RLG00000019391

Protein of unknown function (DUF3741)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006931
Physical Location & Seq
Reverse (-)
51455121 .. 51455841
721 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019391

Sequence Viewer

Length: 522 bp
ATGCCATCCCTACTCCTCCTCCGCCGATATGTGAATTCCCCAACTTATTGCCTTATAAGAACCACCGAGTTCCATCCCCATCAAACCAAACTGAACCAGAACCTCAAAGCAGAAGTTAGAGAAAGGCAAGCTCTGAACGTTCTGGGGAAGAGGAGGTGGTGGTTGTTTAGGAGGTCGATGAGGAAGGAAGTGGAAGTACTTGGGGTCTGCCTTCAAGTACTTGGGTTACCTAAGAAGAAAGGAAAGGCTAGCAAAACTAGTCAAATATCTCATCCTCTTTCACCTCAAGATCTGAAAAGTGAAGCTAAGAATGGGAAACCTTATTCAATTTCAGTAGAAACATCTTTAAACAAGCTCAACTCGGCAGCATTGGCAAAAGAGGTGCATGGCAAAAAGCGAAAAGGATTTGGTCGTAAAAGTTTTAATTCTGAGAATACTCTTCAACAAGTACAGAAGAATGAAGCTGAGGCCATCATAAACCAGAAATTCATTGATGAAAAGCACATTAGGCAGATGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3741 DUF4378

Protein Analysis

174

Amino Acids

19.87

Weight (kDa)

10.37

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
AciI CCGC 1 cut(s) 22
AclI AACGTT 1 cut(s) 138
AcsI RAATTY 2 cut(s) 34, 485
AfaI GTAC 3 cut(s) 198, 219, 450
AgsI TTSAA 3 cut(s) 215, 327, 443
AhlI ACTAGT 1 cut(s) 257
AluBI AGCT 4 cut(s) 131, 305, 355, 464
AluI AGCT 4 cut(s) 131, 305, 355, 464
AoxI GGCC 1 cut(s) 468
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 2 cut(s) 34, 485
AsuHPI GGTGA 1 cut(s) 273
AsuNHI GCTAGC 1 cut(s) 248
BarI GAAGNNNNNNTAC 2 cut(s) 180, 212
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 1 cut(s) 377
BccI CCATC 5 cut(s) 13, 81, 87, 479, 508
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 2 cut(s) 249, 258
BglII AGATCT 1 cut(s) 289
BisI GCNGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 367
BmcAI AGTACT 2 cut(s) 198, 219
BmtI GCTAGC 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 270
BsaXI ACNNNNNCTCC 1 cut(s) 33
BseGI GGATG 3 cut(s) 5, 73, 271
BseMII CTCAG 2 cut(s) 420, 456
BseRI GAGGAG 3 cut(s) 5, 8, 166
BseXI GCAGC 1 cut(s) 377
BshFI GGCC 1 cut(s) 470
BsnI GGCC 1 cut(s) 470
Bsp143I GATC 1 cut(s) 289
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 470
BspCNI CTCAG 2 cut(s) 421, 457
BspOI GCTAGC 1 cut(s) 252
BssMI GATC 1 cut(s) 289
Bst6I CTCTTC 2 cut(s) 143, 444
BstC8I GCNNGC 2 cut(s) 129, 250
BstDEI CTNAG 4 cut(s) 231, 306, 429, 465
BstEII GGTNACC 1 cut(s) 225
BstF5I GGATG 3 cut(s) 5, 73, 271
BstKTI GATC 1 cut(s) 292
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 2 cut(s) 371, 508
BstPI GGTNACC 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 470
BtsCI GGATG 3 cut(s) 5, 73, 271
Cac8I GCNNGC 2 cut(s) 129, 250
Csp6I GTAC 3 cut(s) 197, 218, 449
CviAII CATG 1 cut(s) 386
CviJI RGCY 6 cut(s) 131, 248, 305, 355, 464, 470
CviKI_1 RGCY 6 cut(s) 131, 248, 305, 355, 464, 470
CviQI GTAC 3 cut(s) 197, 218, 449
DdeI CTNAG 4 cut(s) 231, 306, 429, 465
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
DraI TTTAAA 1 cut(s) 348
Eam1104I CTCTTC 2 cut(s) 143, 444
EarI CTCTTC 2 cut(s) 143, 444
EciI GGCGGA 1 cut(s) 11
Eco91I GGTNACC 1 cut(s) 225
EcoO65I GGTNACC 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 34
FaeI CATG 1 cut(s) 389
FaiI YATR 4 cut(s) 30, 56, 387, 476
FatI CATG 1 cut(s) 385
Fnu4HI GCNGC 1 cut(s) 366
FokI GGATG 2 cut(s) 60, 258
Fsp4HI GCNGC 1 cut(s) 366
FspBI CTAG 2 cut(s) 249, 258
GluI GCNGC 1 cut(s) 366
HaeIII GGCC 1 cut(s) 470
Hin1II CATG 1 cut(s) 389
HphI GGTGA 1 cut(s) 273
Hpy188I TCNGA 3 cut(s) 135, 294, 430
Hpy188III TCNNGA 1 cut(s) 287
HpyAV CCTTC 2 cut(s) 178, 221
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 508
HpyF3I CTNAG 4 cut(s) 231, 306, 429, 465
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 1 cut(s) 389
Kzo9I GATC 1 cut(s) 289
LpnPI CCDG 3 cut(s) 110, 128, 494
Lsp1109I GCAGC 1 cut(s) 377
MaeI CTAG 2 cut(s) 249, 258
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 225
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 4 cut(s) 160, 247, 431, 466
MflI RGATCY 1 cut(s) 289
MluCI AATT 4 cut(s) 34, 327, 424, 485
MseI TTAA 2 cut(s) 347, 423
MwoI GCNNNNNNNGC 2 cut(s) 371, 508
NdeII GATC 1 cut(s) 289
NheI GCTAGC 1 cut(s) 248
NlaIII CATG 1 cut(s) 389
NmeAIII GCCGAG 1 cut(s) 341
PkrI GCNGC 1 cut(s) 367
PsiI TTATAA 1 cut(s) 56
Psp1406I AACGTT 1 cut(s) 138
PspEI GGTNACC 1 cut(s) 225
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 3 cut(s) 198, 219, 450
RsaNI GTAC 3 cut(s) 197, 218, 449
SaqAI TTAA 2 cut(s) 347, 423
SatI GCNGC 1 cut(s) 366
Sau3AI GATC 1 cut(s) 289
ScaI AGTACT 2 cut(s) 198, 219
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 4 cut(s) 34, 327, 424, 485
SsiI CCGC 1 cut(s) 22
SspMI CTAG 2 cut(s) 249, 258
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 176
TasI AATT 4 cut(s) 34, 327, 424, 485
TatI WGTACW 3 cut(s) 196, 217, 448
Tru1I TTAA 2 cut(s) 347, 423
Tru9I TTAA 2 cut(s) 347, 423
TseI GCWGC 1 cut(s) 365
TspDTI ATGAA 3 cut(s) 474, 478, 510
XapI RAATTY 2 cut(s) 34, 485
XspI CTAG 2 cut(s) 249, 258
ZrmI AGTACT 2 cut(s) 198, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.