Rmu_sc0013361.1_g000004

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013361.1
Physical Location & Seq
Reverse (-)
19618 .. 21372
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013361.1_g000004.1.cds

Sequence Viewer

Length: 1755 bp
atgggtggtgacctgaggtgggagtttaggaggaaggacaatggcgatgagtcttcaagtgatgaatctaaatcaagtagtgaggcagctcacgagaagcataaactggtttcctctttgatttcggttgaaaatgatgaagaaattggaactcatagagtcaagcagaatgtcacgagcaatcctcatacagaggttaaaattatgactgggaaaggcaaaaatgtgcattcacaaaggagcggaaaggaaagttcaattcatgatggcacagagagggattctcatgaagaaggcagtagaaaaaagagtaaaaccagtgtttatgagcccgctgccatggatgagattaagagattcatggagtccttattagaggatcttaaagtgacaagagagaatttgttttcatggatgaggcaggaaatgcaaaaattggtgatggatgatactcatccacctcttgaacggagagaacaaagttttggagagaaaaatctcctagtgcaacatggagaaatcgttgagaacaccacctctaaggagaatagacaagtgaacaaaagaaagtttgaagagaatattcagatacgtcatcaaaataactatccgaaagatgttttggtgccgcatgaaaccaactttgaggataatgtatttgcacaacatcataacaacttaaaggagacaatccaagtgcagcatcagaacaactccgaagaggcagatgttcaagtgcaatctcaaagcaactttgaatctggcatgagagctcaaaaatgtaatattggatctttggagggtactgctagaagcaatcaagcaagaggttatgataatggctatcgagtacttggaaaacaagttgataatggccaagacactagagccttgataccaagggaaaagtttggttcacttgtcaagccaaattttcagtcctgttccacagaaattaatgcccagaggcagcatcagacaaactatctattgggcataagacctccaaattacaattgcagatctttggagagtcctttgaaaggcaaagagagagctcaatctaataattgccatccatggatcgaacatcaagttgattgtcttcgagatattggacctgttgcatcgtctgaaatagaaagaagagcgaagttgacagtacctatcgagtcaagtttttcttccaatgtttccagtcaggtatcttcttccatgtatttgacattaccctctgtgttaactaggccctatggtgaggatcctatccttggcacttcttcatatagttatattcaaccaacagttgccggaaacagattaggcatgaactatgagaaagcaaacacaatgctcaaagtaaatgctcattatggaaactttacaggcatgagtcaccaagtaagaaatggaagcattgctcaaatagggtcccaaaatgtgagttatagtgataggcaaagcatccgtagttcaagtattggaactgggttcccaggtgcacttcatcaaggtatggattttggtgttagctttccaagccaagcaagtatcgaatatcttcctcgacatgaaaagaacacaaggggtttgaggatgaatgaaggagccaaaatgttctccggaggaagctatgctgtacccgaagactatgtttccaacaattttttcagtcgttctgttagtaaacctcaaggtacacttcaagcatttcaaaaagaaaaccttgaaaagggcaatatgttcccaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

584

Amino Acids

65.88

Weight (kDa)

7.36

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 625
AccBSI CCGCTC 1 cut(s) 243
AccIII TCCGGA 1 cut(s) 1622
AciI CCGC 3 cut(s) 243, 333, 629
AclWI GGATC 5 cut(s) 387, 799, 1091, 1256, 1269
AcoI YGGCCR 1 cut(s) 874
AcsI RAATTY 2 cut(s) 400, 931
AfaI GTAC 5 cut(s) 805, 852, 1164, 1641, 1699
AfiI CCNNNNNNNGG 4 cut(s) 19, 1043, 1271, 1732
AjnI CCWGG 1 cut(s) 1495
AjuI GAANNNNNNNTTGG 6 cut(s) 468, 500, 605, 637, 1652, 1684
AluBI AGCT 5 cut(s) 89, 773, 1058, 1533, 1632
AluI AGCT 5 cut(s) 89, 773, 1058, 1533, 1632
Alw21I GWGCWC 3 cut(s) 775, 1060, 1504
Alw26I GTCTC 1 cut(s) 680
Alw44I GTGCAC 1 cut(s) 1500
AlwI GGATC 5 cut(s) 387, 799, 1091, 1256, 1269
Aor13HI TCCGGA 1 cut(s) 1622
AoxI GGCC 2 cut(s) 874, 1247
ApaLI GTGCAC 1 cut(s) 1500
ApeKI GCWGC 4 cut(s) 86, 335, 700, 970
ApoI RAATTY 2 cut(s) 400, 931
ArsI GACNNNNNNTTYG 2 cut(s) 923, 955
AseI ATTAAT 1 cut(s) 957
Asp700I GAANNNNTTC 1 cut(s) 1560
AspS9I GGNCC 3 cut(s) 1118, 1248, 1431
AsuHPI GGTGA 4 cut(s) 20, 451, 1268, 1388
AvaII GGWCC 2 cut(s) 1118, 1431
AxyI CCTNAGG 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 1504
BalI TGGCCA 1 cut(s) 876
BamHI GGATCC 1 cut(s) 1261
BanI GGYRCC 1 cut(s) 625
BanII GRGCYC 3 cut(s) 333, 775, 1060
BauI CACGAG 2 cut(s) 92, 175
BbsI GAAGAC 3 cut(s) 45, 1097, 1653
Bbv12I GWGCWC 3 cut(s) 775, 1060, 1504
BbvI GCAGC 4 cut(s) 98, 322, 712, 982
BccI CCATC 3 cut(s) 260, 436, 1083
BciT130I CCWGG 1 cut(s) 1497
BcoDI GTCTC 1 cut(s) 680
BfaI CTAG 4 cut(s) 503, 810, 885, 1245
BglII AGATCT 1 cut(s) 1022
BisI GCNGC 5 cut(s) 87, 336, 629, 701, 971
BlsI GCNGC 5 cut(s) 88, 337, 630, 702, 972
BmcAI AGTACT 1 cut(s) 852
Bme1390I CCNGG 1 cut(s) 1497
Bme18I GGWCC 2 cut(s) 1118, 1431
BmgT120I GGNCC 3 cut(s) 1118, 1248, 1431
BmiI GGNNCC 6 cut(s) 627, 1263, 1432, 1433, 1493, 1609
BmrFI CCNGG 1 cut(s) 1497
BmrI ACTGGG 2 cut(s) 219, 1497
BmsI GCATC 4 cut(s) 712, 982, 1136, 1473
BmuI ACTGGG 2 cut(s) 219, 1497
BpiI GAAGAC 3 cut(s) 45, 1097, 1653
BplI GAGNNNNNCTC 4 cut(s) 169, 201, 268, 300
BpuEI CTTGAG 1 cut(s) 1677
BsaBI GATNNNNATC 1 cut(s) 453
BsaJI CCNNGG 5 cut(s) 339, 899, 1079, 1270, 1495
BsaWI WCCGGW 1 cut(s) 1622
BsaXI ACNNNNNCTCC 2 cut(s) 507, 537
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 1043, 1271, 1732
Bse1I ACTGG 5 cut(s) 111, 214, 318, 1197, 1492
Bse21I CCTNAGG 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 1416
Bse8I GATNNNNATC 1 cut(s) 453
BseAI TCCGGA 1 cut(s) 1622
BseBI CCWGG 1 cut(s) 1497
BseDI CCNNGG 5 cut(s) 339, 899, 1079, 1270, 1495
BseGI GGATG 7 cut(s) 349, 420, 451, 454, 1075, 1464, 1602
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 4 cut(s) 19, 1043, 1271, 1732
BseMI GCAATG 1 cut(s) 1416
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 5 cut(s) 111, 214, 318, 1197, 1492
BseSI GKGCMC 1 cut(s) 1504
BseXI GCAGC 4 cut(s) 98, 322, 712, 982
BsgI GTGCAG 1 cut(s) 719
BshFI GGCC 2 cut(s) 876, 1249
BshNI GGYRCC 1 cut(s) 625
BsiHKAI GWGCWC 3 cut(s) 775, 1060, 1504
BsiSI CCGG 2 cut(s) 1311, 1623
BslFI GGGAC 1 cut(s) 1417
BslI CCNNNNNNNGG 4 cut(s) 19, 1043, 1271, 1732
BsmAI GTCTC 1 cut(s) 680
BsmFI GGGAC 1 cut(s) 1417
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 2 cut(s) 876, 1249
Bsp1286I GDGCHC 4 cut(s) 333, 775, 1060, 1504
Bsp13I TCCGGA 1 cut(s) 1622
Bsp143I GATC 5 cut(s) 379, 791, 1022, 1083, 1261
Bsp19I CCATGG 2 cut(s) 339, 1079
BspACI CCGC 3 cut(s) 243, 333, 629
BspANI GGCC 2 cut(s) 876, 1249
BspCNI CTCAG 1 cut(s) 6
BspEI TCCGGA 1 cut(s) 1622
BspHI TCATGA 2 cut(s) 262, 286
BspLI GGNNCC 6 cut(s) 627, 1263, 1432, 1433, 1493, 1609
BspPI GGATC 5 cut(s) 387, 799, 1091, 1256, 1269
BspQI GCTCTTC 1 cut(s) 1141
BspT107I GGYRCC 1 cut(s) 625
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 1416
BsrI ACTGG 5 cut(s) 111, 214, 318, 1197, 1492
BssECI CCNNGG 5 cut(s) 339, 899, 1079, 1270, 1495
BssMI GATC 5 cut(s) 379, 791, 1022, 1083, 1261
BssSI CACGAG 2 cut(s) 92, 175
BssT1I CCWWGG 4 cut(s) 339, 899, 1079, 1270
Bst2BI CACGAG 2 cut(s) 92, 175
Bst2UI CCWGG 1 cut(s) 1497
Bst4CI ACNGT 2 cut(s) 1162, 1306
Bst6I CTCTTC 3 cut(s) 570, 714, 1141
BstAPI GCANNNNNTGC 1 cut(s) 427
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 14, 540
BstDSI CCRYGG 2 cut(s) 339, 1079
BstEII GGTNACC 1 cut(s) 8
BstENI CCTNNNNNAGG 2 cut(s) 1041, 1730
BstF5I GGATG 7 cut(s) 349, 420, 451, 454, 1075, 1464, 1602
BstKTI GATC 5 cut(s) 382, 794, 1025, 1086, 1264
BstMAI GTCTC 1 cut(s) 680
BstMBI GATC 5 cut(s) 379, 791, 1022, 1083, 1261
BstMWI GCNNNNNNNGC 2 cut(s) 427, 1539
BstNI CCWGG 1 cut(s) 1497
BstPI GGTNACC 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 1495
BstSLI GKGCMC 1 cut(s) 1504
BstV1I GCAGC 4 cut(s) 98, 322, 712, 982
BstV2I GAAGAC 3 cut(s) 45, 1097, 1653
BstX2I RGATCY 4 cut(s) 379, 791, 1022, 1261
BstYI RGATCY 4 cut(s) 379, 791, 1022, 1261
Bsu36I CCTNAGG 1 cut(s) 14
BsuRI GGCC 2 cut(s) 876, 1249
BtgI CCRYGG 2 cut(s) 339, 1079
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 7 cut(s) 349, 420, 451, 454, 1075, 1464, 1602
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 333
CciI TCATGA 2 cut(s) 262, 286
Cfr13I GGNCC 3 cut(s) 1118, 1248, 1431
Csp6I GTAC 5 cut(s) 804, 851, 1163, 1640, 1698
CviQI GTAC 5 cut(s) 804, 851, 1163, 1640, 1698
DdeI CTNAG 2 cut(s) 14, 540
DpnI GATC 5 cut(s) 381, 793, 1024, 1085, 1263
DpnII GATC 5 cut(s) 379, 791, 1022, 1083, 1261
EaeI YGGCCR 1 cut(s) 874
Eam1104I CTCTTC 3 cut(s) 570, 714, 1141
EarI CTCTTC 3 cut(s) 570, 714, 1141
Ecl136II GAGCTC 2 cut(s) 773, 1058
Eco130I CCWWGG 4 cut(s) 339, 899, 1079, 1270
Eco24I GRGCYC 3 cut(s) 333, 775, 1060
Eco47I GGWCC 2 cut(s) 1118, 1431
Eco53kI GAGCTC 2 cut(s) 773, 1058
Eco81I CCTNAGG 1 cut(s) 14
Eco91I GGTNACC 1 cut(s) 8
EcoICRI GAGCTC 2 cut(s) 773, 1058
EcoNI CCTNNNNNAGG 2 cut(s) 1041, 1730
EcoO109I RGGNCCY 2 cut(s) 1248, 1431
EcoO65I GGTNACC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 1495
EcoT14I CCWWGG 4 cut(s) 339, 899, 1079, 1270
EcoT38I GRGCYC 3 cut(s) 333, 775, 1060
ErhI CCWWGG 4 cut(s) 339, 899, 1079, 1270
FalI AAGNNNNNCTT 6 cut(s) 1168, 1200, 1686, 1718, 1710, 1742
FaqI GGGAC 1 cut(s) 1417
FauI CCCGC 1 cut(s) 340
Fnu4HI GCNGC 5 cut(s) 87, 336, 629, 701, 971
FokI GGATG 7 cut(s) 356, 427, 441, 458, 1062, 1451, 1609
FriOI GRGCYC 3 cut(s) 333, 775, 1060
Fsp4HI GCNGC 5 cut(s) 87, 336, 629, 701, 971
FspBI CTAG 4 cut(s) 503, 810, 885, 1245
GluI GCNGC 5 cut(s) 87, 336, 629, 701, 971
HaeIII GGCC 2 cut(s) 876, 1249
HapII CCGG 2 cut(s) 1311, 1623
HincII GTYRAC 2 cut(s) 1158, 1242
HindII GTYRAC 2 cut(s) 1158, 1242
HpaI GTTAAC 1 cut(s) 1242
HpaII CCGG 2 cut(s) 1311, 1623
HphI GGTGA 4 cut(s) 20, 451, 1268, 1388
Hpy166II GTNNAC 7 cut(s) 559, 917, 1158, 1242, 1502, 1688, 1700
Hpy188I TCNGA 6 cut(s) 588, 612, 708, 718, 978, 1135
Hpy188III TCNNGA 7 cut(s) 92, 175, 263, 287, 464, 1109, 1623
Hpy8I GTNNAC 7 cut(s) 559, 917, 1158, 1242, 1502, 1688, 1700
HpyAV CCTTC 3 cut(s) 28, 287, 1598
HpyCH4III ACNGT 2 cut(s) 1162, 1306
HpyCH4IV ACGT 1 cut(s) 592
HpyCH4V TGCA 9 cut(s) 229, 430, 508, 662, 700, 739, 1020, 1127, 1502
HpyF10VI GCNNNNNNNGC 2 cut(s) 427, 1539
HpyF3I CTNAG 2 cut(s) 14, 540
HpySE526I ACGT 1 cut(s) 592
KflI GGGWCCC 1 cut(s) 1431
Kpn2I TCCGGA 1 cut(s) 1622
KspAI GTTAAC 1 cut(s) 1242
Kzo9I GATC 5 cut(s) 379, 791, 1022, 1083, 1261
LguI GCTCTTC 1 cut(s) 1141
LmnI GCTCC 2 cut(s) 240, 1607
Lsp1109I GCAGC 4 cut(s) 98, 322, 712, 982
LweI GCATC 4 cut(s) 712, 982, 1136, 1473
MaeI CTAG 4 cut(s) 503, 810, 885, 1245
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 4 cut(s) 8, 172, 388, 1394
MalI GATC 5 cut(s) 381, 793, 1024, 1085, 1263
MbiI CCGCTC 1 cut(s) 243
MboI GATC 5 cut(s) 379, 791, 1022, 1083, 1261
MfeI CAATTG 1 cut(s) 1015
MflI RGATCY 4 cut(s) 379, 791, 1022, 1261
MhlI GDGCHC 4 cut(s) 333, 775, 1060, 1504
MlsI TGGCCA 1 cut(s) 876
MluNI TGGCCA 1 cut(s) 876
MlyI GAGTC 6 cut(s) 59, 168, 374, 1042, 1181, 1402
MmeI TCCRAC 1 cut(s) 1683
Mox20I TGGCCA 1 cut(s) 876
MroI TCCGGA 1 cut(s) 1622
MroXI GAANNNNTTC 1 cut(s) 1560
MscI TGGCCA 1 cut(s) 876
MseI TTAA 6 cut(s) 198, 351, 384, 680, 957, 1241
Msp20I TGGCCA 1 cut(s) 876
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 2 cut(s) 1311, 1623
MspR9I CCNGG 1 cut(s) 1497
MunI CAATTG 1 cut(s) 1015
Mva1269I GAATGC 1 cut(s) 229
MvaI CCWGG 1 cut(s) 1497
MwoI GCNNNNNNNGC 2 cut(s) 427, 1539
NcoI CCATGG 2 cut(s) 339, 1079
NdeII GATC 5 cut(s) 379, 791, 1022, 1083, 1261
NlaIV GGNNCC 6 cut(s) 627, 1263, 1432, 1433, 1493, 1609
NmuCI GTSAC 4 cut(s) 8, 172, 388, 1394
PagI TCATGA 2 cut(s) 262, 286
PciSI GCTCTTC 1 cut(s) 1141
PctI GAATGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 1560
PfeI GAWTC 4 cut(s) 65, 281, 357, 758
PkrI GCNGC 5 cut(s) 88, 337, 630, 702, 972
PleI GAGTC 6 cut(s) 58, 167, 373, 1041, 1180, 1401
PpsI GAGTC 6 cut(s) 58, 167, 373, 1041, 1180, 1401
PpuMI RGGWCCY 1 cut(s) 1431
PshBI ATTAAT 1 cut(s) 957
Psp124BI GAGCTC 2 cut(s) 775, 1060
Psp5II RGGWCCY 1 cut(s) 1431
Psp6I CCWGG 1 cut(s) 1495
PspEI GGTNACC 1 cut(s) 8
PspGI CCWGG 1 cut(s) 1495
PspN4I GGNNCC 6 cut(s) 627, 1263, 1432, 1433, 1493, 1609
PspPI GGNCC 3 cut(s) 1118, 1248, 1431
PspPPI RGGWCCY 1 cut(s) 1431
PsuI RGATCY 4 cut(s) 379, 791, 1022, 1261
RsaI GTAC 5 cut(s) 805, 852, 1164, 1641, 1699
RsaNI GTAC 5 cut(s) 804, 851, 1163, 1640, 1698
SacI GAGCTC 2 cut(s) 775, 1060
SapI GCTCTTC 1 cut(s) 1141
SaqAI TTAA 6 cut(s) 198, 351, 384, 680, 957, 1241
SatI GCNGC 5 cut(s) 87, 336, 629, 701, 971
Sau3AI GATC 5 cut(s) 379, 791, 1022, 1083, 1261
Sau96I GGNCC 3 cut(s) 1118, 1248, 1431
ScaI AGTACT 1 cut(s) 852
SchI GAGTC 6 cut(s) 59, 168, 374, 1042, 1181, 1402
ScrFI CCNGG 1 cut(s) 1497
SduI GDGCHC 4 cut(s) 333, 775, 1060, 1504
SfaNI GCATC 4 cut(s) 712, 982, 1136, 1473
SinI GGWCC 2 cut(s) 1118, 1431
SmlI CTYRAG 1 cut(s) 1692
SmoI CTYRAG 1 cut(s) 1692
SsiI CCGC 3 cut(s) 243, 333, 629
SspI AATATT 2 cut(s) 583, 787
SspMI CTAG 4 cut(s) 503, 810, 885, 1245
SstI GAGCTC 2 cut(s) 775, 1060
StyD4I CCNGG 1 cut(s) 1495
StyI CCWWGG 4 cut(s) 339, 899, 1079, 1270
TaaI ACNGT 2 cut(s) 1162, 1306
TaiI ACGT 1 cut(s) 595
TaqI TCGA 6 cut(s) 847, 1086, 1108, 1170, 1554, 1567
TatI WGTACW 1 cut(s) 850
TauI GCSGC 1 cut(s) 631
TfiI GAWTC 4 cut(s) 65, 281, 357, 758
Tru1I TTAA 6 cut(s) 198, 351, 384, 680, 957, 1241
Tru9I TTAA 6 cut(s) 198, 351, 384, 680, 957, 1241
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 4 cut(s) 8, 172, 388, 1394
TseI GCWGC 4 cut(s) 86, 335, 700, 970
Tsp45I GTSAC 4 cut(s) 8, 172, 388, 1394
TspGWI ACGGA 2 cut(s) 484, 1457
TspRI CASTG 1 cut(s) 325
VneI GTGCAC 1 cut(s) 1500
VpaK11BI GGWCC 2 cut(s) 1118, 1431
VspI ATTAAT 1 cut(s) 957
XagI CCTNNNNNAGG 2 cut(s) 1041, 1730
XapI RAATTY 2 cut(s) 400, 931
XcmI CCANNNNNNNNNTGG 1 cut(s) 1406
XmnI GAANNNNTTC 1 cut(s) 1560
XspI CTAG 4 cut(s) 503, 810, 885, 1245
ZrmI AGTACT 1 cut(s) 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.