Rmu_sc0002395.1_g000015

Protein of unknown function (DUF3741)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002395.1
OG0006931
Physical Location & Seq
Forward (+)
59558 .. 60118
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002395.1_g000015.1.cds

Sequence Viewer

Length: 561 bp
atggcaaaaaagcgaaaaggatttggttgtaaaagttttaattatgagattactcttccacaagtacagaagaatgcagctgaggccatcataaatcagaaattcattgatgaaaagcacatcaggacagacggggtgaaccaccagtctagccaattatcaaaggcatttgagattttcaattctcataaagaattattcataaagctcctacaagacccaaattctcatctagcaaaacatattgaagacctcagagaatctcaggcagtaaaacatcagattaaatctccttctgacgtcaatgtttcagaaccaaggcaatgtgatggtcctgttggcaatctggcattgcaagatgagatttgcgttttttgcactcttattgggggaggttggtttggaggatgtgaaaataaaatagcttcagtgtttgtattagtgcttggtgaagaagaagaagaagaagaagaagaactggaaggggagagagagggtcagagagacatggaggaacagaagaataggggacagaaaaaagaaaagaaaaagataagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3741 DUF4378

Protein Analysis

186

Amino Acids

21.11

Weight (kDa)

5.61

Isoelectric Point (pI)

63.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 303
AcsI RAATTY 2 cut(s) 101, 223
AcuI CTGAAG 1 cut(s) 411
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 1 cut(s) 66
AgsI TTSAA 2 cut(s) 181, 248
AluBI AGCT 4 cut(s) 80, 208, 425, 558
AluI AGCT 4 cut(s) 80, 208, 425, 558
Alw26I GTCTC 1 cut(s) 498
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 2 cut(s) 101, 223
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 2 cut(s) 148, 461
AvaII GGWCC 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 95, 323
BcoDI GTCTC 1 cut(s) 498
BfaI CTAG 2 cut(s) 150, 233
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 332
BpiI GAAGAC 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 145, 483
Bse3DI GCAATG 2 cut(s) 329, 350
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 1 cut(s) 413
BseMI GCAATG 2 cut(s) 329, 350
BseMII CTCAG 3 cut(s) 72, 268, 278
BseNI ACTGG 2 cut(s) 145, 483
BseXI GCAGC 1 cut(s) 89
BshFI GGCC 1 cut(s) 86
BslFI GGGAC 1 cut(s) 543
BsmAI GTCTC 1 cut(s) 498
BsmFI GGGAC 1 cut(s) 543
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 1 cut(s) 86
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 3 cut(s) 73, 267, 277
BsrDI GCAATG 2 cut(s) 329, 350
BsrI ACTGG 2 cut(s) 145, 483
BssECI CCNNGG 1 cut(s) 317
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 300
BstDEI CTNAG 3 cut(s) 81, 254, 264
BstF5I GGATG 1 cut(s) 413
BstMAI GTCTC 1 cut(s) 498
BstMWI GCNNNNNNNGC 2 cut(s) 83, 375
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 255
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 413
BtsIMutI CAGTG 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 332
Csp6I GTAC 1 cut(s) 65
CviAII CATG 1 cut(s) 508
CviJI RGCY 6 cut(s) 80, 86, 153, 208, 425, 558
CviKI_1 RGCY 6 cut(s) 80, 86, 153, 208, 425, 558
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 3 cut(s) 81, 254, 264
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 1 cut(s) 511
FaiI YATR 6 cut(s) 45, 92, 189, 203, 243, 509
FaqI GGGAC 1 cut(s) 543
FatI CATG 1 cut(s) 507
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 2 cut(s) 150, 233
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 1 cut(s) 511
HinfI GANTC 1 cut(s) 260
HphI GGTGA 2 cut(s) 148, 461
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 6 cut(s) 99, 257, 282, 298, 313, 501
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 303, 476
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 77, 355, 378
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 375
HpyF3I CTNAG 3 cut(s) 81, 254, 264
HpySE526I ACGT 1 cut(s) 300
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 1 cut(s) 511
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 6 cut(s) 109, 158, 251, 332, 348, 464
Lsp1109I GCAGC 1 cut(s) 89
MaeI CTAG 2 cut(s) 150, 233
MaeII ACGT 1 cut(s) 300
MluCI AATT 6 cut(s) 40, 101, 155, 181, 194, 223
MnlI CCTC 6 cut(s) 76, 263, 386, 398, 487, 505
MseI TTAA 2 cut(s) 39, 285
MspA1I CMGCKG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 79
MwoI GCNNNNNNNGC 2 cut(s) 83, 375
NlaIII CATG 1 cut(s) 511
PctI GAATGC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SaqAI TTAA 2 cut(s) 39, 285
SatI GCNGC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 332
SetI ASST 7 cut(s) 82, 210, 255, 303, 397, 427, 560
SinI GGWCC 1 cut(s) 332
Sse9I AATT 6 cut(s) 40, 101, 155, 181, 194, 223
SspMI CTAG 2 cut(s) 150, 233
StyI CCWWGG 1 cut(s) 317
TaiI ACGT 1 cut(s) 303
TasI AATT 6 cut(s) 40, 101, 155, 181, 194, 223
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 2 cut(s) 39, 285
Tru9I TTAA 2 cut(s) 39, 285
TscAI CASTG 1 cut(s) 435
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 94, 126, 190
TspRI CASTG 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 2 cut(s) 101, 223
XspI CTAG 2 cut(s) 150, 233
ZraI GACGTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.