Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012612

Physical Location & Seq

Genomic Coordinates Forward (+)

1556322 .. 1559703

Gene Structure 3382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g02611.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCTGGTGATCTGAGCCTGAGGTGGGAGTTTAGGAGGAAGGACAATGATGATGATTCTTCAAGTGATGAATCTAAATCAAGTAGTGAGGCGGCCCTCGAGAAGCATAAACTGGTTTCCTCTTTGATTTCGGTTGAAAATGATGAAGGAAATGGAACTCATGGAGTTGAGCAGAATGTCAAGAGCAATCCTCATACTGAGGTCGGAACCAGGTCTTGGAAAGGCAAAAATGTGCTCTCCCAAAGGAGTGGAAAACAAAGTTCGATTCATGATGGCACAGAGAGGGATTCTTATGAAGAAGGCAGTAGAAAAAGGAGTAAAACCAGTGTTTACGAGCCTGCTGCTATGGATGAGGTTAAAAGATTCAGCGAGTCCTTATTAGAGGATCTTAGAGTGACAAGAGAAAAATTGTTACATTGGATGAGGCAGGAAATGCAAAAATTGGTGGCGGATGATACTCTTCCACCGCATGAACAGAGAGACGAAAGTTTTCGAGGGAAAAACCTCCAAGTGCAACATGGAGAATACGTTGAGAACACCACCTCTGAAGAGAACAAACAAGTGAATAACAAAAGGAAGTTTGAAGAAAATATTATGGTTCATCATCAAAATAACTCTCGGAAAGATGTTATGGTGCCGTATGACACCAACTTGGAGGATAATGTATTTGCACGACATCATAACAACTTCAAGGGGACGATCCAAGCGCAGCATCAGAAGAACTTTAAAGAAGCGGATGTTCAAGTGCAATGTCGAAGCAACTTTGAGTCCGGCATGAGAGCTGACAAATATAACATTGGATCTTTGGATGGTACTGCTAGAAGCAATCAAGCAACTGGTTGTGATAATGGCTATAGTGTACTTGGAGAACAAGTTGATAATGGCCAAGCCATTAGAGCCTTGATACCAGCGGAAAAGTTTGGTTCATTTGTCAAGCCAAATTTTCAGTCCTGTTCCACAGAAATAAATGTCCAGAGGCAGCATCAGATGAACTATCTATTAGGCATAAGACCTGAAAGTTACAGTTGCAGATCTTTGGAGAGACCTTTGAAAGGCAAAGATAGAGCCCAATCCACTAATTGCCAACCACGGATCGGACATCAAGTTGATTGTGTTCGAGATGTTAGACCTGTTGCATCATCTGAAATAGAAAGAGGAGTGAGGTTGACAGTACCTAACGGGCCAAGTTTTTCTTCCAATGTTTCCAGTCAGTTGCTGGAAACAGATCAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

412

Amino Acids

46.67

Weight (kDa)

6.42

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02611 FvH4_5g02611 FvH4_5g02611
malus_domestica	MD06G1085200.v1.1
prunus_persica	Prupe.5G101200_v2.0.a1 Prupe.5G101200_v2.0.a1 Prupe.5G101200_v2.0.a1
pyrus_communis	pycom06g08130
rosa_chinensis	RchiOBHm_Chr7g0197481
rosa_laevigata	RLG00000003937
rosa_multiflora	Rmu_sc0002167.1_g000002 Rmu_sc0013361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00258430
rosa_rugosa	Rorug07G0040000
rosa_samantha	Rh7AG165100 Rh7BG167200 Rh7CG173600 Rh7DG166500
rosa_wichuraiana	Rw7G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	634
AccB7I	CCANNNNNTGG	1 cut(s)	216
AciI	CCGC	5 cut(s)	92, 449, 467, 734, 911
AclWI	GGATC	4 cut(s)	393, 694, 808, 1100
AcoI	YGGCCR	1 cut(s)	883
AcsI	RAATTY	1 cut(s)	940
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	3 cut(s)	814, 861, 1173
AfiI	CCNNNNNNNGG	4 cut(s)	25, 216, 1052, 1094
AgsI	TTSAA	6 cut(s)	63, 137, 584, 691, 743, 1051
AjnI	CCWGG	1 cut(s)	209
AjuI	GAANNNNNNNTTGG	4 cut(s)	199, 231, 1177, 1209
AluBI	AGCT	1 cut(s)	782
AluI	AGCT	1 cut(s)	782
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	474, 1036
AlwI	GGATC	4 cut(s)	393, 694, 808, 1100
AlwNI	CAGNNNCTG	1 cut(s)	1216
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	3 cut(s)	93, 883, 1181
ApeKI	GCWGC	3 cut(s)	341, 709, 979
ApoI	RAATTY	1 cut(s)	940
ArsI	GACNNNNNNTTYG	2 cut(s)	932, 964
Asp700I	GAANNNNTTC	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	2 cut(s)	94, 1181
AsuHPI	GGTGA	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	98
AxyI	CCTNAGG	1 cut(s)	20
BalI	TGGCCA	1 cut(s)	885
BanI	GGYRCC	1 cut(s)	634
BanII	GRGCYC	1 cut(s)	1069
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	328, 721, 991
BccI	CCATC	2 cut(s)	266, 803
BceAI	ACGGC	1 cut(s)	622
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	474, 1036
BfaI	CTAG	1 cut(s)	819
BfmI	CTRYAG	1 cut(s)	853
BglII	AGATCT	1 cut(s)	1031
BisI	GCNGC	4 cut(s)	93, 342, 710, 980
BlsI	GCNGC	4 cut(s)	94, 343, 711, 981
Bme1390I	CCNGG	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	94, 1181
BmiI	GGNNCC	2 cut(s)	208, 636
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	3 cut(s)	721, 991, 1145
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BsaI	GGTCTC	1 cut(s)	1036
BsaJI	CCNNGG	1 cut(s)	1088
BsaXI	ACNNNNNCTCC	4 cut(s)	513, 543, 858, 888
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 216, 1052, 1094
Bse1I	ACTGG	4 cut(s)	117, 324, 841, 1206
Bse21I	CCTNAGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	755
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	1088
BseGI	GGATG	5 cut(s)	355, 426, 457, 742, 814
BseLI	CCNNNNNNNGG	4 cut(s)	25, 216, 1052, 1094
BseMI	GCAATG	1 cut(s)	755
BseMII	CTCAG	3 cut(s)	5, 11, 189
BseNI	ACTGG	4 cut(s)	117, 324, 841, 1206
BseRI	GAGGAG	1 cut(s)	1170
BseXI	GCAGC	3 cut(s)	328, 721, 991
BshFI	GGCC	3 cut(s)	95, 885, 1183
BshNI	GGYRCC	1 cut(s)	634
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	771
BslFI	GGGAC	1 cut(s)	709
BslI	CCNNNNNNNGG	4 cut(s)	25, 216, 1052, 1094
BsmAI	GTCTC	2 cut(s)	474, 1036
BsmBI	CGTCTC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	709
BsnI	GGCC	3 cut(s)	95, 885, 1183
Bso31I	GGTCTC	1 cut(s)	1036
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	237, 1069
Bsp143I	GATC	7 cut(s)	10, 385, 699, 800, 1031, 1092, 1225
BspACI	CCGC	5 cut(s)	92, 449, 467, 734, 911
BspANI	GGCC	3 cut(s)	95, 885, 1183
BspCNI	CTCAG	3 cut(s)	6, 12, 190
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	208, 636
BspPI	GGATC	4 cut(s)	393, 694, 808, 1100
BspT107I	GGYRCC	1 cut(s)	634
BspTNI	GGTCTC	1 cut(s)	1036
BsrDI	GCAATG	1 cut(s)	755
BsrI	ACTGG	4 cut(s)	117, 324, 841, 1206
BssECI	CCNNGG	1 cut(s)	1088
BssMI	GATC	7 cut(s)	10, 385, 699, 800, 1031, 1092, 1225
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	2 cut(s)	1025, 1171
Bst6I	CTCTTC	2 cut(s)	465, 543
BstAPI	GCANNNNNTGC	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	4 cut(s)	14, 20, 198, 389
BstDSI	CCRYGG	1 cut(s)	1088
BstENI	CCTNNNNNAGG	1 cut(s)	1050
BstF5I	GGATG	5 cut(s)	355, 426, 457, 742, 814
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	7 cut(s)	13, 388, 702, 803, 1034, 1095, 1228
BstMAI	GTCTC	2 cut(s)	474, 1036
BstMBI	GATC	7 cut(s)	10, 385, 699, 800, 1031, 1092, 1225
BstMWI	GCNNNNNNNGC	2 cut(s)	433, 896
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	853
BstV1I	GCAGC	3 cut(s)	328, 721, 991
BstX2I	RGATCY	3 cut(s)	385, 800, 1031
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	3 cut(s)	385, 800, 1031
Bsu36I	CCTNAGG	1 cut(s)	20
BsuRI	GGCC	3 cut(s)	95, 885, 1183
BtgI	CCRYGG	1 cut(s)	1088
BtsCI	GGATG	5 cut(s)	355, 426, 457, 742, 814
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	339
CaiI	CAGNNNCTG	1 cut(s)	1216
CciI	TCATGA	1 cut(s)	268
CfoI	GCGC	1 cut(s)	709
Cfr13I	GGNCC	2 cut(s)	94, 1181
CsiI	ACCWGGT	1 cut(s)	209
Csp6I	GTAC	3 cut(s)	813, 860, 1172
CviAII	CATG	5 cut(s)	161, 269, 470, 518, 775
CviQI	GTAC	3 cut(s)	813, 860, 1172
DdeI	CTNAG	4 cut(s)	14, 20, 198, 389
DpnI	GATC	7 cut(s)	12, 387, 701, 802, 1033, 1094, 1227
DpnII	GATC	7 cut(s)	10, 385, 699, 800, 1031, 1092, 1225
DraI	TTTAAA	1 cut(s)	727
EaeI	YGGCCR	1 cut(s)	883
Eam1104I	CTCTTC	2 cut(s)	465, 543
EarI	CTCTTC	2 cut(s)	465, 543
EciI	GGCGGA	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	1069
Eco31I	GGTCTC	1 cut(s)	1036
Eco57I	CTGAAG	1 cut(s)	567
Eco81I	CCTNAGG	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	1050
EcoRII	CCWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	1069
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	5 cut(s)	164, 272, 473, 521, 778
FalI	AAGNNNNNCTT	2 cut(s)	1177, 1209
FaqI	GGGAC	1 cut(s)	709
FatI	CATG	5 cut(s)	160, 268, 469, 517, 774
Fnu4HI	GCNGC	4 cut(s)	93, 342, 710, 980
FokI	GGATG	5 cut(s)	362, 433, 464, 749, 821
FriOI	GRGCYC	1 cut(s)	1069
Fsp4HI	GCNGC	4 cut(s)	93, 342, 710, 980
FspBI	CTAG	1 cut(s)	819
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	4 cut(s)	93, 342, 710, 980
HaeIII	GGCC	3 cut(s)	95, 885, 1183
HapII	CCGG	1 cut(s)	771
HhaI	GCGC	1 cut(s)	709
Hin1II	CATG	5 cut(s)	164, 272, 473, 521, 778
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HincII	GTYRAC	1 cut(s)	1167
HindII	GTYRAC	1 cut(s)	1167
HinfI	GANTC	7 cut(s)	56, 71, 265, 287, 363, 371, 767
HpaII	CCGG	1 cut(s)	771
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	3 cut(s)	331, 860, 1167
Hpy188I	TCNGA	8 cut(s)	15, 206, 547, 621, 717, 987, 1097, 1144
Hpy188III	TCNNGA	5 cut(s)	100, 181, 269, 973, 1118
Hpy8I	GTNNAC	3 cut(s)	331, 860, 1167
HpyAV	CCTTC	3 cut(s)	34, 140, 293
HpyCH4III	ACNGT	2 cut(s)	1025, 1171
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	6 cut(s)	436, 514, 671, 748, 1029, 1136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	433, 896
HpyF3I	CTNAG	4 cut(s)	14, 20, 198, 389
HpySE526I	ACGT	1 cut(s)	528
Hsp92II	CATG	5 cut(s)	164, 272, 473, 521, 778
HspAI	GCGC	1 cut(s)	707
Kzo9I	GATC	7 cut(s)	10, 385, 699, 800, 1031, 1092, 1225
Lsp1109I	GCAGC	3 cut(s)	328, 721, 991
LweI	GCATC	3 cut(s)	721, 991, 1145
MabI	ACCWGGT	1 cut(s)	209
MaeI	CTAG	1 cut(s)	819
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	3 cut(s)	394, 411, 1019
MalI	GATC	7 cut(s)	12, 387, 701, 802, 1033, 1094, 1227
MboI	GATC	7 cut(s)	10, 385, 699, 800, 1031, 1092, 1225
MboII	GAAGA	7 cut(s)	51, 308, 452, 560, 596, 730, 1185
MflI	RGATCY	3 cut(s)	385, 800, 1031
MhlI	GDGCHC	2 cut(s)	237, 1069
MlsI	TGGCCA	1 cut(s)	885
MluCI	AATT	4 cut(s)	407, 440, 940, 1078
MluNI	TGGCCA	1 cut(s)	885
MlyI	GAGTC	2 cut(s)	380, 776
MmeI	TCCRAC	1 cut(s)	184
Mox20I	TGGCCA	1 cut(s)	885
MroXI	GAANNNNTTC	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	885
MseI	TTAA	2 cut(s)	357, 726
Msp20I	TGGCCA	1 cut(s)	885
MspA1I	CMGCKG	1 cut(s)	911
MspI	CCGG	1 cut(s)	771
MspR9I	CCNGG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	211
MwoI	GCNNNNNNNGC	2 cut(s)	433, 896
NdeII	GATC	7 cut(s)	10, 385, 699, 800, 1031, 1092, 1225
NlaIII	CATG	5 cut(s)	164, 272, 473, 521, 778
NlaIV	GGNNCC	2 cut(s)	208, 636
NmuCI	GTSAC	1 cut(s)	394
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	5 cut(s)	56, 71, 265, 287, 363
PflMI	CCANNNNNTGG	1 cut(s)	216
PkrI	GCNGC	4 cut(s)	94, 343, 711, 981
PleI	GAGTC	2 cut(s)	379, 775
PpsI	GAGTC	2 cut(s)	379, 775
Psp6I	CCWGG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	2 cut(s)	208, 636
PspPI	GGNCC	2 cut(s)	94, 1181
PstNI	CAGNNNCTG	1 cut(s)	1216
PsuI	RGATCY	3 cut(s)	385, 800, 1031
RsaI	GTAC	3 cut(s)	814, 861, 1173
RsaNI	GTAC	3 cut(s)	813, 860, 1172
SaqAI	TTAA	2 cut(s)	357, 726
SatI	GCNGC	4 cut(s)	93, 342, 710, 980
Sau3AI	GATC	7 cut(s)	10, 385, 699, 800, 1031, 1092, 1225
Sau96I	GGNCC	2 cut(s)	94, 1181
SchI	GAGTC	2 cut(s)	380, 776
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	2 cut(s)	237, 1069
SexAI	ACCWGGT	1 cut(s)	209
SfaNI	GCATC	3 cut(s)	721, 991, 1145
SfcI	CTRYAG	1 cut(s)	853
Sfr274I	CTCGAG	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	4 cut(s)	407, 440, 940, 1078
SsiI	CCGC	5 cut(s)	92, 449, 467, 734, 911
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	1 cut(s)	819
StyD4I	CCNGG	1 cut(s)	209
TaaI	ACNGT	2 cut(s)	1025, 1171
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	5 cut(s)	99, 263, 493, 754, 1117
TasI	AATT	4 cut(s)	407, 440, 940, 1078
TatI	WGTACW	1 cut(s)	859
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	5 cut(s)	56, 71, 265, 287, 363
Tru1I	TTAA	2 cut(s)	357, 726
Tru9I	TTAA	2 cut(s)	357, 726
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	3 cut(s)	341, 709, 979
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	8 cut(s)	84, 159, 257, 309, 486, 590, 915, 1004
TspGWI	ACGGA	1 cut(s)	1105
TspRI	CASTG	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	216
XagI	CCTNNNNNAGG	1 cut(s)	1050
XapI	RAATTY	1 cut(s)	940
XcmI	CCANNNNNNNNNTGG	2 cut(s)	515, 1213
XhoI	CTCGAG	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.