Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008388

Physical Location & Seq

Genomic Coordinates Reverse (-)

51444787 .. 51446735

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003665

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGGTTCTGAGAACCACAACAGCCATGATGCTCAGGCATTTCTCTCAGCCATCCATGTTCTTCTTACCATCAAGCCCCACCTCTCTGGTTCGCTCCACTGCCGGAATCAGCATCCGGTGCGCCGCCTCCGACTCCGGCGCCGGGGGGAAGAAGGTATCCGCTCGGCTCTCTCAGGTCAACCAGCTCTTGCAAGAAGCCGAGGAGCGTGCTCTCTCCGCCGATAACCTCCCCGCCCCTAAAATCACATTAGATCATGTAACTGTGAGTTTTGCAAGAAGTGGAGGACCTGGAGGACAGAATGTGAACAAATTGAACACTAAGGTGGACATGCGATTCAATGTTAAAAATGCGTATTGGCTAAGTGACAGGATCAAGGAGAGGATTTTGCAAATGGAGAAGAACCGAATCAACAAGGATGGGGAGCTTGTGATTTCGTCAACCAGGACTCGTACACAGAAGGGTAACATTGAAGATGCTTTGGAGAAACTTCAGGCAATTATCGATGCTGCTTCATATGTTCCACCTCCTCCCTCAGAAGAGCAAAAGAAGAAGATTGCTAAAATGGCTGCTATTGGAGAACAGAAACGCCTCAAAAGCAAGAAGGTACTTTCAGACAAGAAGGCATTTAGAAGAACTCGTGACAGTTGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0003824 GO:0004045 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006414 GO:0006415 GO:0006417 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0015934 GO:0016043 GO:0016150 GO:0016787 GO:0016788 GO:0019222 GO:0019538 GO:0022411 GO:0031323 GO:0031326 GO:0031974 GO:0032268 GO:0032543 GO:0032984 GO:0032991 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0052689 GO:0060255 GO:0065007 GO:0070013 GO:0070126 GO:0071704 GO:0071840 GO:0072344 GO:0080090 GO:0097159 GO:0098798 GO:0140053 GO:0140098 GO:0140101 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RF-1

Protein Analysis

219

Amino Acids

24.16

Weight (kDa)

10.18

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RF-1	PF00472	81 - 203	6.3e-16	RF-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62850 AT1G62850 AT1G62850
fragaria_vesca	FvH4_5g00690 FvH4_5g00690 FvH4_5g00690
malus_domestica	MD04G1079400.v1.1
prunus_persica	Prupe.5G079700_v2.0.a1 Prupe.5G079700_v2.0.a1 Prupe.5G079700_v2.0.a1
pyrus_communis	pycom04g07120
rosa_chinensis	RchiOBHm_Chr7g0201521
rosa_laevigata	RLG00000003665
rosa_multiflora	Rmu_sc0002046.1_g000001 Rmu_sc0017656.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255250
rosa_rugosa	Rorug07G0064600 Rorug07G0064700
rosa_samantha	Rh7AG191200 Rh7BG193500 Rh7CG202400 Rh7DG196400
rosa_wichuraiana	Rw7G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AccBSI	CCGCTC	1 cut(s)	164
AciI	CCGC	5 cut(s)	5, 126, 162, 219, 234
AclWI	GGATC	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	2 cut(s)	454, 609
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	3 cut(s)	316, 340, 473
AjnI	CCWGG	2 cut(s)	289, 443
AleI	CACNNNNGTG	1 cut(s)	323
AluBI	AGCT	2 cut(s)	187, 427
AluI	AGCT	2 cut(s)	187, 427
Alw21I	GWGCWC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	509, 569
AspLEI	GCGC	2 cut(s)	125, 143
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	140
BauI	CACGAG	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	496, 556
BccI	CCATC	3 cut(s)	61, 79, 413
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	2 cut(s)	291, 445
BciVI	GTATCC	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	3 cut(s)	126, 510, 570
BlsI	GCNGC	3 cut(s)	127, 511, 571
Bme1390I	CCNGG	3 cut(s)	145, 291, 445
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	3 cut(s)	145, 291, 445
BmsI	GCATC	4 cut(s)	21, 123, 466, 496
BpmI	CTGGAG	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	145
Bsa29I	ATCGAT	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	144, 201
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	291, 445
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	2 cut(s)	144, 201
BseGI	GGATG	3 cut(s)	53, 114, 424
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	4 cut(s)	49, 62, 188, 549
BseRI	GAGGAG	2 cut(s)	218, 519
BseXI	GCAGC	2 cut(s)	496, 556
BshNI	GGYRCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	4 cut(s)	105, 118, 138, 144
BslI	CCNNNNNNNGG	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	253, 372
BspACI	CCGC	5 cut(s)	5, 126, 162, 219, 234
BspCNI	CTCAG	4 cut(s)	48, 61, 187, 548
BspDI	ATCGAT	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	380
BspQI	GCTCTTC	1 cut(s)	534
BspT107I	GGYRCC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	144, 201
BssMI	GATC	2 cut(s)	253, 372
BssNI	GRCGYC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	639
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	2 cut(s)	291, 445
Bst4CI	ACNGT	2 cut(s)	265, 647
Bst6I	CTCTTC	1 cut(s)	534
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	7 cut(s)	11, 35, 48, 174, 321, 362, 535
BstF5I	GGATG	3 cut(s)	53, 114, 424
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	125, 143
BstKTI	GATC	2 cut(s)	256, 375
BstMBI	GATC	2 cut(s)	253, 372
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 218, 566, 597
BstNI	CCWGG	2 cut(s)	291, 445
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	3 cut(s)	143, 289, 443
BstV1I	GCAGC	2 cut(s)	496, 556
BstXI	CCANNNNNNTGG	1 cut(s)	88
Bsu15I	ATCGAT	1 cut(s)	504
BsuI	GTATCC	1 cut(s)	169
BsuTUI	ATCGAT	1 cut(s)	504
BtsCI	GGATG	3 cut(s)	53, 114, 424
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	2 cut(s)	125, 143
Cfr13I	GGNCC	1 cut(s)	287
ClaI	ATCGAT	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	453, 608
CviAII	CATG	4 cut(s)	28, 58, 257, 331
CviJI	RGCY	9 cut(s)	26, 52, 78, 169, 187, 200, 361, 427, 569
CviKI_1	RGCY	9 cut(s)	26, 52, 78, 169, 187, 200, 361, 427, 569
CviQI	GTAC	2 cut(s)	453, 608
DdeI	CTNAG	7 cut(s)	11, 35, 48, 174, 321, 362, 535
DinI	GGCGCC	1 cut(s)	142
DpnI	GATC	2 cut(s)	255, 374
DpnII	GATC	2 cut(s)	253, 372
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
EciI	GGCGGA	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	476
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	289, 443
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
FaeI	CATG	4 cut(s)	31, 61, 260, 334
FaiI	YATR	6 cut(s)	29, 59, 258, 332, 517, 519
FatI	CATG	4 cut(s)	27, 57, 256, 330
FauI	CCCGC	1 cut(s)	241
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	3 cut(s)	126, 510, 570
FokI	GGATG	3 cut(s)	40, 101, 431
Fsp4HI	GCNGC	3 cut(s)	126, 510, 570
GlaI	GCGC	2 cut(s)	124, 142
GluI	GCNGC	3 cut(s)	126, 510, 570
GsuI	CTGGAG	1 cut(s)	312
HaeII	RGCGCY	1 cut(s)	144
HapII	CCGG	4 cut(s)	105, 118, 138, 144
HhaI	GCGC	2 cut(s)	125, 143
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	4 cut(s)	31, 61, 260, 334
Hin6I	GCGC	2 cut(s)	123, 141
HinP1I	GCGC	2 cut(s)	123, 141
HincII	GTYRAC	2 cut(s)	181, 441
HindII	GTYRAC	2 cut(s)	181, 441
HinfI	GANTC	5 cut(s)	108, 134, 336, 408, 448
HpaII	CCGG	4 cut(s)	105, 118, 138, 144
Hpy166II	GTNNAC	5 cut(s)	181, 307, 328, 441, 455
Hpy188I	TCNGA	4 cut(s)	12, 133, 538, 616
Hpy188III	TCNNGA	1 cut(s)	641
Hpy8I	GTNNAC	5 cut(s)	181, 307, 328, 441, 455
HpyAV	CCTTC	4 cut(s)	148, 454, 598, 616
HpyCH4III	ACNGT	2 cut(s)	265, 647
HpyCH4V	TGCA	3 cut(s)	193, 275, 391
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 218, 566, 597
HpyF3I	CTNAG	7 cut(s)	11, 35, 48, 174, 321, 362, 535
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	31, 61, 260, 334
HspAI	GCGC	2 cut(s)	123, 141
KasI	GGCGCC	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	253, 372
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	3 cut(s)	101, 205, 424
Lsp1109I	GCAGC	2 cut(s)	496, 556
LweI	GCATC	4 cut(s)	21, 123, 466, 496
MaeIII	GTNAC	4 cut(s)	259, 365, 464, 641
MalI	GATC	2 cut(s)	255, 374
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	2 cut(s)	253, 372
MboII	GAAGA	8 cut(s)	55, 163, 412, 485, 551, 562, 565, 645
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	2 cut(s)	311, 498
Mly113I	GGCGCC	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	128, 442
MmeI	TCCRAC	1 cut(s)	156
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	323
MspI	CCGG	4 cut(s)	105, 118, 138, 144
MspR9I	CCNGG	3 cut(s)	145, 291, 445
MvaI	CCWGG	2 cut(s)	291, 445
MwoI	GCNNNNNNNGC	4 cut(s)	120, 218, 566, 597
NarI	GGCGCC	1 cut(s)	141
NciI	CCSGG	1 cut(s)	145
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	2 cut(s)	253, 372
NlaIII	CATG	4 cut(s)	31, 61, 260, 334
NlaIV	GGNNCC	1 cut(s)	142
NmeAIII	GCCGAG	2 cut(s)	145, 226
NmuCI	GTSAC	2 cut(s)	365, 641
NspI	RCATGY	1 cut(s)	334
OliI	CACNNNNGTG	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	534
PfeI	GAWTC	3 cut(s)	108, 336, 408
PkrI	GCNGC	3 cut(s)	127, 511, 571
PleI	GAGTC	2 cut(s)	128, 442
PluTI	GGCGCC	1 cut(s)	144
PpsI	GAGTC	2 cut(s)	128, 442
PpuMI	RGGWCCY	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	289, 443
PspGI	CCWGG	2 cut(s)	289, 443
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	287
PspPPI	RGGWCCY	1 cut(s)	287
RsaI	GTAC	2 cut(s)	454, 609
RsaNI	GTAC	2 cut(s)	453, 608
RseI	CAYNNNNRTG	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	3 cut(s)	126, 510, 570
Sau3AI	GATC	2 cut(s)	253, 372
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	2 cut(s)	128, 442
ScrFI	CCNGG	3 cut(s)	145, 291, 445
SduI	GDGCHC	1 cut(s)	214
SfaNI	GCATC	4 cut(s)	21, 123, 466, 496
SfoI	GGCGCC	1 cut(s)	142
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse9I	AATT	2 cut(s)	311, 498
SsiI	CCGC	5 cut(s)	5, 126, 162, 219, 234
SspDI	GGCGCC	1 cut(s)	140
StyD4I	CCNGG	3 cut(s)	143, 289, 443
TaaI	ACNGT	2 cut(s)	265, 647
TaqI	TCGA	1 cut(s)	504
TasI	AATT	2 cut(s)	311, 498
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	3 cut(s)	108, 336, 408
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	2 cut(s)	365, 641
TseI	GCWGC	2 cut(s)	509, 569
Tsp45I	GTSAC	2 cut(s)	365, 641
TspDTI	ATGAA	1 cut(s)	504
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	287
XceI	RCATGY	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.