1081, 1297
Hpy188III TCNNGA 7 cut(s) 484, 814, 832, 1048, 1103, 1114, 1280
Hpy8I GTNNAC 5 cut(s) 658, 675, 712, 751, 1042
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 6 cut(s) 224, 687, 963, 1213, 1317, 1355
HpyCH4IV ACGT 3 cut(s) 410, 660, 1349
HpyCH4V TGCA 5 cut(s) 255, 350, 521, 959, 1195
HpyF10VI GCNNNNNNNGC 5 cut(s) 201, 256, 817, 1201, 1342
HpyF3I CTNAG 4 cut(s) 175, 745, 1296, 1341
HpySE526I ACGT 3 cut(s) 410, 660, 1349
HspAI GCGC 1 cut(s) 547
KroI GCCGGC 1 cut(s) 156
KroNI GCCGGC 1 cut(s) 158
KspAI GTTAAC 1 cut(s) 675
Kzo9I GATC 7 cut(s) 570, 574, 721, 828, 852, 1032, 1063
LmnI GCTCC 4 cut(s) 798, 1050, 1255, 1263
Lsp1109I GCAGC 2 cut(s) 288, 334
LweI GCATC 1 cut(s) 829
MaeI CTAG 6 cut(s) 5, 74, 275, 968, 1205, 1220
MaeII ACGT 3 cut(s) 410, 660, 1349
MaeIII GTNAC 2 cut(s) 559, 963
MalI GATC 7 cut(s) 572, 576, 723, 830, 854, 1034, 1065
MboI GATC 7 cut(s) 570, 574, 721, 828, 852, 1032, 1063
MboII GAAGA 9 cut(s) 259, 352, 394, 601, 847, 860, 899, 1071, 1188
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 2 cut(s) 852, 1063
MhlI GDGCHC 2 cut(s) 813, 1260
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 4 cut(s) 35, 145, 451, 1196
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 1 cut(s) 372
MmeI TCCRAC 1 cut(s) 55
Mox20I TGGCCA 1 cut(s) 41
MroNI GCCGGC 1 cut(s) 156
MscI TGGCCA 1 cut(s) 41
MseI TTAA 4 cut(s) 450, 551, 674, 1248
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 3 cut(s) 157, 1135, 1187
MspR9I CCNGG 3 cut(s) 584, 1136, 1188
MunI CAATTG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 584
MvnI CGCG 1 cut(s) 1030
MwoI GCNNNNNNNGC 5 cut(s) 201, 256, 817, 1201, 1342
NaeI GCCGGC 1 cut(s) 158
NciI CCSGG 2 cut(s) 1136, 1188
NcoI CCATGG 1 cut(s) 824
NdeI CATATG 1 cut(s) 240
NdeII GATC 7 cut(s) 570, 574, 721, 828, 852, 1032, 1063
NgoMIV GCCGGC 1 cut(s) 156
NheI GCTAGC 1 cut(s) 1204
NlaIV GGNNCC 3 cut(s) 226, 236, 800
NmeAIII GCCGAG 1 cut(s) 832
NspI RCATGY 2 cut(s) 259, 1294
PaeI GCATGC 1 cut(s) 259
PagI TCATGA 2 cut(s) 831, 1113
PciI ACATGT 1 cut(s) 1290
PcsI WCGNNNNNNNCGW 2 cut(s) 683, 785
PdiI GCCGGC 1 cut(s) 158
PfeI GAWTC 3 cut(s) 838, 890, 980
PflMI CCANNNNNTGG 2 cut(s) 37, 862
PfoI TCCNGGA 1 cut(s) 582
PkrI GCNGC 5 cut(s) 115, 300, 303, 349, 766
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
PscI ACATGT 1 cut(s) 1290
Psp124BI GAGCTC 2 cut(s) 813, 1260
Psp6I CCWGG 1 cut(s) 582
PspGI CCWGG 1 cut(s) 582
PspN4I GGNNCC 3 cut(s) 226, 236, 800
PspPI GGNCC 3 cut(s) 159, 224, 874
PstI CTGCAG 1 cut(s) 352
PsuI RGATCY 2 cut(s) 852, 1063
RsaI GTAC 3 cut(s) 182, 711, 1352
RsaNI GTAC 3 cut(s) 181, 710, 1351
SacI GAGCTC 2 cut(s) 813, 1260
SaqAI TTAA 4 cut(s) 450, 551, 674, 1248
SatI GCNGC 5 cut(s) 114, 299, 302, 348, 765
Sau3AI GATC 7 cut(s) 570, 574, 721, 828, 852, 1032, 1063
Sau96I GGNCC 3 cut(s) 159, 224, 874
SchI GAGTC 1 cut(s) 372
ScrFI CCNGG 3 cut(s) 584, 1136, 1188
SduI GDGCHC 2 cut(s) 813, 1260
SfaNI GCATC 1 cut(s) 829
SfcI CTRYAG 1 cut(s) 348
SinI GGWCC 2 cut(s) 224, 874
SmlI CTYRAG 3 cut(s) 814, 916, 1278
SmoI CTYRAG 3 cut(s) 814, 916, 1278
SpeI ACTAGT 1 cut(s) 967
SphI GCATGC 1 cut(s) 259
Sse9I AATT 4 cut(s) 35, 145, 451, 1196
SsiI CCGC 4 cut(s) 114, 299, 764, 1030
SspMI CTAG 6 cut(s) 5, 74, 275, 968, 1205, 1220
SstI GAGCTC 2 cut(s) 813, 1260
StyD4I CCNGG 3 cut(s) 582, 1134, 1186
StyI CCWWGG 1 cut(s) 824
TaaI ACNGT 6 cut(s) 224, 687, 963, 1213, 1317, 1355
TaiI ACGT 3 cut(s) 413, 663, 1352
TaqI TCGA 6 cut(s) 22, 573, 724, 788, 987, 1002
TaqII GACCGA 1 cut(s) 891
TasI AATT 4 cut(s) 35, 145, 451, 1196
TatI WGTACW 1 cut(s) 709
TauI GCSGC 3 cut(s) 116, 301, 767
TfiI GAWTC 3 cut(s) 838, 890, 980
Tru1I TTAA 4 cut(s) 450, 551, 674, 1248
Tru9I TTAA 4 cut(s) 450, 551, 674, 1248
TscAI CASTG 1 cut(s) 1320
TseI GCWGC 2 cut(s) 301, 347
TspRI CASTG 1 cut(s) 1320
Van91I CCANNNNNTGG 2 cut(s) 37, 862
VpaK11BI GGWCC 2 cut(s) 224, 874
XceI RCATGY 2 cut(s) 259, 1294
XcmI CCANNNNNNNNNTGG 1 cut(s) 863
XmiI GTMKAC 2 cut(s) 657, 750
XspI CTAG 6 cut(s) 5, 74, 275, 968, 1205, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.