MD14G1098100.v1.1

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0015617
Physical Location & Seq
Forward (+)
14951127 .. 14952494
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1098100.v1.1.491

Sequence Viewer

Length: 432 bp
ATGCCTCGAGGAACTCTTGAAGTTAACCTTGTTAATGCCAAGGGCCTTAAAAACACAGAGTTTTTCGGCAATATGGATCCTTATGTCATCATCACCTGCAAGAAACAGCAGAAGAAGAGCAAGGTCGCAACAGCACAAGGGTCCAATCCAGAATGGAATGAGAACTTTGTATTCAGCGTCGCTGATGGTGTGACAGAACTCCACCTGATGATCATGGACAAGGATACTGGTACCGCCGATGACTTTGTGGGAGAATTAAGTATTCCACTAAGAACAATTTATGAGGAAGGGAAACTACCACCAATGAAATACAATGTCCTAAGGAACAAAAAGTACCACGGAGAGATTAAAATCGGATTCACGTTCACTCCAGCTGTGACCAATGATCGAGAGTTGGAATTTGTAGGTGGATGGAAAGAGTCGTCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

144

Amino Acids

16.16

Weight (kDa)

6.14

Isoelectric Point (pI)

18.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 98 1.2e-24 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015617)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01841
malus_domestica MD14G1098100.v1.1
prunus_persica Prupe.5G094600_v2.0.a1
pyrus_communis pycom14g09620
rosa_chinensis RchiOBHm_Chr7g0198691
rosa_laevigata RLG00000003845
rosa_roxburghii Rroxscaffold_3G00257500
rosa_rugosa Rorug07G0049500 Rorug07G0049600 Rorug07G0049700 Rorug07G0049800
rosa_samantha Rh7AG173200 Rh7BG176600 Rh7CG182500 Rh7DG175900
rosa_wichuraiana Rw7G015170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 104
AbsI CCTCGAGG 1 cut(s) 6
Acc36I ACCTGC 1 cut(s) 104
Acc65I GGTACC 1 cut(s) 230
AccB1I GGYRCC 1 cut(s) 230
AciI CCGC 1 cut(s) 234
AclWI GGATC 2 cut(s) 71, 84
AcsI RAATTY 1 cut(s) 398
AfaI GTAC 2 cut(s) 232, 335
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 1 cut(s) 374
AluI AGCT 1 cut(s) 374
AlwI GGATC 2 cut(s) 71, 84
Ama87I CYCGRG 1 cut(s) 6
AoxI GGCC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 398
Asp718I GGTACC 1 cut(s) 230
AspS9I GGNCC 2 cut(s) 43, 141
AsuHPI GGTGA 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 6
AvaII GGWCC 1 cut(s) 141
AxyI CCTNAGG 1 cut(s) 320
BamHI GGATCC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 230
BarI GAAGNNNNNNTAC 2 cut(s) 279, 311
BccI CCATC 2 cut(s) 179, 405
BciVI GTATCC 1 cut(s) 217
BclI TGATCA 1 cut(s) 210
BfaI CTAG 1 cut(s) 430
BfuAI ACCTGC 1 cut(s) 104
BfuI GTATCC 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 141
BmeT110I CYCGRG 1 cut(s) 6
BmgT120I GGNCC 2 cut(s) 43, 141
BmiI GGNNCC 3 cut(s) 78, 142, 232
BpmI CTGGAG 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 39, 337
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bse1I ACTGG 1 cut(s) 232
Bse21I CCTNAGG 1 cut(s) 320
Bse8I GATNNNNATC 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 39, 337
BseGI GGATG 1 cut(s) 416
BseJI GATNNNNATC 1 cut(s) 350
BseNI ACTGG 1 cut(s) 232
BshFI GGCC 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 6
BsnI GGCC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 6
Bsp143I GATC 3 cut(s) 76, 210, 385
BspACI CCGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 45
BspLI GGNNCC 3 cut(s) 78, 142, 232
BspMI ACCTGC 1 cut(s) 104
BspPI GGATC 2 cut(s) 71, 84
BspQI GCTCTTC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 39, 337
BssMI GATC 3 cut(s) 76, 210, 385
BssT1I CCWWGG 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 269, 320
BstDSI CCRYGG 1 cut(s) 337
BstF5I GGATG 1 cut(s) 416
BstKTI GATC 3 cut(s) 79, 213, 388
BstMBI GATC 3 cut(s) 76, 210, 385
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 320
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 337
BtsCI GGATG 1 cut(s) 416
BveI ACCTGC 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 43, 141
CseI GACGC 1 cut(s) 166
Csp6I GTAC 2 cut(s) 231, 334
CviAII CATG 1 cut(s) 214
CviJI RGCY 2 cut(s) 45, 374
CviKI_1 RGCY 2 cut(s) 45, 374
CviQI GTAC 2 cut(s) 231, 334
DdeI CTNAG 2 cut(s) 269, 320
DpnI GATC 3 cut(s) 78, 212, 387
DpnII GATC 3 cut(s) 76, 210, 385
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 217
FaiI YATR 5 cut(s) 74, 84, 215, 282, 427
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 1 cut(s) 213
FbaI TGATCA 1 cut(s) 210
FokI GGATG 1 cut(s) 423
FspBI CTAG 1 cut(s) 430
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 1 cut(s) 45
HgaI GACGC 1 cut(s) 166
Hin1II CATG 1 cut(s) 217
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 357, 419
HpaI GTTAAC 1 cut(s) 25
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 25, 366
Hpy188I TCNGA 1 cut(s) 356
Hpy188III TCNNGA 3 cut(s) 17, 149, 389
Hpy8I GTNNAC 2 cut(s) 25, 366
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 1 cut(s) 99
HpyF3I CTNAG 2 cut(s) 269, 320
HpySE526I ACGT 1 cut(s) 362
Hsp92II CATG 1 cut(s) 217
KpnI GGTACC 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 210
KspAI GTTAAC 1 cut(s) 25
Kzo9I GATC 3 cut(s) 76, 210, 385
LguI GCTCTTC 1 cut(s) 110
LpnPI CCDG 5 cut(s) 109, 162, 213, 218, 384
MaeI CTAG 1 cut(s) 430
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 2 cut(s) 190, 376
MalI GATC 3 cut(s) 78, 212, 387
MboI GATC 3 cut(s) 76, 210, 385
MboII GAAGA 2 cut(s) 124, 127
MflI RGATCY 1 cut(s) 76
MluCI AATT 3 cut(s) 254, 276, 398
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 2 cut(s) 15, 277
MseI TTAA 5 cut(s) 24, 33, 48, 257, 348
MspA1I CMGCKG 1 cut(s) 374
NdeII GATC 3 cut(s) 76, 210, 385
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 3 cut(s) 78, 142, 232
NmuCI GTSAC 2 cut(s) 190, 376
PaeR7I CTCGAG 1 cut(s) 6
PaqCI CACCTGC 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 357
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PspN4I GGNNCC 3 cut(s) 78, 142, 232
PspPI GGNCC 2 cut(s) 43, 141
PspXI VCTCGAGB 1 cut(s) 6
PsrI GAACNNNNNNTAC 2 cut(s) 317, 349
PsuI RGATCY 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 2 cut(s) 232, 335
RsaNI GTAC 2 cut(s) 231, 334
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 5 cut(s) 24, 33, 48, 257, 348
Sau3AI GATC 3 cut(s) 76, 210, 385
Sau96I GGNCC 2 cut(s) 43, 141
SchI GAGTC 1 cut(s) 428
SetI ASST 7 cut(s) 30, 98, 126, 207, 365, 376, 409
Sfr274I CTCGAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 141
SlaI CTCGAG 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 3 cut(s) 254, 276, 398
SsiI CCGC 1 cut(s) 234
SspMI CTAG 1 cut(s) 430
StyI CCWWGG 1 cut(s) 39
TaiI ACGT 1 cut(s) 365
TaqI TCGA 2 cut(s) 7, 388
TasI AATT 3 cut(s) 254, 276, 398
TfiI GAWTC 1 cut(s) 357
Tru1I TTAA 5 cut(s) 24, 33, 48, 257, 348
Tru9I TTAA 5 cut(s) 24, 33, 48, 257, 348
TseFI GTSAC 2 cut(s) 190, 376
Tsp45I GTSAC 2 cut(s) 190, 376
TspDTI ATGAA 1 cut(s) 320
TspGWI ACGGA 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 141
XapI RAATTY 1 cut(s) 398
XhoI CTCGAG 1 cut(s) 6
XspI CTAG 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.