Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006931

Physical Location & Seq

Genomic Coordinates Forward (+)

13021295 .. 13027024

Gene Structure 5730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG167400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2556 bp

ATGCATGCATTTTTTATAAATTCCCCTGTTTCATATTCAATAAGATCAAAGCTTTATAATTTTTTTCCTTTGTATGCAGATTATAGAATTTCTAAGACCAAGTTGGATTTGCTTAACAATTTGGATGAGAAGAGCCAAAGCATGGATGATAAAATGACGAACAGAACTCAAACAGTTGATTCTGGTATGGCAAGTAAAAGAAAGCATAAGGGGGAAAAGTTATCCACTGAGCTGCAGATGAAGAAGAAAATTGATTCTGATGAATTGAAACATATGCAATCCAATTCAAAACTTGCTTGTCAGTTACCTAAGAAGAAAGGAAAGGCTAGCAAAACTAGTCAGATATTTCATCCTCTTTCACCTCAGGGTCTGAAAAGTGAAGCTAAGAATGGGAAACCTTCTTATTCAGTTTCAGTAGAAACATCTTCCAACAAGCTCAACTCGGCATCATTGGCAAAAGAGGTGCGTGGCAAAAAGAGAAGAGGATTTGGTTGTAAAAGTATTAATTATGAGATTACTCTTCCACAAGTACAGAAGAATGCAGCTGAGGCCATCATAAATCAGAAATTCATTGATGAAAAGTACATCAGGACAGATGGGGTGAACCACCAGTCTAGACAATTATCAGATGCATTAGAGATTTTGAATTCTAATAAAGAATTATTCATAAAGCTCCTACAAGACCCAAATTCTCTTCTAGCAAAACATATTGAAGACCTCAGAGAATCTCAGGCAGTAAAACATCAGATTAAATCTCCCTCTGACATCAATGTTTCAGAACCAAGGCAATGTGATGGTCCTGCTGGTAATCAGAAGTCGAAATCCTGTGATACCTACTCTTCTGAGGAAAGTGATGATTCCCATTTTTCAGACAGAATAGTAGTTTTGAAACCCGGCCCAACTAGCATGCAAAGTGCTGAAGACAATATTAAGTCTTATTACAGGTTGAGAAATAACGGGCAGAGTGAAATGCCTGCGAATATTTCTTTTAGTCAGATAAAGAAGAAGTTGAGACATGCTATAGGGGTAAGCAGAAAAGAGCAACACTCTAAGTCAAAGGATGGTACATTACATGGATCTCCCTATGAAGGCTCGAAAGAGGATTGTAAAGGAAAAGGTGTGGAGATCATTAGAAGAAATTCACCTTATGGAGGAATGATAATGTCTTCTCTTGATGTAAAGAAAAGAGACAACATGAGCGAGGGGAGAGAATGTGAATCACAAATTCAGTGTGAAACTGCATCAACCAGTGGAAGTGGTCTTGGGAACTTAAACATTTCAGTTGTTTGCCATCCTAGGCTAAAGGAATCTGAAAGTTCTTTGGAGGCTAGATTGTTGGAATTGTTAAACAGTGGAAACAAGGACAAAAACCACAAAAAGCAGGAACTGAAAACCCTGGAAAGGGTGATATCATTTCCTGAGCACGACTTCTTGCCTACACGCAGTCCTGTAGGACTTTCACCCAACAGCAACTGCCAACTGTTATATGAGAACAAATGGAGGCTTCAGAAAGAAAAAACCAGCTGCTCAAGTCCTACAGAGAATAATCGCACCATGCACCAAGGAGAAATCAATTCTTTAAAACAGCCCTCTGAATCAGAAAGCGCTTGCAGAAATGGTACTGTGGAAACTAAAGATACTGTCCACCCTGGAGAAAATAGTTCTTTGGGAGCTCTAAGAAGATCTGATTGCATGGAGAAGACCAGTACCACAGAAACTAGTGATACTGTATACCAAGGAGAAACTGATCCTGCAGAGACACTGTCTGCACTAAATTGCAAAGACAAGGCTCTTGATTGGAGTACAGATAAAGCCGACTTGTACGAGGAAGATGAATATATTAGGACCTCCAGACAGGTGCAGCTATCATCATCTTCACCTAATGTTTTCCAGTCACCTCCAAGAATTCAGAGAGGGGAAGATTCTGCTAGCATCGAAGATAAAGGAGAGCACCCAAGTCCGGTATCTGTACTTGAGCAGTTTTTTGTAGATACCATATCTGAACCTGCTGAAGAGCACCATTCTGCTCCTCTTGTGAGGTCCCCTACGGACACTGACAGTAGCAGTACCTCTTCTTTGAATGAACATGAATTGATCTCCGAGTATATTCAGGCAGTGTTGCGAGCTGCAAGCTTAGATTGGGATGAAATCTCAATGATGTGCGACTCAACAGACCAACTGCTTGACCCGTTCTTGTTTGACACAGTAAAGCTGCAGGCAAACCAACTCCAAGGTGATTGCATGCTCCTCTTTGACTGTATAGATGAAGTCCTTGTTGAAGTATACCACAGTGACCTTCGATATTCCCCTTGGCTGTCATTTATGAACCCAAATGTTCGACAACTTCCGATTGAGAAAACTGTGATTCATAAGGTGATGAAGTATGTTGACTGGTACCTCTCACTTCATCCATCACCCCGGACATTGCAGCAGGTTGTTCAGATGGATATAGCACGATCTGGAACATGGATAGATATCCGGAAGGATGCTGAGGATGTCGTTTTTCAGATGGTAGAAGATGTTTTAGAAGAATTGATAATAGAAACCATAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3741 DUF4378

Protein Analysis

851

Amino Acids

95.85

Weight (kDa)

6.03

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3741	PF12552	187 - 231	3.6e-19	Protein of unknown function (DUF3741)
DUF4378	PF14309	701 - 848	3.1e-24	Domain of unknown function (DUF4378)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02600 FvH4_5g02600 FvH4_5g02600 FvH4_5g02600 FvH4_5g02600
malus_domestica	MD06G1085000.v1.1 MD14G1105800.v1.1
prunus_persica	Prupe.5G101000_v2.0.a1 Prupe.5G101000_v2.0.a1 Prupe.5G101000_v2.0.a1
pyrus_communis	pycom06g08110 pycom14g10130
rosa_chinensis	RchiOBHm_Chr7g0197501
rosa_laevigata	RLG00000003935 RLG00000019391
rosa_multiflora	Rmu_sc0002167.1_g000007 Rmu_sc0002395.1_g000015
rosa_roxburghii	Rroxscaffold_3G00258410
rosa_rugosa	Rorug07G0040200 Rorug07G0040200
rosa_samantha	Rh4CG285900 Rh7AG165300 Rh7BG167400 Rh7CG173800 Rh7DG166700
rosa_wichuraiana	Rw7G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	17, 57
Acc36I	ACCTGC	2 cut(s)	2014, 2422
Acc65I	GGTACC	1 cut(s)	2394
AccB1I	GGYRCC	1 cut(s)	2394
AccB7I	CCANNNNNTGG	1 cut(s)	142
AccI	GTMKAC	2 cut(s)	1731, 2283
AccIII	TCCGGA	1 cut(s)	2478
AclWI	GGATC	2 cut(s)	1084, 1742
AcsI	RAATTY	8 cut(s)	19, 87, 566, 646, 688, 1138, 1224, 1905
AcuI	CTGAAG	3 cut(s)	939, 1490, 2031
AfeI	AGCGCT	1 cut(s)	1606
AfiI	CCNNNNNNNGG	6 cut(s)	142, 1088, 1151, 1401, 1402, 1960
AgsI	TTSAA	8 cut(s)	39, 268, 288, 646, 713, 889, 2080, 2279
AhlI	ACTAGT	2 cut(s)	335, 1718
AjnI	CCWGG	2 cut(s)	1395, 1648
Alw21I	GWGCWC	4 cut(s)	1425, 1675, 1953, 2019
Alw26I	GTCTC	3 cut(s)	1006, 1182, 1751
AlwI	GGATC	2 cut(s)	1084, 1742
AlwNI	CAGNNNCTG	3 cut(s)	370, 1387, 1473
Aor13HI	TCCGGA	1 cut(s)	2478
Aor51HI	AGCGCT	1 cut(s)	1606
AoxI	GGCC	2 cut(s)	549, 895
ApeKI	GCWGC	7 cut(s)	232, 542, 1524, 1861, 2126, 2212, 2428
ApoI	RAATTY	8 cut(s)	19, 87, 566, 646, 688, 1138, 1224, 1905
AseI	ATTAAT	1 cut(s)	504
Asp700I	GAANNNNTTC	1 cut(s)	1138
Asp718I	GGTACC	1 cut(s)	2394
AspA2I	CCTAGG	1 cut(s)	1295
AspLEI	GCGC	1 cut(s)	1607
AspS9I	GGNCC	4 cut(s)	797, 896, 1845, 2040
AsuC2I	CCSGG	2 cut(s)	894, 2419
AsuNHI	GCTAGC	2 cut(s)	326, 1928
AvaII	GGWCC	3 cut(s)	797, 1845, 2040
AvrII	CCTAGG	1 cut(s)	1295
AxyI	CCTNAGG	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	2394
BanII	GRGCYC	1 cut(s)	1675
BbsI	GAAGAC	4 cut(s)	720, 927, 1158, 1706
Bbv12I	GWGCWC	4 cut(s)	1425, 1675, 1953, 2019
BbvCI	CCTCAGC	2 cut(s)	546, 2490
BbvI	GCAGC	7 cut(s)	219, 554, 1511, 1873, 2113, 2199, 2440
BccI	CCATC	8 cut(s)	560, 590, 788, 1055, 1299, 2419, 2437, 2503
BciT130I	CCWGG	2 cut(s)	1397, 1650
BcnI	CCSGG	2 cut(s)	894, 2419
BcoDI	GTCTC	3 cut(s)	1006, 1182, 1751
BcuI	ACTAGT	2 cut(s)	335, 1718
BfaI	CTAG	9 cut(s)	327, 336, 615, 698, 903, 1296, 1329, 1719, 1929
BfmI	CTRYAG	6 cut(s)	233, 1020, 1449, 1536, 1752, 2213
BfoI	RGCGCY	1 cut(s)	1608
BfuAI	ACCTGC	2 cut(s)	2014, 2422
BglII	AGATCT	1 cut(s)	1682
BisI	GCNGC	7 cut(s)	233, 543, 1525, 1862, 2127, 2213, 2429
BlnI	CCTAGG	1 cut(s)	1295
BlsI	GCNGC	7 cut(s)	234, 544, 1526, 1863, 2128, 2214, 2430
Bme1390I	CCNGG	4 cut(s)	894, 1397, 1650, 2419
Bme18I	GGWCC	3 cut(s)	797, 1845, 2040
BmgT120I	GGNCC	4 cut(s)	797, 896, 1845, 2040
BmiI	GGNNCC	2 cut(s)	2042, 2396
BmrFI	CCNGG	4 cut(s)	894, 1397, 1650, 2419
BmsI	GCATC	5 cut(s)	455, 619, 1250, 1941, 2476
BmtI	GCTAGC	2 cut(s)	330, 1932
BpiI	GAAGAC	4 cut(s)	720, 927, 1158, 1706
BplI	GAGNNNNNCTC	2 cut(s)	1031, 1063
BpmI	CTGGAG	2 cut(s)	1671, 1834
Bpu10I	CCTNAGC	3 cut(s)	546, 1419, 2490
BpuEI	CTTGAG	2 cut(s)	1513, 1994
BpuMI	CCSGG	2 cut(s)	894, 2419
BsaBI	GATNNNNATC	1 cut(s)	2474
BsaJI	CCNNGG	9 cut(s)	782, 1295, 1395, 1561, 1648, 1735, 2230, 2309, 2417
BsaWI	WCCGGW	2 cut(s)	1960, 2478
BsaXI	ACNNNNNCTCC	2 cut(s)	1198, 1228
Bsc4I	CCNNNNNNNGG	6 cut(s)	142, 1088, 1151, 1401, 1402, 1960
Bse1I	ACTGG	5 cut(s)	610, 1248, 1704, 1891, 2396
Bse21I	CCTNAGG	1 cut(s)	363
Bse3DI	GCAATG	2 cut(s)	794, 2423
Bse8I	GATNNNNATC	1 cut(s)	2474
BseAI	TCCGGA	1 cut(s)	2478
BseBI	CCWGG	2 cut(s)	1397, 1650
BseDI	CCNNGG	9 cut(s)	782, 1295, 1395, 1561, 1648, 1735, 2230, 2309, 2417
BseGI	GGATG	9 cut(s)	130, 151, 349, 1066, 1291, 2149, 2407, 2491, 2500
BseJI	GATNNNNATC	1 cut(s)	2474
BseLI	CCNNNNNNNGG	6 cut(s)	142, 1088, 1151, 1401, 1402, 1960
BseMI	GCAATG	2 cut(s)	794, 2423
BseMII	CTCAG	8 cut(s)	219, 377, 537, 733, 743, 834, 1410, 2481
BseNI	ACTGG	5 cut(s)	610, 1248, 1704, 1891, 2396
BseRI	GAGGAG	2 cut(s)	2019, 2237
BseXI	GCAGC	7 cut(s)	219, 554, 1511, 1873, 2113, 2199, 2440
BsgI	GTGCAG	2 cut(s)	1752, 1880
BshFI	GGCC	2 cut(s)	551, 897
BshNI	GGYRCC	1 cut(s)	2394
BsiHKAI	GWGCWC	4 cut(s)	1425, 1675, 1953, 2019
BsiSI	CCGG	4 cut(s)	894, 1961, 2419, 2479
BslFI	GGGAC	1 cut(s)	2026
BslI	CCNNNNNNNGG	6 cut(s)	142, 1088, 1151, 1401, 1402, 1960
BsmAI	GTCTC	3 cut(s)	1006, 1182, 1751
BsmFI	GGGAC	1 cut(s)	2026
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	2 cut(s)	551, 897
Bsp1286I	GDGCHC	4 cut(s)	1425, 1675, 1953, 2019
Bsp13I	TCCGGA	1 cut(s)	2478
Bsp143I	GATC	7 cut(s)	44, 1076, 1125, 1682, 1747, 2094, 2456
BspANI	GGCC	2 cut(s)	551, 897
BspCNI	CTCAG	8 cut(s)	220, 376, 538, 732, 742, 835, 1411, 2482
BspEI	TCCGGA	1 cut(s)	2478
BspLI	GGNNCC	2 cut(s)	2042, 2396
BspMAI	CTGCAG	3 cut(s)	237, 1756, 2217
BspMI	ACCTGC	2 cut(s)	2014, 2422
BspOI	GCTAGC	2 cut(s)	330, 1932
BspPI	GGATC	2 cut(s)	1084, 1742
BspQI	GCTCTTC	2 cut(s)	125, 2007
BspT107I	GGYRCC	1 cut(s)	2394
BsrDI	GCAATG	2 cut(s)	794, 2423
BsrI	ACTGG	5 cut(s)	610, 1248, 1704, 1891, 2396
BssECI	CCNNGG	9 cut(s)	782, 1295, 1395, 1561, 1648, 1735, 2230, 2309, 2417
BssMI	GATC	7 cut(s)	44, 1076, 1125, 1682, 1747, 2094, 2456
BssNAI	GTATAC	2 cut(s)	1732, 2284
BssT1I	CCWWGG	6 cut(s)	782, 1295, 1561, 1735, 2230, 2309
Bst1107I	GTATAC	2 cut(s)	1732, 2284
Bst2UI	CCWGG	2 cut(s)	1397, 1650
Bst6I	CTCTTC	7 cut(s)	125, 475, 525, 699, 844, 2007, 2077
BstENI	CCTNNNNNAGG	1 cut(s)	1149
BstF5I	GGATG	9 cut(s)	130, 151, 349, 1066, 1291, 2149, 2407, 2491, 2500
BstH2I	RGCGCY	1 cut(s)	1608
BstHHI	GCGC	1 cut(s)	1607
BstKTI	GATC	7 cut(s)	47, 1079, 1128, 1685, 1750, 2097, 2459
BstMAI	GTCTC	3 cut(s)	1006, 1182, 1751
BstMBI	GATC	7 cut(s)	44, 1076, 1125, 1682, 1747, 2094, 2456
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 548, 903
BstNI	CCWGG	2 cut(s)	1397, 1650
BstNSI	RCATGY	4 cut(s)	8, 910, 1019, 2245
BstSCI	CCNGG	4 cut(s)	892, 1395, 1648, 2417
BstSFI	CTRYAG	6 cut(s)	233, 1020, 1449, 1536, 1752, 2213
BstV1I	GCAGC	7 cut(s)	219, 554, 1511, 1873, 2113, 2199, 2440
BstV2I	GAAGAC	4 cut(s)	720, 927, 1158, 1706
BstX2I	RGATCY	2 cut(s)	1076, 1682
BstYI	RGATCY	2 cut(s)	1076, 1682
BstZ17I	GTATAC	2 cut(s)	1732, 2284
Bsu36I	CCTNAGG	1 cut(s)	363
BsuRI	GGCC	2 cut(s)	551, 897
BtsCI	GGATG	9 cut(s)	130, 151, 349, 1066, 1291, 2149, 2407, 2491, 2500
BtsI	GCAGTG	1 cut(s)	2121
BtsIMutI	CAGTG	8 cut(s)	225, 1235, 1255, 1357, 1760, 2052, 2121, 2296
BveI	ACCTGC	2 cut(s)	2014, 2422
CaiI	CAGNNNCTG	3 cut(s)	370, 1387, 1473
CfoI	GCGC	1 cut(s)	1607
Cfr13I	GGNCC	4 cut(s)	797, 896, 1845, 2040
DpnI	GATC	7 cut(s)	46, 1078, 1127, 1684, 1749, 2096, 2458
DpnII	GATC	7 cut(s)	44, 1076, 1125, 1682, 1747, 2094, 2456
DraI	TTTAAA	1 cut(s)	1581
Eam1104I	CTCTTC	7 cut(s)	125, 475, 525, 699, 844, 2007, 2077
EarI	CTCTTC	7 cut(s)	125, 475, 525, 699, 844, 2007, 2077
Ecl136II	GAGCTC	1 cut(s)	1673
Eco130I	CCWWGG	6 cut(s)	782, 1295, 1561, 1735, 2230, 2309
Eco24I	GRGCYC	1 cut(s)	1675
Eco32I	GATATC	2 cut(s)	1410, 2476
Eco47I	GGWCC	3 cut(s)	797, 1845, 2040
Eco47III	AGCGCT	1 cut(s)	1606
Eco53kI	GAGCTC	1 cut(s)	1673
Eco57I	CTGAAG	3 cut(s)	939, 1490, 2031
Eco81I	CCTNAGG	1 cut(s)	363
EcoICRI	GAGCTC	1 cut(s)	1673
EcoNI	CCTNNNNNAGG	1 cut(s)	1149
EcoO109I	RGGNCCY	2 cut(s)	1845, 2040
EcoRI	GAATTC	2 cut(s)	646, 1905
EcoRII	CCWGG	2 cut(s)	1395, 1648
EcoRV	GATATC	2 cut(s)	1410, 2476
EcoT14I	CCWWGG	6 cut(s)	782, 1295, 1561, 1735, 2230, 2309
EcoT22I	ATGCAT	3 cut(s)	6, 10, 634
EcoT38I	GRGCYC	1 cut(s)	1675
ErhI	CCWWGG	6 cut(s)	782, 1295, 1561, 1735, 2230, 2309
FaqI	GGGAC	1 cut(s)	2026
FauNDI	CATATG	1 cut(s)	273
FblI	GTMKAC	2 cut(s)	1731, 2283
Fnu4HI	GCNGC	7 cut(s)	233, 543, 1525, 1862, 2127, 2213, 2429
FokI	GGATG	9 cut(s)	137, 158, 336, 1073, 1278, 2156, 2394, 2498, 2507
FriOI	GRGCYC	1 cut(s)	1675
Fsp4HI	GCNGC	7 cut(s)	233, 543, 1525, 1862, 2127, 2213, 2429
FspBI	CTAG	9 cut(s)	327, 336, 615, 698, 903, 1296, 1329, 1719, 1929
GlaI	GCGC	1 cut(s)	1606
GluI	GCNGC	7 cut(s)	233, 543, 1525, 1862, 2127, 2213, 2429
GsuI	CTGGAG	2 cut(s)	1671, 1834
HaeII	RGCGCY	1 cut(s)	1608
HaeIII	GGCC	2 cut(s)	551, 897
HapII	CCGG	4 cut(s)	894, 1961, 2419, 2479
HhaI	GCGC	1 cut(s)	1607
Hin6I	GCGC	1 cut(s)	1605
HinP1I	GCGC	1 cut(s)	1605
HincII	GTYRAC	1 cut(s)	2389
HindII	GTYRAC	1 cut(s)	2389
HindIII	AAGCTT	2 cut(s)	50, 2131
HpaII	CCGG	4 cut(s)	894, 1961, 2419, 2479
Hpy166II	GTNNAC	5 cut(s)	604, 1645, 1732, 2284, 2389
Hpy188III	TCNNGA	8 cut(s)	589, 615, 1172, 1418, 1793, 1851, 2460, 2479
Hpy8I	GTNNAC	5 cut(s)	604, 1645, 1732, 2284, 2389
HpyAV	CCTTC	4 cut(s)	408, 1082, 2306, 2476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 548, 903
HspAI	GCGC	1 cut(s)	1605
Kpn2I	TCCGGA	1 cut(s)	2478
KpnI	GGTACC	1 cut(s)	2398
Kzo9I	GATC	7 cut(s)	44, 1076, 1125, 1682, 1747, 2094, 2456
LguI	GCTCTTC	2 cut(s)	125, 2007
LmnI	GCTCC	4 cut(s)	678, 1670, 2032, 2250
Lsp1109I	GCAGC	7 cut(s)	219, 554, 1511, 1873, 2113, 2199, 2440
LweI	GCATC	5 cut(s)	455, 619, 1250, 1941, 2476
MaeI	CTAG	9 cut(s)	327, 336, 615, 698, 903, 1296, 1329, 1719, 1929
MaeIII	GTNAC	3 cut(s)	303, 1893, 2291
MalI	GATC	7 cut(s)	46, 1078, 1127, 1684, 1749, 2096, 2458
MboI	GATC	7 cut(s)	44, 1076, 1125, 1682, 1747, 2094, 2456
MflI	RGATCY	2 cut(s)	1076, 1682
MhlI	GDGCHC	4 cut(s)	1425, 1675, 1953, 2019
MlyI	GAGTC	1 cut(s)	2159
MmeI	TCCRAC	3 cut(s)	84, 453, 1317
Mph1103I	ATGCAT	3 cut(s)	6, 10, 634
MroI	TCCGGA	1 cut(s)	2478
MroXI	GAANNNNTTC	1 cut(s)	1138
MseI	TTAA	7 cut(s)	114, 504, 750, 930, 1271, 1346, 1580
MspA1I	CMGCKG	2 cut(s)	545, 1524
MspI	CCGG	4 cut(s)	894, 1961, 2419, 2479
MspR9I	CCNGG	4 cut(s)	894, 1397, 1650, 2419
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	2 cut(s)	1397, 1650
MwoI	GCNNNNNNNGC	3 cut(s)	452, 548, 903
NciI	CCSGG	2 cut(s)	894, 2419
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	7 cut(s)	44, 1076, 1125, 1682, 1747, 2094, 2456
NheI	GCTAGC	2 cut(s)	326, 1928
NlaIV	GGNNCC	2 cut(s)	2042, 2396
NmeAIII	GCCGAG	1 cut(s)	422
NmuCI	GTSAC	2 cut(s)	1893, 2291
NsiI	ATGCAT	3 cut(s)	6, 10, 634
NspI	RCATGY	4 cut(s)	8, 910, 1019, 2245
PaeI	GCATGC	3 cut(s)	8, 910, 2245
PciSI	GCTCTTC	2 cut(s)	125, 2007
PctI	GAATGC	1 cut(s)	544
PdmI	GAANNNNTTC	1 cut(s)	1138
PfeI	GAWTC	9 cut(s)	179, 254, 725, 857, 1217, 1307, 1595, 1922, 2365
PflFI	GACNNNGTC	1 cut(s)	1762
PflMI	CCANNNNNTGG	1 cut(s)	142
PkrI	GCNGC	7 cut(s)	234, 544, 1526, 1863, 2128, 2214, 2430
PleI	GAGTC	1 cut(s)	2159
PpsI	GAGTC	1 cut(s)	2159
PpuMI	RGGWCCY	2 cut(s)	1845, 2040
PshBI	ATTAAT	1 cut(s)	504
PsiI	TTATAA	2 cut(s)	17, 57
Psp124BI	GAGCTC	1 cut(s)	1675
Psp5II	RGGWCCY	2 cut(s)	1845, 2040
Psp6I	CCWGG	2 cut(s)	1395, 1648
PspGI	CCWGG	2 cut(s)	1395, 1648
PspN4I	GGNNCC	2 cut(s)	2042, 2396
PspPI	GGNCC	4 cut(s)	797, 896, 1845, 2040
PspPPI	RGGWCCY	2 cut(s)	1845, 2040
PstI	CTGCAG	3 cut(s)	237, 1756, 2217
PstNI	CAGNNNCTG	3 cut(s)	370, 1387, 1473
PsuI	RGATCY	2 cut(s)	1076, 1682
PsyI	GACNNNGTC	1 cut(s)	1762
PvuII	CAGCTG	2 cut(s)	545, 1524
SacI	GAGCTC	1 cut(s)	1675
SapI	GCTCTTC	2 cut(s)	125, 2007
SaqAI	TTAA	7 cut(s)	114, 504, 750, 930, 1271, 1346, 1580
SatI	GCNGC	7 cut(s)	233, 543, 1525, 1862, 2127, 2213, 2429
Sau3AI	GATC	7 cut(s)	44, 1076, 1125, 1682, 1747, 2094, 2456
Sau96I	GGNCC	4 cut(s)	797, 896, 1845, 2040
SchI	GAGTC	1 cut(s)	2159
ScrFI	CCNGG	4 cut(s)	894, 1397, 1650, 2419
SduI	GDGCHC	4 cut(s)	1425, 1675, 1953, 2019
SfaNI	GCATC	5 cut(s)	455, 619, 1250, 1941, 2476
SfcI	CTRYAG	6 cut(s)	233, 1020, 1449, 1536, 1752, 2213
SinI	GGWCC	3 cut(s)	797, 1845, 2040
SmlI	CTYRAG	2 cut(s)	1528, 1973
SmoI	CTYRAG	2 cut(s)	1528, 1973
SpeI	ACTAGT	2 cut(s)	335, 1718
SphI	GCATGC	3 cut(s)	8, 910, 2245
SspI	AATATT	2 cut(s)	928, 982
SspMI	CTAG	9 cut(s)	327, 336, 615, 698, 903, 1296, 1329, 1719, 1929
SstI	GAGCTC	1 cut(s)	1675
StyD4I	CCNGG	4 cut(s)	892, 1395, 1648, 2417
StyI	CCWWGG	6 cut(s)	782, 1295, 1561, 1735, 2230, 2309
TaqI	TCGA	5 cut(s)	818, 1094, 1935, 2299, 2338
TatI	WGTACW	4 cut(s)	529, 582, 1802, 1969
TfiI	GAWTC	9 cut(s)	179, 254, 725, 857, 1217, 1307, 1595, 1922, 2365
Tru1I	TTAA	7 cut(s)	114, 504, 750, 930, 1271, 1346, 1580
Tru9I	TTAA	7 cut(s)	114, 504, 750, 930, 1271, 1346, 1580
TscAI	CASTG	8 cut(s)	232, 1235, 1255, 1357, 1767, 2059, 2121, 2296
TseFI	GTSAC	2 cut(s)	1893, 2291
TseI	GCWGC	7 cut(s)	232, 542, 1524, 1861, 2126, 2212, 2428
Tsp45I	GTSAC	2 cut(s)	1893, 2291
TspGWI	ACGGA	1 cut(s)	2063
TspRI	CASTG	8 cut(s)	232, 1235, 1255, 1357, 1767, 2059, 2121, 2296
Tth111I	GACNNNGTC	1 cut(s)	1762
Van91I	CCANNNNNTGG	1 cut(s)	142
VpaK11BI	GGWCC	3 cut(s)	797, 1845, 2040
VspI	ATTAAT	1 cut(s)	504
XagI	CCTNNNNNAGG	1 cut(s)	1149
XapI	RAATTY	8 cut(s)	19, 87, 566, 646, 688, 1138, 1224, 1905
XbaI	TCTAGA	1 cut(s)	614
XceI	RCATGY	4 cut(s)	8, 910, 1019, 2245
XmaJI	CCTAGG	1 cut(s)	1295
XmiI	GTMKAC	2 cut(s)	1731, 2283
XmnI	GAANNNNTTC	1 cut(s)	1138
XspI	CTAG	9 cut(s)	327, 336, 615, 698, 903, 1296, 1329, 1719, 1929
Zsp2I	ATGCAT	3 cut(s)	6, 10, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.