Rorug07G0049800

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015617
Physical Location & Seq
Reverse (-)
3569638 .. 3571201
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0049800.1

Sequence Viewer

Length: 1398 bp
ATGGAAGAAGGACAGCTATCCCGCTCTAATCTGGAAAGTTCAGATCAAGAAAATGCTATCCATATGCTGCTTGTTCCATACCCTTTACAAGGACATATTACACCATTCATAAAGTTGGCATACCTAATTTCTGGTCATGGAATCATGGTCACACTTGTCATAACAGAGTTTGCACATGCACGTATGATGGCTGCAGAGCCAGAATTGGATAATGAGCGGTATAAGGTCAGGTACATCACAGTTCCTGATGGATTGTCAGAAGATGATGCACGGAATGATGAAGGTAAGCTGGCTCAGAGTATATCCAAAGTCATGCCTGGTCATTTGAGAGAAGTGTTAGAGAAGGTCAACATGGAGGGTAATCGGGTGACTTGTGTCATAGCTGATCCAATGTTTGGGTGGGCTTTGGAGATTGCTGAGACGATGAAGGTCAAGTTGGCAATGTTCTGGCCTTCTGCCCCAGGAATTTTGGCCTTGATACTTAACATTCCAAAGCTTATTGAGGATGGGATTATTGACACAAAGGGATCTTCGAAAATTGATGGGAAGGTTCAACTGTCACCAGACCTGCCACCTCTGACTAGTACCGACTTCCTGTGGAATTTTTCAGGAAACCAGTCTGCCGAGGCCATGTTCCAATATTTCTTAGGCATTCAACAAAACATGAAGCGTTCTGCCTGGCTTCTGTGCAACTGGTTTCATGAGCTTAACCCCCTTGTTGGTAATTTAGTCCCACACATGTTTCCAGTGGGCCCATTACTTGCAAATGGAAAACCTGCTGCAAACCTTTGGCCAGAGGACTCGACTTGCTTGAGCTGGCTCGACAAACAACCTGCTAGATCAGTTATTTATGTTGCATTTGGAAGCATCTCAGTATTCAGCCAGCACCAGATGGATGAGTTAGCATTAGGCCTTGAACTTGTTGGTCGACCATTCTTATGGGTTAAACGGTCAGACCTCATCAAAGGCGGTTCTTCCAAATACCCAAATGGGTATGAAGAGAGAGTGGCGAACCAAGGCAAGATTGTTCAGTGGGCACCCCAAGAAAAGGTGTTGGCTCACCCATCTATTGCTTGTTTCCTGACTCATTGTGGTTGGAACTCGACCATGGATGGCTTACGCATGGGCGTCCCCTTCCTCTGTTGGCCTTACTTTGCCGATCAGTTTTACAACCGGAGTTGCATCTGTAATGGTTATAAAGTTGGTCTGCCCTTAAGCCCAGATGAATATGGAATTATTACAAGGCATGAAATCAGAAGGAAATTGGATAGTTTGGTTGCCGATGATGGTATAAGAGCCAATGCATTAAAGCTCAAAGAAATGGCTGAACAGAGTATCAATGAAGGAGGATCTTCTGTAAGGAATTTGGACAACTTCATTCTACAGATGAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

465

Amino Acids

52.05

Weight (kDa)

5.72

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 267 - 440 6.1e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015617)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01841
malus_domestica MD14G1098100.v1.1
prunus_persica Prupe.5G094600_v2.0.a1
pyrus_communis pycom14g09620
rosa_chinensis RchiOBHm_Chr7g0198691
rosa_laevigata RLG00000003845
rosa_roxburghii Rroxscaffold_3G00257500
rosa_rugosa Rorug07G0049500 Rorug07G0049600 Rorug07G0049700 Rorug07G0049800
rosa_samantha Rh7AG173200 Rh7BG176600 Rh7CG182500 Rh7DG175900
rosa_wichuraiana Rw7G015170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1197
Acc36I ACCTGC 3 cut(s) 576, 784, 841
AccB1I GGYRCC 1 cut(s) 1036
AccB7I CCANNNNNTGG 1 cut(s) 395
AccBSI CCGCTC 2 cut(s) 24, 217
AccI GTMKAC 1 cut(s) 928
AciI CCGC 3 cut(s) 22, 217, 969
AclWI GGATC 3 cut(s) 380, 535, 1357
AcoI YGGCCR 1 cut(s) 791
AcsI RAATTY 3 cut(s) 465, 601, 1363
AcyI GRCGYC 1 cut(s) 1128
AfaI GTAC 2 cut(s) 233, 586
AfiI CCNNNNNNNGG 4 cut(s) 89, 395, 719, 1048
AflII CTTAAG 1 cut(s) 1213
AflIII ACRYGT 1 cut(s) 738
AgsI TTSAA 3 cut(s) 554, 656, 917
AhlI ACTAGT 1 cut(s) 581
AjnI CCWGG 3 cut(s) 316, 460, 677
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 7 cut(s) 16, 289, 383, 496, 706, 816, 1312
AluI AGCT 7 cut(s) 16, 289, 383, 496, 706, 816, 1312
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 3 cut(s) 380, 535, 1357
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 7 cut(s) 449, 471, 627, 751, 791, 910, 1145
ApaI GGGCCC 1 cut(s) 755
ApeKI GCWGC 3 cut(s) 67, 191, 779
ApoI RAATTY 3 cut(s) 465, 601, 1363
AspS9I GGNCC 2 cut(s) 751, 752
AsuHPI GGTGA 3 cut(s) 379, 552, 1052
AsuII TTCGAA 1 cut(s) 533
BaeGI GKGCMC 2 cut(s) 755, 1039
BalI TGGCCA 1 cut(s) 793
BanI GGYRCC 1 cut(s) 1036
BanII GRGCYC 1 cut(s) 755
BbvI GCAGC 3 cut(s) 54, 178, 766
BccI CCATC 8 cut(s) 181, 242, 500, 536, 886, 1072, 1106, 1280
BciT130I CCWGG 3 cut(s) 318, 462, 679
BcoDI GTCTC 1 cut(s) 413
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 2 cut(s) 582, 837
BfmI CTRYAG 2 cut(s) 192, 1382
BfrI CTTAAG 1 cut(s) 1213
BfuAI ACCTGC 3 cut(s) 576, 784, 841
BisI GCNGC 3 cut(s) 68, 192, 780
BlsI GCNGC 3 cut(s) 69, 193, 781
Bme1390I CCNGG 3 cut(s) 318, 462, 679
BmgT120I GGNCC 2 cut(s) 751, 752
BmiI GGNNCC 2 cut(s) 753, 1038
BmrFI CCNGG 3 cut(s) 318, 462, 679
BmsI GCATC 3 cut(s) 256, 876, 1191
BoxI GACNNNNGTC 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 533
BpuEI CTTGAG 1 cut(s) 832
BsaAI YACGTR 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 1128
BsaJI CCNNGG 4 cut(s) 460, 624, 1015, 1107
BsaWI WCCGGW 1 cut(s) 1173
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 395, 719, 1048
Bse1I ACTGG 3 cut(s) 616, 698, 746
Bse3DI GCAATG 1 cut(s) 447
BseBI CCWGG 3 cut(s) 318, 462, 679
BseDI CCNNGG 4 cut(s) 460, 624, 1015, 1107
BseGI GGATG 3 cut(s) 511, 901, 1117
BseLI CCNNNNNNNGG 4 cut(s) 89, 395, 719, 1048
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 3 cut(s) 308, 408, 885
BseNI ACTGG 3 cut(s) 616, 698, 746
BseSI GKGCMC 2 cut(s) 755, 1039
BseXI GCAGC 3 cut(s) 54, 178, 766
BshFI GGCC 7 cut(s) 451, 473, 629, 753, 793, 912, 1147
BshNI GGYRCC 1 cut(s) 1036
BsiSI CCGG 1 cut(s) 1174
BslFI GGGAC 2 cut(s) 716, 1115
BslI CCNNNNNNNGG 4 cut(s) 89, 395, 719, 1048
BsmAI GTCTC 1 cut(s) 413
BsmBI CGTCTC 1 cut(s) 413
BsmFI GGGAC 2 cut(s) 716, 1115
BsmI GAATGC 1 cut(s) 651
BsnI GGCC 7 cut(s) 451, 473, 629, 753, 793, 912, 1147
Bsp119I TTCGAA 1 cut(s) 533
Bsp120I GGGCCC 1 cut(s) 751
Bsp1286I GDGCHC 2 cut(s) 755, 1039
Bsp143I GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
Bsp19I CCATGG 1 cut(s) 1107
BspACI CCGC 3 cut(s) 22, 217, 969
BspANI GGCC 7 cut(s) 451, 473, 629, 753, 793, 912, 1147
BspCNI CTCAG 3 cut(s) 307, 409, 884
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 2 cut(s) 753, 1038
BspMAI CTGCAG 1 cut(s) 196
BspMI ACCTGC 3 cut(s) 576, 784, 841
BspPI GGATC 3 cut(s) 380, 535, 1357
BspT104I TTCGAA 1 cut(s) 533
BspT107I GGYRCC 1 cut(s) 1036
BspTI CTTAAG 1 cut(s) 1213
BsrBI CCGCTC 2 cut(s) 24, 217
BsrDI GCAATG 1 cut(s) 447
BsrI ACTGG 3 cut(s) 616, 698, 746
BssECI CCNNGG 4 cut(s) 460, 624, 1015, 1107
BssMI GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
BssNI GRCGYC 1 cut(s) 1128
BssT1I CCWWGG 2 cut(s) 1015, 1107
Bst2UI CCWGG 3 cut(s) 318, 462, 679
Bst4CI ACNGT 3 cut(s) 241, 558, 951
Bst6I CTCTTC 1 cut(s) 993
BstACI GRCGYC 1 cut(s) 1128
BstAFI CTTAAG 1 cut(s) 1213
BstBAI YACGTR 1 cut(s) 182
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 3 cut(s) 291, 818, 884
BstDEI CTNAG 4 cut(s) 294, 417, 646, 871
BstDSI CCRYGG 1 cut(s) 1107
BstENI CCTNNNNNAGG 1 cut(s) 87
BstF5I GGATG 3 cut(s) 511, 901, 1117
BstKTI GATC 6 cut(s) 46, 388, 530, 842, 1162, 1352
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
BstNI CCWGG 3 cut(s) 318, 462, 679
BstNSI RCATGY 2 cut(s) 179, 742
BstPAI GACNNNNGTC 1 cut(s) 374
BstSCI CCNGG 3 cut(s) 316, 460, 677
BstSFI CTRYAG 2 cut(s) 192, 1382
BstSLI GKGCMC 2 cut(s) 755, 1039
BstV1I GCAGC 3 cut(s) 54, 178, 766
BstX2I RGATCY 2 cut(s) 527, 1349
BstXI CCANNNNNNTGG 1 cut(s) 939
BstYI RGATCY 2 cut(s) 527, 1349
BsuRI GGCC 7 cut(s) 451, 473, 629, 753, 793, 912, 1147
BtgI CCRYGG 1 cut(s) 1107
BtsCI GGATG 3 cut(s) 511, 901, 1117
BtsIMutI CAGTG 2 cut(s) 753, 1037
BveI ACCTGC 3 cut(s) 576, 784, 841
Cac8I GCNNGC 3 cut(s) 291, 818, 884
CaiI CAGNNNCTG 1 cut(s) 245
CciI TCATGA 1 cut(s) 700
Cfr13I GGNCC 2 cut(s) 751, 752
CseI GACGC 1 cut(s) 1117
Csp6I GTAC 2 cut(s) 232, 585
CviQI GTAC 2 cut(s) 232, 585
DdeI CTNAG 4 cut(s) 294, 417, 646, 871
DpnI GATC 6 cut(s) 45, 387, 529, 841, 1161, 1351
DpnII GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
EaeI YGGCCR 1 cut(s) 791
Eam1104I CTCTTC 1 cut(s) 993
EarI CTCTTC 1 cut(s) 993
Eco130I CCWWGG 2 cut(s) 1015, 1107
Eco147I AGGCCT 1 cut(s) 912
Eco24I GRGCYC 1 cut(s) 755
EcoNI CCTNNNNNAGG 1 cut(s) 87
EcoRII CCWGG 3 cut(s) 316, 460, 677
EcoT14I CCWWGG 2 cut(s) 1015, 1107
EcoT22I ATGCAT 1 cut(s) 1306
EcoT38I GRGCYC 1 cut(s) 755
ErhI CCWWGG 2 cut(s) 1015, 1107
Esp3I CGTCTC 1 cut(s) 413
FaqI GGGAC 2 cut(s) 716, 1115
FauI CCCGC 1 cut(s) 29
FauNDI CATATG 1 cut(s) 63
FblI GTMKAC 1 cut(s) 928
Fnu4HI GCNGC 3 cut(s) 68, 192, 780
FokI GGATG 3 cut(s) 518, 908, 1124
FriOI GRGCYC 1 cut(s) 755
Fsp4HI GCNGC 3 cut(s) 68, 192, 780
FspBI CTAG 2 cut(s) 582, 837
GluI GCNGC 3 cut(s) 68, 192, 780
HaeIII GGCC 7 cut(s) 451, 473, 629, 753, 793, 912, 1147
HapII CCGG 1 cut(s) 1174
HgaI GACGC 1 cut(s) 1117
Hin1I GRCGYC 1 cut(s) 1128
HincII GTYRAC 2 cut(s) 349, 929
HindII GTYRAC 2 cut(s) 349, 929
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 3 cut(s) 141, 800, 1084
HpaII CCGG 1 cut(s) 1174
HphI GGTGA 3 cut(s) 379, 552, 1052
Hpy166II GTNNAC 2 cut(s) 349, 929
Hpy188I TCNGA 6 cut(s) 43, 259, 297, 579, 955, 1256
Hpy188III TCNNGA 6 cut(s) 32, 47, 245, 609, 701, 1081
Hpy8I GTNNAC 2 cut(s) 349, 929
HpyAV CCTTC 8 cut(s) 275, 337, 421, 462, 541, 1144, 1251, 1337
HpyCH4III ACNGT 3 cut(s) 241, 558, 951
HpyCH4IV ACGT 1 cut(s) 181
HpyF3I CTNAG 4 cut(s) 294, 417, 646, 871
HpySE526I ACGT 1 cut(s) 181
Hsp92I GRCGYC 1 cut(s) 1128
Kzo9I GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
Lsp1109I GCAGC 3 cut(s) 54, 178, 766
LweI GCATC 3 cut(s) 256, 876, 1191
MaeI CTAG 2 cut(s) 582, 837
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 3 cut(s) 148, 367, 558
MalI GATC 6 cut(s) 45, 387, 529, 841, 1161, 1351
MbiI CCGCTC 2 cut(s) 24, 217
MboI GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
MboII GAAGA 6 cut(s) 17, 272, 522, 966, 1010, 1344
MflI RGATCY 2 cut(s) 527, 1349
MhlI GDGCHC 2 cut(s) 755, 1039
MlsI TGGCCA 1 cut(s) 793
MluCI AATT 9 cut(s) 126, 203, 465, 537, 601, 724, 1233, 1262, 1363
MluNI TGGCCA 1 cut(s) 793
MlyI GAGTC 2 cut(s) 794, 1078
MmeI TCCRAC 1 cut(s) 1076
MnlI CCTC 8 cut(s) 349, 496, 585, 619, 790, 968, 1148, 1340
Mox20I TGGCCA 1 cut(s) 793
Mph1103I ATGCAT 1 cut(s) 1306
MscI TGGCCA 1 cut(s) 793
MseI TTAA 5 cut(s) 483, 708, 945, 1214, 1307
MslI CAYNNNNRTG 1 cut(s) 937
Msp20I TGGCCA 1 cut(s) 793
MspCI CTTAAG 1 cut(s) 1213
MspI CCGG 1 cut(s) 1174
MspR9I CCNGG 3 cut(s) 318, 462, 679
Mva1269I GAATGC 1 cut(s) 651
MvaI CCWGG 3 cut(s) 318, 462, 679
NcoI CCATGG 1 cut(s) 1107
NdeI CATATG 1 cut(s) 63
NdeII GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
NlaIV GGNNCC 2 cut(s) 753, 1038
NmeAIII GCCGAG 1 cut(s) 649
NmuCI GTSAC 3 cut(s) 148, 367, 558
NsiI ATGCAT 1 cut(s) 1306
NspI RCATGY 2 cut(s) 179, 742
NspV TTCGAA 1 cut(s) 533
PagI TCATGA 1 cut(s) 700
PceI AGGCCT 1 cut(s) 912
PciI ACATGT 1 cut(s) 738
PctI GAATGC 1 cut(s) 651
PfeI GAWTC 1 cut(s) 141
PflMI CCANNNNNTGG 1 cut(s) 395
PkrI GCNGC 3 cut(s) 69, 193, 781
PleI GAGTC 2 cut(s) 794, 1078
PpsI GAGTC 2 cut(s) 794, 1078
Ppu21I YACGTR 1 cut(s) 182
PscI ACATGT 1 cut(s) 738
PshAI GACNNNNGTC 1 cut(s) 374
PsiI TTATAA 1 cut(s) 1197
Psp6I CCWGG 3 cut(s) 316, 460, 677
PspGI CCWGG 3 cut(s) 316, 460, 677
PspN4I GGNNCC 2 cut(s) 753, 1038
PspOMI GGGCCC 1 cut(s) 751
PspPI GGNCC 2 cut(s) 751, 752
PstI CTGCAG 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 2 cut(s) 527, 1349
RsaI GTAC 2 cut(s) 233, 586
RsaNI GTAC 2 cut(s) 232, 585
RseI CAYNNNNRTG 1 cut(s) 937
SalI GTCGAC 1 cut(s) 927
SaqAI TTAA 5 cut(s) 483, 708, 945, 1214, 1307
SatI GCNGC 3 cut(s) 68, 192, 780
Sau3AI GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
Sau96I GGNCC 2 cut(s) 751, 752
SchI GAGTC 2 cut(s) 794, 1078
ScrFI CCNGG 3 cut(s) 318, 462, 679
SduI GDGCHC 2 cut(s) 755, 1039
SfaNI GCATC 3 cut(s) 256, 876, 1191
SfcI CTRYAG 2 cut(s) 192, 1382
SfuI TTCGAA 1 cut(s) 533
SmiMI CAYNNNNRTG 1 cut(s) 937
SmlI CTYRAG 2 cut(s) 811, 1213
SmoI CTYRAG 2 cut(s) 811, 1213
SpeI ACTAGT 1 cut(s) 581
Sse9I AATT 9 cut(s) 126, 203, 465, 537, 601, 724, 1233, 1262, 1363
SseBI AGGCCT 1 cut(s) 912
SsiI CCGC 3 cut(s) 22, 217, 969
SspI AATATT 1 cut(s) 641
SspMI CTAG 2 cut(s) 582, 837
StuI AGGCCT 1 cut(s) 912
StyD4I CCNGG 3 cut(s) 316, 460, 677
StyI CCWWGG 2 cut(s) 1015, 1107
TaaI ACNGT 3 cut(s) 241, 558, 951
TaiI ACGT 1 cut(s) 184
TaqI TCGA 5 cut(s) 533, 803, 822, 928, 1103
TasI AATT 9 cut(s) 126, 203, 465, 537, 601, 724, 1233, 1262, 1363
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 5 cut(s) 483, 708, 945, 1214, 1307
Tru9I TTAA 5 cut(s) 483, 708, 945, 1214, 1307
TscAI CASTG 2 cut(s) 753, 1037
TseFI GTSAC 3 cut(s) 148, 367, 558
TseI GCWGC 3 cut(s) 67, 191, 779
Tsp45I GTSAC 3 cut(s) 148, 367, 558
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 2 cut(s) 753, 1037
Van91I CCANNNNNTGG 1 cut(s) 395
Vha464I CTTAAG 1 cut(s) 1213
XagI CCTNNNNNAGG 1 cut(s) 87
XapI RAATTY 3 cut(s) 465, 601, 1363
XceI RCATGY 2 cut(s) 179, 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 928
XspI CTAG 2 cut(s) 582, 837
Zsp2I ATGCAT 1 cut(s) 1306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.