Protein of unknown function (DUF3741)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g02600 FvH4_5g02600 FvH4_5g02600 FvH4_5g02600 FvH4_5g02600 |
| malus_domestica | MD06G1085000.v1.1 MD14G1105800.v1.1 |
| prunus_persica | Prupe.5G101000_v2.0.a1 Prupe.5G101000_v2.0.a1 Prupe.5G101000_v2.0.a1 |
| pyrus_communis | pycom06g08110 pycom14g10130 |
| rosa_chinensis | RchiOBHm_Chr7g0197501 |
| rosa_laevigata | RLG00000003935 RLG00000019391 |
| rosa_multiflora | Rmu_sc0002167.1_g000007 Rmu_sc0002395.1_g000015 |
| rosa_roxburghii | Rroxscaffold_3G00258410 |
| rosa_rugosa | Rorug07G0040200 Rorug07G0040200 |
| rosa_samantha | Rh4CG285900 Rh7AG165300 Rh7BG167400 Rh7CG173800 Rh7DG166700 |
| rosa_wichuraiana | Rw7G014410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1993, 2398 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 211 |
| AccI | GTMKAC | 1 cut(s) | 2259 |
| AccII | CGCG | 2 cut(s) | 509, 2027 |
| AciI | CCGC | 5 cut(s) | 425, 509, 2025, 2027, 2263 |
| AclWI | GGATC | 2 cut(s) | 1213, 1380 |
| AcsI | RAATTY | 7 cut(s) | 156, 626, 706, 748, 967, 1126, 2124 |
| AcuI | CTGAAG | 4 cut(s) | 413, 912, 1478, 2010 |
| AdeI | CACNNNGTG | 1 cut(s) | 1136 |
| AfeI | AGCGCT | 1 cut(s) | 1594 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 211, 280, 431, 1076, 1139, 1389, 1390 |
| AflIII | ACRYGT | 1 cut(s) | 1427 |
| AgsI | TTSAA | 9 cut(s) | 138, 337, 357, 496, 706, 773, 1676, 2056, 2130 |
| AhlI | ACTAGT | 2 cut(s) | 404, 2039 |
| AjnI | CCWGG | 2 cut(s) | 1132, 1383 |
| Alw21I | GWGCWC | 2 cut(s) | 1932, 1998 |
| Alw26I | GTCTC | 5 cut(s) | 792, 819, 994, 1170, 1730 |
| AlwI | GGATC | 2 cut(s) | 1213, 1380 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 436, 1745, 1946 |
| Ama87I | CYCGRG | 1 cut(s) | 1952 |
| Aor51HI | AGCGCT | 1 cut(s) | 1594 |
| AoxI | GGCC | 2 cut(s) | 76, 609 |
| ApeKI | GCWGC | 8 cut(s) | 301, 512, 602, 1512, 1840, 2102, 2188, 2404 |
| ApoI | RAATTY | 7 cut(s) | 156, 626, 706, 748, 967, 1126, 2124 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1126 |
| AspA2I | CCTAGG | 1 cut(s) | 1283 |
| AspLEI | GCGC | 1 cut(s) | 1595 |
| AspS9I | GGNCC | 5 cut(s) | 368, 742, 869, 2019, 2029 |
| AsuC2I | CCSGG | 2 cut(s) | 867, 2395 |
| AsuHPI | GGTGA | 9 cut(s) | 673, 1122, 1268, 1405, 1440, 1454, 1848, 1866, 2362 |
| AsuII | TTCGAA | 1 cut(s) | 1074 |
| AsuNHI | GCTAGC | 2 cut(s) | 395, 1907 |
| AvaI | CYCGRG | 1 cut(s) | 1952 |
| AvaII | GGWCC | 5 cut(s) | 368, 742, 869, 2019, 2029 |
| AvrII | CCTAGG | 1 cut(s) | 1283 |
| BanII | GRGCYC | 1 cut(s) | 29 |
| BbsI | GAAGAC | 2 cut(s) | 780, 900 |
| Bbv12I | GWGCWC | 2 cut(s) | 1932, 1998 |
| BbvCI | CCTCAGC | 2 cut(s) | 606, 2466 |
| BbvI | GCAGC | 8 cut(s) | 288, 524, 614, 1499, 1852, 2089, 2175, 2416 |
| BccI | CCATC | 7 cut(s) | 472, 620, 650, 1287, 1852, 2413, 2479 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1886, 1920 |
| BciT130I | CCWGG | 2 cut(s) | 1134, 1385 |
| BclI | TGATCA | 1 cut(s) | 2340 |
| BcnI | CCSGG | 2 cut(s) | 867, 2395 |
| BcoDI | GTCTC | 5 cut(s) | 792, 819, 994, 1170, 1730 |
| BcuI | ACTAGT | 2 cut(s) | 404, 2039 |
| BfaI | CTAG | 8 cut(s) | 396, 405, 675, 758, 1284, 1317, 1908, 2040 |
| BfmI | CTRYAG | 8 cut(s) | 302, 737, 1008, 1437, 1453, 1524, 1731, 2189 |
| BfoI | RGCGCY | 1 cut(s) | 1596 |
| BfuAI | ACCTGC | 2 cut(s) | 1993, 2398 |
| BisI | GCNGC | 9 cut(s) | 302, 510, 513, 603, 1513, 1841, 2103, 2189, 2405 |
| BlnI | CCTAGG | 1 cut(s) | 1283 |
| BlsI | GCNGC | 9 cut(s) | 303, 511, 514, 604, 1514, 1842, 2104, 2190, 2406 |
| BmcAI | AGTACT | 1 cut(s) | 568 |
| Bme1390I | CCNGG | 4 cut(s) | 867, 1134, 1385, 2395 |
| Bme18I | GGWCC | 5 cut(s) | 368, 742, 869, 2019, 2029 |
| BmeT110I | CYCGRG | 1 cut(s) | 1952 |
| BmgT120I | GGNCC | 5 cut(s) | 368, 742, 869, 2019, 2029 |
| BmiI | GGNNCC | 4 cut(s) | 744, 870, 2021, 2031 |
| BmrFI | CCNGG | 4 cut(s) | 867, 1134, 1385, 2395 |
| BmsI | GCATC | 5 cut(s) | 679, 1238, 1920, 1960, 2452 |
| BmtI | GCTAGC | 2 cut(s) | 399, 1911 |
| BpiI | GAAGAC | 2 cut(s) | 780, 900 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1019, 1051 |
| BpmI | CTGGAG | 1 cut(s) | 1406 |
| Bpu10I | CCTNAGC | 2 cut(s) | 606, 2466 |
| Bpu14I | TTCGAA | 1 cut(s) | 1074 |
| BpuEI | CTTGAG | 2 cut(s) | 955, 1501 |
| BpuMI | CCSGG | 2 cut(s) | 867, 2395 |
| BsaAI | YACGTR | 1 cut(s) | 1430 |
| BsaJI | CCNNGG | 9 cut(s) | 94, 1283, 1383, 1549, 1627, 1689, 2025, 2285, 2393 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 275, 305, 1186, 1216, 1304, 1334 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 211, 280, 431, 1076, 1139, 1389, 1390 |
| Bse1I | ACTGG | 6 cut(s) | 522, 670, 1236, 1609, 1870, 1940 |
| BseBI | CCWGG | 2 cut(s) | 1134, 1385 |
| BseDI | CCNNGG | 9 cut(s) | 94, 1283, 1383, 1549, 1627, 1689, 2025, 2285, 2393 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 211, 280, 431, 1076, 1139, 1389, 1390 |
| BseMII | CTCAG | 7 cut(s) | 288, 428, 597, 793, 803, 1398, 2457 |
| BseNI | ACTGG | 6 cut(s) | 522, 670, 1236, 1609, 1870, 1940 |
| BseRI | GAGGAG | 4 cut(s) | 1103, 1146, 1998, 2213 |
| BseXI | GCAGC | 8 cut(s) | 288, 524, 614, 1499, 1852, 2089, 2175, 2416 |
| BseYI | CCCAGC | 1 cut(s) | 1188 |
| BsgI | GTGCAG | 1 cut(s) | 1529 |
| Bsh1236I | CGCG | 2 cut(s) | 509, 2027 |
| BshFI | GGCC | 2 cut(s) | 78, 611 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1932, 1998 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1952 |
| BsiSI | CCGG | 2 cut(s) | 866, 2395 |
| BslFI | GGGAC | 1 cut(s) | 2005 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 211, 280, 431, 1076, 1139, 1389, 1390 |
| BsmAI | GTCTC | 5 cut(s) | 792, 819, 994, 1170, 1730 |
| BsmFI | GGGAC | 1 cut(s) | 2005 |
| BsmI | GAATGC | 1 cut(s) | 133 |
| BsnI | GGCC | 2 cut(s) | 78, 611 |
| BsoBI | CYCGRG | 1 cut(s) | 1952 |
| Bsp119I | TTCGAA | 1 cut(s) | 1074 |
| Bsp1286I | GDGCHC | 3 cut(s) | 29, 1932, 1998 |
| Bsp143I | GATC | 8 cut(s) | 1113, 1205, 1246, 1372, 1506, 2070, 2269, 2340 |
| Bsp19I | CCATGG | 1 cut(s) | 1689 |
| BspACI | CCGC | 5 cut(s) | 425, 509, 2025, 2027, 2263 |
| BspANI | GGCC | 2 cut(s) | 78, 611 |
| BspCNI | CTCAG | 7 cut(s) | 289, 427, 598, 792, 802, 1399, 2458 |
| BspFNI | CGCG | 2 cut(s) | 509, 2027 |
| BspHI | TCATGA | 1 cut(s) | 2013 |
| BspLI | GGNNCC | 4 cut(s) | 744, 870, 2021, 2031 |
| BspMAI | CTGCAG | 3 cut(s) | 306, 1735, 2193 |
| BspMI | ACCTGC | 2 cut(s) | 1993, 2398 |
| BspOI | GCTAGC | 2 cut(s) | 399, 1911 |
| BspPI | GGATC | 2 cut(s) | 1213, 1380 |
| BspQI | GCTCTTC | 3 cut(s) | 194, 1986, 2499 |
| BspT104I | TTCGAA | 1 cut(s) | 1074 |
| BsrI | ACTGG | 6 cut(s) | 522, 670, 1236, 1609, 1870, 1940 |
| BssECI | CCNNGG | 9 cut(s) | 94, 1283, 1383, 1549, 1627, 1689, 2025, 2285, 2393 |
| BssMI | GATC | 8 cut(s) | 1113, 1205, 1246, 1372, 1506, 2070, 2269, 2340 |
| BssNAI | GTATAC | 1 cut(s) | 2260 |
| BssT1I | CCWWGG | 5 cut(s) | 94, 1283, 1549, 1689, 2285 |
| Bst1107I | GTATAC | 1 cut(s) | 2260 |
| Bst2UI | CCWGG | 2 cut(s) | 1134, 1385 |
| Bst6I | CTCTTC | 8 cut(s) | 86, 194, 519, 541, 759, 1986, 2053, 2499 |
| BstBAI | YACGTR | 1 cut(s) | 1430 |
| BstBI | TTCGAA | 1 cut(s) | 1074 |
| BstC8I | GCNNGC | 8 cut(s) | 397, 963, 1597, 1909, 2100, 2107, 2193, 2219 |
| BstDSI | CCRYGG | 3 cut(s) | 1627, 1689, 2025 |
| BstEII | GGTNACC | 1 cut(s) | 1274 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1137 |
| BstFNI | CGCG | 2 cut(s) | 509, 2027 |
| BstH2I | RGCGCY | 1 cut(s) | 1596 |
| BstHHI | GCGC | 1 cut(s) | 1595 |
| BstKTI | GATC | 8 cut(s) | 1116, 1208, 1249, 1375, 1509, 2073, 2272, 2343 |
| BstMAI | GTCTC | 5 cut(s) | 792, 819, 994, 1170, 1730 |
| BstMBI | GATC | 8 cut(s) | 1113, 1205, 1246, 1372, 1506, 2070, 2269, 2340 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 518, 608 |
| BstNI | CCWGG | 2 cut(s) | 1134, 1385 |
| BstNSI | RCATGY | 3 cut(s) | 883, 1007, 2221 |
| BstPI | GGTNACC | 1 cut(s) | 1274 |
| BstSCI | CCNGG | 4 cut(s) | 865, 1132, 1383, 2393 |
| BstSFI | CTRYAG | 8 cut(s) | 302, 737, 1008, 1437, 1453, 1524, 1731, 2189 |
| BstUI | CGCG | 2 cut(s) | 509, 2027 |
| BstV1I | GCAGC | 8 cut(s) | 288, 524, 614, 1499, 1852, 2089, 2175, 2416 |
| BstV2I | GAAGAC | 2 cut(s) | 780, 900 |
| BstZ17I | GTATAC | 1 cut(s) | 2260 |
| BsuRI | GGCC | 2 cut(s) | 78, 611 |
| BtgI | CCRYGG | 3 cut(s) | 1627, 1689, 2025 |
| BtsI | GCAGTG | 1 cut(s) | 2272 |
| BtsIMutI | CAGTG | 6 cut(s) | 294, 515, 1223, 1243, 1746, 2272 |
| BveI | ACCTGC | 2 cut(s) | 1993, 2398 |
| Cac8I | GCNNGC | 8 cut(s) | 397, 963, 1597, 1909, 2100, 2107, 2193, 2219 |
| CaiI | CAGNNNCTG | 3 cut(s) | 436, 1745, 1946 |
| CciI | TCATGA | 1 cut(s) | 2013 |
| CfoI | GCGC | 1 cut(s) | 1595 |
| Cfr13I | GGNCC | 5 cut(s) | 368, 742, 869, 2019, 2029 |
| Cfr42I | CCGCGG | 1 cut(s) | 2028 |
| CseI | GACGC | 1 cut(s) | 338 |
| CsiI | ACCWGGT | 1 cut(s) | 1132 |
| DpnI | GATC | 8 cut(s) | 1115, 1207, 1248, 1374, 1508, 2072, 2271, 2342 |
| DpnII | GATC | 8 cut(s) | 1113, 1205, 1246, 1372, 1506, 2070, 2269, 2340 |
| DraIII | CACNNNGTG | 1 cut(s) | 1136 |
| Eam1104I | CTCTTC | 8 cut(s) | 86, 194, 519, 541, 759, 1986, 2053, 2499 |
| EarI | CTCTTC | 8 cut(s) | 86, 194, 519, 541, 759, 1986, 2053, 2499 |
| Eco130I | CCWWGG | 5 cut(s) | 94, 1283, 1549, 1689, 2285 |
| Eco24I | GRGCYC | 1 cut(s) | 29 |
| Eco32I | GATATC | 1 cut(s) | 1398 |
| Eco47I | GGWCC | 5 cut(s) | 368, 742, 869, 2019, 2029 |
| Eco47III | AGCGCT | 1 cut(s) | 1594 |
| Eco57I | CTGAAG | 4 cut(s) | 413, 912, 1478, 2010 |
| Eco88I | CYCGRG | 1 cut(s) | 1952 |
| Eco91I | GGTNACC | 1 cut(s) | 1274 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1137 |
| EcoO109I | RGGNCCY | 2 cut(s) | 742, 2019 |
| EcoO65I | GGTNACC | 1 cut(s) | 1274 |
| EcoRI | GAATTC | 2 cut(s) | 706, 748 |
| EcoRII | CCWGG | 2 cut(s) | 1132, 1383 |
| EcoRV | GATATC | 1 cut(s) | 1398 |
| EcoT14I | CCWWGG | 5 cut(s) | 94, 1283, 1549, 1689, 2285 |
| EcoT22I | ATGCAT | 1 cut(s) | 694 |
| EcoT38I | GRGCYC | 1 cut(s) | 29 |
| ErhI | CCWWGG | 5 cut(s) | 94, 1283, 1549, 1689, 2285 |
| FaqI | GGGAC | 1 cut(s) | 2005 |
| FauI | CCCGC | 1 cut(s) | 2032 |
| FauNDI | CATATG | 1 cut(s) | 342 |
| FbaI | TGATCA | 1 cut(s) | 2340 |
| FblI | GTMKAC | 1 cut(s) | 2259 |
| Fnu4HI | GCNGC | 9 cut(s) | 302, 510, 513, 603, 1513, 1841, 2103, 2189, 2405 |
| FriOI | GRGCYC | 1 cut(s) | 29 |
| Fsp4HI | GCNGC | 9 cut(s) | 302, 510, 513, 603, 1513, 1841, 2103, 2189, 2405 |
| FspBI | CTAG | 8 cut(s) | 396, 405, 675, 758, 1284, 1317, 1908, 2040 |
| GlaI | GCGC | 1 cut(s) | 1594 |
| GluI | GCNGC | 9 cut(s) | 302, 510, 513, 603, 1513, 1841, 2103, 2189, 2405 |
| GsaI | CCCAGC | 1 cut(s) | 1192 |
| GsuI | CTGGAG | 1 cut(s) | 1406 |
| HaeII | RGCGCY | 1 cut(s) | 1596 |
| HaeIII | GGCC | 2 cut(s) | 78, 611 |
| HapII | CCGG | 2 cut(s) | 866, 2395 |
| HgaI | GACGC | 1 cut(s) | 338 |
| HhaI | GCGC | 1 cut(s) | 1595 |
| Hin6I | GCGC | 1 cut(s) | 1593 |
| HinP1I | GCGC | 1 cut(s) | 1593 |
| HindIII | AAGCTT | 2 cut(s) | 500, 2107 |
| HpaII | CCGG | 2 cut(s) | 866, 2395 |
| HphI | GGTGA | 9 cut(s) | 673, 1122, 1268, 1405, 1440, 1454, 1848, 1866, 2362 |
| Hpy166II | GTNNAC | 4 cut(s) | 294, 664, 1624, 2260 |
| Hpy188III | TCNNGA | 6 cut(s) | 675, 1160, 1168, 1406, 1772, 2014 |
| Hpy8I | GTNNAC | 4 cut(s) | 294, 664, 1624, 2260 |
| HpyAV | CCTTC | 4 cut(s) | 1070, 1081, 1643, 2452 |
| HpyCH4IV | ACGT | 3 cut(s) | 766, 1429, 2361 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 518, 608 |
| HpySE526I | ACGT | 3 cut(s) | 766, 1429, 2361 |
| HspAI | GCGC | 1 cut(s) | 1593 |
| Ksp22I | TGATCA | 1 cut(s) | 2340 |
| KspI | CCGCGG | 1 cut(s) | 2028 |
| Kzo9I | GATC | 8 cut(s) | 1113, 1205, 1246, 1372, 1506, 2070, 2269, 2340 |
| LguI | GCTCTTC | 3 cut(s) | 194, 1986, 2499 |
| LmnI | GCTCC | 5 cut(s) | 738, 1837, 2011, 2208, 2226 |
| Lsp1109I | GCAGC | 8 cut(s) | 288, 524, 614, 1499, 1852, 2089, 2175, 2416 |
| LweI | GCATC | 5 cut(s) | 679, 1238, 1920, 1960, 2452 |
| MabI | ACCWGGT | 1 cut(s) | 1132 |
| MaeI | CTAG | 8 cut(s) | 396, 405, 675, 758, 1284, 1317, 1908, 2040 |
| MaeII | ACGT | 3 cut(s) | 766, 1429, 2361 |
| MaeIII | GTNAC | 3 cut(s) | 98, 1274, 1872 |
| MalI | GATC | 8 cut(s) | 1115, 1207, 1248, 1374, 1508, 2072, 2271, 2342 |
| MboI | GATC | 8 cut(s) | 1113, 1205, 1246, 1372, 1506, 2070, 2269, 2340 |
| MfeI | CAATTG | 2 cut(s) | 904, 2325 |
| MhlI | GDGCHC | 3 cut(s) | 29, 1932, 1998 |
| MlyI | GAGTC | 4 cut(s) | 317, 794, 1902, 2135 |
| MmeI | TCCRAC | 3 cut(s) | 153, 1305, 2411 |
| Mph1103I | ATGCAT | 1 cut(s) | 694 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1126 |
| MseI | TTAA | 4 cut(s) | 504, 810, 1334, 1821 |
| MspA1I | CMGCKG | 3 cut(s) | 605, 1512, 2027 |
| MspI | CCGG | 2 cut(s) | 866, 2395 |
| MspR9I | CCNGG | 4 cut(s) | 867, 1134, 1385, 2395 |
| MunI | CAATTG | 2 cut(s) | 904, 2325 |
| Mva1269I | GAATGC | 1 cut(s) | 133 |
| MvaI | CCWGG | 2 cut(s) | 1134, 1385 |
| MvnI | CGCG | 2 cut(s) | 509, 2027 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 518, 608 |
| NciI | CCSGG | 2 cut(s) | 867, 2395 |
| NcoI | CCATGG | 1 cut(s) | 1689 |
| NdeI | CATATG | 1 cut(s) | 342 |
| NdeII | GATC | 8 cut(s) | 1113, 1205, 1246, 1372, 1506, 2070, 2269, 2340 |
| NheI | GCTAGC | 2 cut(s) | 395, 1907 |
| NlaIV | GGNNCC | 4 cut(s) | 744, 870, 2021, 2031 |
| NmuCI | GTSAC | 3 cut(s) | 98, 1274, 1872 |
| NsiI | ATGCAT | 1 cut(s) | 694 |
| NspI | RCATGY | 3 cut(s) | 883, 1007, 2221 |
| NspV | TTCGAA | 1 cut(s) | 1074 |
| PaeI | GCATGC | 1 cut(s) | 2221 |
| PaeR7I | CTCGAG | 1 cut(s) | 1952 |
| PagI | TCATGA | 1 cut(s) | 2013 |
| PciSI | GCTCTTC | 3 cut(s) | 194, 1986, 2499 |
| PctI | GAATGC | 1 cut(s) | 133 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1126 |
| PfeI | GAWTC | 6 cut(s) | 248, 580, 830, 1295, 1583, 1901 |
| PflFI | GACNNNGTC | 2 cut(s) | 899, 1741 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 211 |
| PkrI | GCNGC | 9 cut(s) | 303, 511, 514, 604, 1514, 1842, 2104, 2190, 2406 |
| PleI | GAGTC | 4 cut(s) | 317, 793, 1901, 2135 |
| PpsI | GAGTC | 4 cut(s) | 317, 793, 1901, 2135 |
| Ppu21I | YACGTR | 1 cut(s) | 1430 |
| PpuMI | RGGWCCY | 2 cut(s) | 742, 2019 |
| Psp5II | RGGWCCY | 2 cut(s) | 742, 2019 |
| Psp6I | CCWGG | 2 cut(s) | 1132, 1383 |
| PspEI | GGTNACC | 1 cut(s) | 1274 |
| PspFI | CCCAGC | 1 cut(s) | 1188 |
| PspGI | CCWGG | 2 cut(s) | 1132, 1383 |
| PspN4I | GGNNCC | 4 cut(s) | 744, 870, 2021, 2031 |
| PspPI | GGNCC | 5 cut(s) | 368, 742, 869, 2019, 2029 |
| PspPPI | RGGWCCY | 2 cut(s) | 742, 2019 |
| PspXI | VCTCGAGB | 1 cut(s) | 1952 |
| PstI | CTGCAG | 3 cut(s) | 306, 1735, 2193 |
| PstNI | CAGNNNCTG | 3 cut(s) | 436, 1745, 1946 |
| PsyI | GACNNNGTC | 2 cut(s) | 899, 1741 |
| PvuII | CAGCTG | 2 cut(s) | 605, 1512 |
| SacII | CCGCGG | 1 cut(s) | 2028 |
| SapI | GCTCTTC | 3 cut(s) | 194, 1986, 2499 |
| SaqAI | TTAA | 4 cut(s) | 504, 810, 1334, 1821 |
| SatI | GCNGC | 9 cut(s) | 302, 510, 513, 603, 1513, 1841, 2103, 2189, 2405 |
| Sau3AI | GATC | 8 cut(s) | 1113, 1205, 1246, 1372, 1506, 2070, 2269, 2340 |
| Sau96I | GGNCC | 5 cut(s) | 368, 742, 869, 2019, 2029 |
| ScaI | AGTACT | 1 cut(s) | 568 |
| SchI | GAGTC | 4 cut(s) | 317, 794, 1902, 2135 |
| ScrFI | CCNGG | 4 cut(s) | 867, 1134, 1385, 2395 |
| SduI | GDGCHC | 3 cut(s) | 29, 1932, 1998 |
| SexAI | ACCWGGT | 1 cut(s) | 1132 |
| SfaNI | GCATC | 5 cut(s) | 679, 1238, 1920, 1960, 2452 |
| SfcI | CTRYAG | 8 cut(s) | 302, 737, 1008, 1437, 1453, 1524, 1731, 2189 |
| Sfr274I | CTCGAG | 1 cut(s) | 1952 |
| Sfr303I | CCGCGG | 1 cut(s) | 2028 |
| SfuI | TTCGAA | 1 cut(s) | 1074 |
| SgrBI | CCGCGG | 1 cut(s) | 2028 |
| SinI | GGWCC | 5 cut(s) | 368, 742, 869, 2019, 2029 |
| SlaI | CTCGAG | 1 cut(s) | 1952 |
| SmlI | CTYRAG | 3 cut(s) | 934, 1516, 1952 |
| SmoI | CTYRAG | 3 cut(s) | 934, 1516, 1952 |
| SpeI | ACTAGT | 2 cut(s) | 404, 2039 |
| SphI | GCATGC | 1 cut(s) | 2221 |
| SsiI | CCGC | 5 cut(s) | 425, 509, 2025, 2027, 2263 |
| SspI | AATATT | 1 cut(s) | 1817 |
| SspMI | CTAG | 8 cut(s) | 396, 405, 675, 758, 1284, 1317, 1908, 2040 |
| StyD4I | CCNGG | 4 cut(s) | 865, 1132, 1383, 2393 |
| StyI | CCWWGG | 5 cut(s) | 94, 1283, 1549, 1689, 2285 |
| TaiI | ACGT | 3 cut(s) | 769, 1432, 2364 |
| TaqI | TCGA | 7 cut(s) | 84, 1074, 1803, 1896, 1914, 1953, 2314 |
| TaqII | GACCGA | 1 cut(s) | 356 |
| TatI | WGTACW | 5 cut(s) | 566, 589, 642, 1781, 1948 |
| TauI | GCSGC | 1 cut(s) | 512 |
| TfiI | GAWTC | 6 cut(s) | 248, 580, 830, 1295, 1583, 1901 |
| Tru1I | TTAA | 4 cut(s) | 504, 810, 1334, 1821 |
| Tru9I | TTAA | 4 cut(s) | 504, 810, 1334, 1821 |
| TscAI | CASTG | 6 cut(s) | 301, 522, 1223, 1243, 1746, 2272 |
| TseFI | GTSAC | 3 cut(s) | 98, 1274, 1872 |
| TseI | GCWGC | 8 cut(s) | 301, 512, 602, 1512, 1840, 2102, 2188, 2404 |
| Tsp45I | GTSAC | 3 cut(s) | 98, 1274, 1872 |
| TspRI | CASTG | 6 cut(s) | 301, 522, 1223, 1243, 1746, 2272 |
| Tth111I | GACNNNGTC | 2 cut(s) | 899, 1741 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 211 |
| VpaK11BI | GGWCC | 5 cut(s) | 368, 742, 869, 2019, 2029 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1137 |
| XapI | RAATTY | 7 cut(s) | 156, 626, 706, 748, 967, 1126, 2124 |
| XbaI | TCTAGA | 1 cut(s) | 674 |
| XceI | RCATGY | 3 cut(s) | 883, 1007, 2221 |
| XhoI | CTCGAG | 1 cut(s) | 1952 |
| XmaJI | CCTAGG | 1 cut(s) | 1283 |
| XmiI | GTMKAC | 1 cut(s) | 2259 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1126 |
| XspI | CTAG | 8 cut(s) | 396, 405, 675, 758, 1284, 1317, 1908, 2040 |
| ZrmI | AGTACT | 1 cut(s) | 568 |
| Zsp2I | ATGCAT | 1 cut(s) | 694 |