FvH4_5g01841

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015617
Physical Location & Seq
Forward (+)
1158916 .. 1159737
822 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01841.t1

Sequence Viewer

Length: 432 bp
ATGCCTCAAGGAACCCTAGATGTTCATCTTATGAATGCCAAGGGTCTAAAAAACACAGAGTTCTTTGGTAAGATGGATCCATACGTGATCATCCAGTGCAAAAACCAGGAGAAAAGGAGCAAAGTGGCAACATCACAGGGGTCTAAGCCAGTATGGAATGAGAAGTTTGTTTTCCGAGTAACTGAGGGTGTTACTGAACTCAAATTGACGATCATGGACAAGGACACTGCTGTCAGGGATGATTTTGTAGGAGAGTTAAGCATTCCACTAAAAACACTATTCCAAGAAGGAAAGTTCCCACCAATGAAATACAATGTATTAAGGAACAAAAAATACTACGGAGAGATTAAAGTTGGCCTCAGCTTCACTCCTTCAGTACAGCGCGATATTTCTGAAGAATCCTTTGGCGGATGGAAAGAGTCTTCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

144

Amino Acids

16.32

Weight (kDa)

9.12

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 96 9.8e-25 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015617)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01841
malus_domestica MD14G1098100.v1.1
prunus_persica Prupe.5G094600_v2.0.a1
pyrus_communis pycom14g09620
rosa_chinensis RchiOBHm_Chr7g0198691
rosa_laevigata RLG00000003845
rosa_roxburghii Rroxscaffold_3G00257500
rosa_rugosa Rorug07G0049500 Rorug07G0049600 Rorug07G0049700 Rorug07G0049800
rosa_samantha Rh7AG173200 Rh7BG176600 Rh7CG182500 Rh7DG175900
rosa_wichuraiana Rw7G015170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AccII CGCG 1 cut(s) 384
AciI CCGC 1 cut(s) 408
AclWI GGATC 2 cut(s) 71, 84
AcuI CTGAAG 2 cut(s) 357, 414
AfaI GTAC 1 cut(s) 378
AjnI CCWGG 1 cut(s) 105
AjuI GAANNNNNNNTTGG 2 cut(s) 387, 419
AluBI AGCT 1 cut(s) 363
AluI AGCT 1 cut(s) 363
AlwI GGATC 2 cut(s) 71, 84
AoxI GGCC 1 cut(s) 355
AspLEI GCGC 1 cut(s) 384
BamHI GGATCC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 414
BbvCI CCTCAGC 1 cut(s) 359
BccI CCATC 2 cut(s) 67, 405
BciT130I CCWGG 1 cut(s) 107
BclI TGATCA 1 cut(s) 87
BfaI CTAG 2 cut(s) 17, 430
Bme1390I CCNGG 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 13, 78
BmrFI CCNGG 1 cut(s) 107
BpiI GAAGAC 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 359
BsaAI YACGTR 1 cut(s) 85
BsaBI GATNNNNATC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 39
Bse1I ACTGG 2 cut(s) 94, 149
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 3 cut(s) 90, 244, 416
BseJI GATNNNNATC 1 cut(s) 24
BseMII CTCAG 2 cut(s) 174, 373
BseNI ACTGG 2 cut(s) 94, 149
Bsh1236I CGCG 1 cut(s) 384
BshFI GGCC 1 cut(s) 357
BsmI GAATGC 2 cut(s) 40, 261
BsnI GGCC 1 cut(s) 357
Bsp143I GATC 3 cut(s) 76, 87, 210
BspACI CCGC 1 cut(s) 408
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 2 cut(s) 175, 372
BspFNI CGCG 1 cut(s) 384
BspLI GGNNCC 2 cut(s) 13, 78
BspPI GGATC 2 cut(s) 71, 84
BsrI ACTGG 2 cut(s) 94, 149
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 3 cut(s) 76, 87, 210
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 107
BstBAI YACGTR 1 cut(s) 85
BstDEI CTNAG 3 cut(s) 144, 183, 359
BstF5I GGATG 3 cut(s) 90, 244, 416
BstFNI CGCG 1 cut(s) 384
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 3 cut(s) 79, 90, 213
BstMBI GATC 3 cut(s) 76, 87, 210
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
BstUI CGCG 1 cut(s) 384
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 1 cut(s) 357
BtsCI GGATG 3 cut(s) 90, 244, 416
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 101, 225
CfoI GCGC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 377
CviAII CATG 1 cut(s) 214
CviJI RGCY 3 cut(s) 148, 357, 363
CviKI_1 RGCY 3 cut(s) 148, 357, 363
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 3 cut(s) 144, 183, 359
DpnI GATC 3 cut(s) 78, 89, 212
DpnII GATC 3 cut(s) 76, 87, 210
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
EciI GGCGGA 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 39
Eco57I CTGAAG 2 cut(s) 357, 414
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 217
FaiI YATR 4 cut(s) 32, 82, 154, 215
FatI CATG 1 cut(s) 213
FbaI TGATCA 1 cut(s) 87
FokI GGATG 3 cut(s) 77, 251, 423
FspBI CTAG 2 cut(s) 17, 430
GlaI GCGC 1 cut(s) 383
HaeIII GGCC 1 cut(s) 357
HhaI GCGC 1 cut(s) 384
Hin1II CATG 1 cut(s) 217
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HinfI GANTC 2 cut(s) 398, 419
Hpy188I TCNGA 2 cut(s) 176, 394
HpyAV CCTTC 2 cut(s) 281, 381
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 99
HpyF3I CTNAG 3 cut(s) 144, 183, 359
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 1 cut(s) 217
HspAI GCGC 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 3 cut(s) 76, 87, 210
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 6 cut(s) 92, 107, 119, 122, 162, 220
MaeI CTAG 2 cut(s) 17, 430
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 178, 190
MalI GATC 3 cut(s) 78, 89, 212
MboI GATC 3 cut(s) 76, 87, 210
MboII GAAGA 2 cut(s) 407, 414
MflI RGATCY 1 cut(s) 76
MluCI AATT 1 cut(s) 203
MlyI GAGTC 1 cut(s) 428
MnlI CCTC 3 cut(s) 15, 178, 368
MseI TTAA 3 cut(s) 257, 320, 348
MspR9I CCNGG 1 cut(s) 107
Mva1269I GAATGC 2 cut(s) 40, 261
MvaI CCWGG 1 cut(s) 107
MvnI CGCG 1 cut(s) 384
NdeII GATC 3 cut(s) 76, 87, 210
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 2 cut(s) 13, 78
PctI GAATGC 2 cut(s) 40, 261
PfeI GAWTC 1 cut(s) 398
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
Ppu21I YACGTR 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 13, 78
PsrI GAACNNNNNNTAC 2 cut(s) 317, 349
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
SaqAI TTAA 3 cut(s) 257, 320, 348
Sau3AI GATC 3 cut(s) 76, 87, 210
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 107
SetI ASST 2 cut(s) 87, 365
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 1 cut(s) 203
SsiI CCGC 1 cut(s) 408
SspMI CTAG 2 cut(s) 17, 430
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 1 cut(s) 39
TaiI ACGT 1 cut(s) 87
TasI AATT 1 cut(s) 203
TatI WGTACW 1 cut(s) 376
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 3 cut(s) 257, 320, 348
Tru9I TTAA 3 cut(s) 257, 320, 348
TscAI CASTG 2 cut(s) 101, 232
TspDTI ATGAA 3 cut(s) 14, 47, 320
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 2 cut(s) 101, 232
XspI CTAG 2 cut(s) 17, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.