Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0008388

Physical Location & Seq

Genomic Coordinates Forward (+)

10907613 .. 10911400

Gene Structure 3788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1079400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGGTTCTGAGAACCACAACGAACATGATCCTCAGGCACATCTGCCGACCATCCTTGTCATTTCCTTCATCAATCCCTACGATTGTACTCCGCTCCTCCAATGGAGGAACCGGAATCGGAATCGGAATCGGAATCGGCCGTGTCCGTTGCGCCGCTTCGGACTCCGGCGGCAGCGGGAACAAGGTGTCGGCTCGGCTCTCGCAGGTCAACCAGCTCCTGCAAGCGGCCGAGGAGCGAGCTCTCTCGGCTGACAAACATCCCCCTCCTAAAATCACGCTAGACCATGTAACTGTTAGTTTTGCCAGAAGTGGAGGGCCTGGAGGGCAGAATGTTAACAAAGTGAACACCAAGGTGGACATGCGCTTCAATGTAGAAAAGGCGTATTGGCTAAGTGAATGGGTCAGGGAGAGGATTTTGCAAATGGAGAAGAATCGGATCAACAAAGATGGGGAGCTTGTGATTTCTTCAACTAAGACTCGGACGCAAAAGGGTAATATTGAAGATGCTCTGGAGAAATTTCAGGCAATTATTGATGCTGCTTCTTATGTCCCACCTCCTCCCTCGGAAGAGCAAAAGAAGAAGATAGCTAAAATGGCTGCCATTGGGGAACAAAAACGCCTTAAGAGCAAGAAGGTTCTTTCAGACAAAAAAGCATTTAGAAGAAGCCGAGACAGTTGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0003824 GO:0004045 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006414 GO:0006415 GO:0006417 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0015934 GO:0016043 GO:0016150 GO:0016787 GO:0016788 GO:0019222 GO:0019538 GO:0022411 GO:0031323 GO:0031326 GO:0031974 GO:0032268 GO:0032543 GO:0032984 GO:0032991 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0052689 GO:0060255 GO:0065007 GO:0070013 GO:0070126 GO:0071704 GO:0071840 GO:0072344 GO:0080090 GO:0097159 GO:0098798 GO:0140053 GO:0140098 GO:0140101 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RF-1

Protein Analysis

229

Amino Acids

25.06

Weight (kDa)

10.18

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RF-1	PF00472	91 - 213	7.3e-16	RF-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62850 AT1G62850 AT1G62850
fragaria_vesca	FvH4_5g00690 FvH4_5g00690 FvH4_5g00690
malus_domestica	MD04G1079400.v1.1
prunus_persica	Prupe.5G079700_v2.0.a1 Prupe.5G079700_v2.0.a1 Prupe.5G079700_v2.0.a1
pyrus_communis	pycom04g07120
rosa_chinensis	RchiOBHm_Chr7g0201521
rosa_laevigata	RLG00000003665
rosa_multiflora	Rmu_sc0002046.1_g000001 Rmu_sc0017656.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255250
rosa_rugosa	Rorug07G0064600 Rorug07G0064700
rosa_samantha	Rh7AG191200 Rh7BG193500 Rh7CG202400 Rh7DG196400
rosa_wichuraiana	Rw7G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccBSI	CCGCTC	1 cut(s)	96
AciI	CCGC	6 cut(s)	5, 94, 156, 171, 177, 227
AclWI	GGATC	2 cut(s)	25, 446
AcoI	YGGCCR	2 cut(s)	139, 228
AcsI	RAATTY	1 cut(s)	518
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	226
AflII	CTTAAG	1 cut(s)	623
AgsI	TTSAA	3 cut(s)	370, 471, 503
AjnI	CCWGG	1 cut(s)	319
AleI	CACNNNNGTG	1 cut(s)	353
AluBI	AGCT	4 cut(s)	217, 242, 457, 590
AluI	AGCT	4 cut(s)	217, 242, 457, 590
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	666
AlwI	GGATC	2 cut(s)	25, 446
AlwNI	CAGNNNCTG	1 cut(s)	220
AoxI	GGCC	3 cut(s)	139, 228, 317
ApeKI	GCWGC	3 cut(s)	174, 539, 599
ApoI	RAATTY	1 cut(s)	518
AspLEI	GCGC	2 cut(s)	155, 366
AspS9I	GGNCC	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	3 cut(s)	186, 526, 586
BccI	CCATC	2 cut(s)	61, 443
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	666
BfaI	CTAG	1 cut(s)	281
BfrI	CTTAAG	1 cut(s)	623
BfuAI	ACCTGC	1 cut(s)	196
BglI	GCCNNNNNGGC	1 cut(s)	325
BisI	GCNGC	6 cut(s)	156, 172, 175, 228, 540, 600
BlsI	GCNGC	6 cut(s)	157, 173, 176, 229, 541, 601
Bme1390I	CCNGG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	2 cut(s)	496, 526
BpmI	CTGGAG	2 cut(s)	342, 533
BsaJI	CCNNGG	3 cut(s)	231, 351, 564
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse21I	CCTNAGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	3 cut(s)	231, 351, 564
BseGI	GGATG	2 cut(s)	53, 259
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	49
BseRI	GAGGAG	3 cut(s)	88, 248, 549
BseX3I	CGGCCG	2 cut(s)	139, 228
BseXI	GCAGC	3 cut(s)	186, 526, 586
Bsh1285I	CGRYCG	2 cut(s)	142, 231
BshFI	GGCC	3 cut(s)	141, 230, 319
BsiEI	CGRYCG	2 cut(s)	142, 231
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	114, 168
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	666
BsmFI	GGGAC	1 cut(s)	536
BsnI	GGCC	3 cut(s)	141, 230, 319
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	30, 438
BspACI	CCGC	6 cut(s)	5, 94, 156, 171, 177, 227
BspANI	GGCC	3 cut(s)	141, 230, 319
BspCNI	CTCAG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	2 cut(s)	25, 446
BspQI	GCTCTTC	1 cut(s)	564
BspTI	CTTAAG	1 cut(s)	623
BsrBI	CCGCTC	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	231, 351, 564
BssMI	GATC	2 cut(s)	30, 438
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	295, 677
Bst6I	CTCTTC	1 cut(s)	564
BstAFI	CTTAAG	1 cut(s)	623
BstC8I	GCNNGC	2 cut(s)	225, 240
BstDEI	CTNAG	4 cut(s)	11, 35, 392, 474
BstF5I	GGATG	2 cut(s)	53, 259
BstHHI	GCGC	2 cut(s)	155, 366
BstKTI	GATC	2 cut(s)	33, 441
BstMAI	GTCTC	1 cut(s)	666
BstMBI	GATC	2 cut(s)	30, 438
BstMCI	CGRYCG	2 cut(s)	142, 231
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 325, 596, 627
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	3 cut(s)	186, 526, 586
BstZI	CGGCCG	2 cut(s)	139, 228
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	141, 230, 319
BtsCI	GGATG	2 cut(s)	53, 259
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	225, 240
CaiI	CAGNNNCTG	1 cut(s)	220
CfoI	GCGC	2 cut(s)	155, 366
Cfr13I	GGNCC	1 cut(s)	317
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	3 cut(s)	28, 287, 361
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	4 cut(s)	11, 35, 392, 474
DpnI	GATC	2 cut(s)	32, 440
DpnII	GATC	2 cut(s)	30, 438
EaeI	YGGCCR	2 cut(s)	139, 228
EagI	CGGCCG	2 cut(s)	139, 228
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Ecl136II	GAGCTC	1 cut(s)	242
EclXI	CGGCCG	2 cut(s)	139, 228
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	244
Eco52I	CGGCCG	2 cut(s)	139, 228
Eco53kI	GAGCTC	1 cut(s)	242
Eco81I	CCTNAGG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	3 cut(s)	31, 290, 364
FaiI	YATR	4 cut(s)	29, 288, 362, 549
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	3 cut(s)	27, 286, 360
FauI	CCCGC	1 cut(s)	170
Fnu4HI	GCNGC	6 cut(s)	156, 172, 175, 228, 540, 600
FokI	GGATG	2 cut(s)	40, 246
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	6 cut(s)	156, 172, 175, 228, 540, 600
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	2 cut(s)	154, 365
GluI	GCNGC	6 cut(s)	156, 172, 175, 228, 540, 600
GsuI	CTGGAG	2 cut(s)	342, 533
HaeIII	GGCC	3 cut(s)	141, 230, 319
HapII	CCGG	2 cut(s)	114, 168
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	2 cut(s)	155, 366
Hin1II	CATG	3 cut(s)	31, 290, 364
Hin6I	GCGC	2 cut(s)	153, 364
HinP1I	GCGC	2 cut(s)	153, 364
HincII	GTYRAC	2 cut(s)	211, 337
HindII	GTYRAC	2 cut(s)	211, 337
HinfI	GANTC	7 cut(s)	117, 123, 129, 135, 164, 433, 478
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	2 cut(s)	114, 168
Hpy166II	GTNNAC	4 cut(s)	211, 337, 346, 358
Hpy188I	TCNGA	9 cut(s)	12, 122, 128, 134, 163, 438, 483, 568, 646
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	4 cut(s)	211, 337, 346, 358
HpyAV	CCTTC	2 cut(s)	78, 628
HpyCH4III	ACNGT	2 cut(s)	295, 677
HpyCH4V	TGCA	2 cut(s)	223, 421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 325, 596, 627
HpyF3I	CTNAG	4 cut(s)	11, 35, 392, 474
Hsp92II	CATG	3 cut(s)	31, 290, 364
HspAI	GCGC	2 cut(s)	153, 364
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	30, 438
LguI	GCTCTTC	1 cut(s)	564
LmnI	GCTCC	4 cut(s)	101, 222, 235, 454
Lsp1109I	GCAGC	3 cut(s)	186, 526, 586
LweI	GCATC	2 cut(s)	496, 526
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	32, 440
MbiI	CCGCTC	1 cut(s)	96
MboI	GATC	2 cut(s)	30, 438
MboII	GAAGA	7 cut(s)	442, 459, 515, 581, 592, 595, 675
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	2 cut(s)	518, 528
MlyI	GAGTC	2 cut(s)	158, 472
MseI	TTAA	2 cut(s)	336, 624
MslI	CAYNNNNRTG	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	177
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	2 cut(s)	114, 168
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	4 cut(s)	248, 325, 596, 627
NdeII	GATC	2 cut(s)	30, 438
NlaIII	CATG	3 cut(s)	31, 290, 364
NlaIV	GGNNCC	1 cut(s)	112
NmeAIII	GCCGAG	3 cut(s)	175, 227, 256
NspI	RCATGY	1 cut(s)	364
OliI	CACNNNNGTG	1 cut(s)	353
PciSI	GCTCTTC	1 cut(s)	564
PfeI	GAWTC	5 cut(s)	117, 123, 129, 135, 433
PkrI	GCNGC	6 cut(s)	157, 173, 176, 229, 541, 601
PleI	GAGTC	2 cut(s)	158, 472
PpsI	GAGTC	2 cut(s)	158, 472
Psp124BI	GAGCTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	244
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	2 cut(s)	336, 624
SatI	GCNGC	6 cut(s)	156, 172, 175, 228, 540, 600
Sau3AI	GATC	2 cut(s)	30, 438
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	2 cut(s)	158, 472
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	9 cut(s)	189, 210, 219, 244, 357, 459, 559, 592, 639
SfaNI	GCATC	2 cut(s)	496, 526
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	2 cut(s)	518, 528
SsiI	CCGC	6 cut(s)	5, 94, 156, 171, 177, 227
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	1 cut(s)	281
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	295, 677
TasI	AATT	2 cut(s)	518, 528
TatI	WGTACW	1 cut(s)	88
TauI	GCSGC	3 cut(s)	158, 174, 230
TfiI	GAWTC	5 cut(s)	117, 123, 129, 135, 433
Tru1I	TTAA	2 cut(s)	336, 624
Tru9I	TTAA	2 cut(s)	336, 624
TseI	GCWGC	3 cut(s)	174, 539, 599
TspDTI	ATGAA	1 cut(s)	60
TspGWI	ACGGA	1 cut(s)	137
Vha464I	CTTAAG	1 cut(s)	623
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	1 cut(s)	364
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.