Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012612

Physical Location & Seq

Genomic Coordinates Forward (+)

20903251 .. 20905948

Gene Structure 2698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1085200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGTCGCCTAGCTTTGGGATGGGTGATGAGGTTAAACAGCAAATGTGGGAGTTCAGGAGGAAGGACAATGACAATGATTCTTCAAGTGACGATTCTAAATCAAGTAGTGAGGCGGCTCACGAGAAGCGTAAACTGGTTTCCGGTTTGATTTCACTTGCAAATGATGCAGCAGTCGATAACTGCAGAGCTCAGCAAACTGGCATGTTCATTCCTTGTGGGGAAGATCAAAACATGTCAAAGAAAGGCAAAAGGGTGCACCTTAGGAGTAAGAAGAATAGTAGAAAAAAGAGTAAAACTGGCGTTTACAATTCTGCTGCTGCTTTGGATGAACTTAAAATCTTCAAGGAGTCCCTATTAGAGAATCTTAAAGTGACGAGAGAAAATTTGCTTTCATGGATGAGGAAGGAAATGCAAAAACTGGTGGATGATGACGCTGCCCCGCAACTTGAACAGAGAGAAGGAAGTTCTGGAGGGAAAAATGTTCGAGTACAACATGGAAATAACTTTGAGAAGAACACCATCTATAAAGAGAACATACAAGTGAATAACGAAAGAAAAAATGAGGATAACATTCAGCACCAAAACAACTTTGGGAAGAATGTCCCTGTGCCTCGAGAAAGCAACTTTAAGGGGAATGTATTTGCACACCATCACAACAATGTGAAGGAGACGGTCCAAGTGCAACATCTGGATGAAAAAGTAAAATTTCAAGTTAACTATCGGAACAACTTTGAGTCCGGCATGAAACCTCAACAATGTGATCTTGAATCTTTAGGGAGGAGTGTTAAAAGCAATGCAGCAGCTGGTTCTGATAATTTGTATCATGTTAAGCCAAATTTTCAATCCTATTCCACAGACAAGAACGTCCTGATGCAGCATCCCAGTCAAGTAGCTTCTTCGATGTATTTGACATTGCCCACCGTGTTAACTAAGCCACGCGGTGAGAACTATATGCTCAGTACTTCATCAAGCAATTATATTGGAACACCATTTGACATAAACAAAGTTGGTATGAACTCTGGGAAGGTAAATCCAATGCACAAAGTAAATTGTGGAAAATTATCCGCCATGCAGCAGCTAGAAAGGGATGGAAGCTTTCCTCAAATAAGGTCGAGAAATGCGAATTGCCTTGATAAACAACGCATCCCAAGTTCAAGCACTGGAAATGGATTCCCAATTCCATTTCATCAGGGTAATGATATCGGTCTTAGCATTCCAAGCCAAGTAAGTTCCGAATACTTGCCCTGGGAAGAAAAGAACATAATGAGTTTAAAGATGGATGAAGGAGCTTCAAGCTTCTTCGGCGGAAGCTATAGTAAATCAGAAGACTATTTCGAGAACAATGTCTACGACATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

454

Amino Acids

51.02

Weight (kDa)

8.8

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02611 FvH4_5g02611 FvH4_5g02611
malus_domestica	MD06G1085200.v1.1
prunus_persica	Prupe.5G101200_v2.0.a1 Prupe.5G101200_v2.0.a1 Prupe.5G101200_v2.0.a1
pyrus_communis	pycom06g08130
rosa_chinensis	RchiOBHm_Chr7g0197481
rosa_laevigata	RLG00000003937
rosa_multiflora	Rmu_sc0002167.1_g000002 Rmu_sc0013361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00258430
rosa_rugosa	Rorug07G0040000
rosa_samantha	Rh7AG165100 Rh7BG167200 Rh7CG173600 Rh7DG166500
rosa_wichuraiana	Rw7G014390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	863
AccI	GTMKAC	1 cut(s)	1347
AccII	CGCG	1 cut(s)	939
AciI	CCGC	5 cut(s)	113, 440, 939, 1065, 1305
AcsI	RAATTY	3 cut(s)	382, 704, 835
AdeI	CACNNNGTG	1 cut(s)	941
AfaI	GTAC	2 cut(s)	489, 961
AfiI	CCNNNNNNNGG	1 cut(s)	14
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	8 cut(s)	84, 343, 449, 710, 767, 842, 1155, 1293
AjnI	CCWGG	1 cut(s)	1244
AluBI	AGCT	9 cut(s)	12, 188, 803, 893, 1078, 1095, 1289, 1296, 1311
AluI	AGCT	9 cut(s)	12, 188, 803, 893, 1078, 1095, 1289, 1296, 1311
Alw21I	GWGCWC	2 cut(s)	190, 258
Alw26I	GTCTC	1 cut(s)	662
Alw44I	GTGCAC	1 cut(s)	254
AlwNI	CAGNNNCTG	1 cut(s)	803
Ama87I	CYCGRG	1 cut(s)	612
ApaLI	GTGCAC	1 cut(s)	254
ApeKI	GCWGC	9 cut(s)	167, 314, 317, 434, 797, 800, 874, 1072, 1075
ApoI	RAATTY	3 cut(s)	382, 704, 835
AspS9I	GGNCC	1 cut(s)	673
AsuHPI	GGTGA	2 cut(s)	35, 953
AvaI	CYCGRG	1 cut(s)	612
AvaII	GGWCC	1 cut(s)	673
AxyI	CCTNAGG	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	190
BauI	CACGAG	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	1332
Bbv12I	GWGCWC	2 cut(s)	190, 258
BbvI	GCAGC	9 cut(s)	179, 301, 304, 421, 809, 812, 886, 1084, 1087
BccI	CCATC	5 cut(s)	13, 527, 657, 1082, 1270
BciT130I	CCWGG	1 cut(s)	1246
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	2 cut(s)	9, 1079
BfmI	CTRYAG	2 cut(s)	181, 1312
BlpI	GCTNAGC	1 cut(s)	189
BmcAI	AGTACT	1 cut(s)	961
Bme1390I	CCNGG	1 cut(s)	1246
Bme18I	GGWCC	1 cut(s)	673
BmeT110I	CYCGRG	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	673
BmrFI	CCNGG	1 cut(s)	1246
BmrI	ACTGGG	1 cut(s)	876
BmsI	GCATC	4 cut(s)	154, 861, 886, 1152
BmuI	ACTGGG	1 cut(s)	876
BpiI	GAAGAC	1 cut(s)	1332
BpmI	CTGGAG	1 cut(s)	489
Bpu1102I	GCTNAGC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	1244, 1245
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	6 cut(s)	138, 202, 301, 423, 882, 1165
Bse21I	CCTNAGG	1 cut(s)	260
Bse3DI	GCAATG	2 cut(s)	799, 911
BseBI	CCWGG	1 cut(s)	1246
BseDI	CCNNGG	2 cut(s)	1244, 1245
BseGI	GGATG	9 cut(s)	24, 331, 402, 430, 697, 877, 1093, 1143, 1285
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMI	GCAATG	2 cut(s)	799, 911
BseMII	CTCAG	2 cut(s)	203, 970
BseNI	ACTGG	6 cut(s)	138, 202, 301, 423, 882, 1165
BseRI	GAGGAG	1 cut(s)	793
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	9 cut(s)	179, 301, 304, 421, 809, 812, 886, 1084, 1087
Bsh1236I	CGCG	1 cut(s)	939
BsiHKAI	GWGCWC	2 cut(s)	190, 258
BsiHKCI	CYCGRG	1 cut(s)	612
BsiSI	CCGG	2 cut(s)	141, 738
BslFI	GGGAC	2 cut(s)	334, 587
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	662
BsmBI	CGTCTC	1 cut(s)	662
BsmFI	GGGAC	2 cut(s)	334, 587
BsmI	GAATGC	1 cut(s)	1212
BsoBI	CYCGRG	1 cut(s)	612
Bsp1286I	GDGCHC	2 cut(s)	190, 258
Bsp143I	GATC	2 cut(s)	223, 760
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	5 cut(s)	113, 440, 939, 1065, 1305
BspCNI	CTCAG	2 cut(s)	202, 969
BspFNI	CGCG	1 cut(s)	939
BspMAI	CTGCAG	1 cut(s)	185
BsrDI	GCAATG	2 cut(s)	799, 911
BsrI	ACTGG	6 cut(s)	138, 202, 301, 423, 882, 1165
BssECI	CCNNGG	2 cut(s)	1244, 1245
BssMI	GATC	2 cut(s)	223, 760
BssSI	CACGAG	1 cut(s)	119
Bst2BI	CACGAG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	1246
Bst4CI	ACNGT	2 cut(s)	673, 922
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstDEI	CTNAG	5 cut(s)	189, 260, 930, 956, 1208
BstF5I	GGATG	9 cut(s)	24, 331, 402, 430, 697, 877, 1093, 1143, 1285
BstFNI	CGCG	1 cut(s)	939
BstKTI	GATC	2 cut(s)	226, 763
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	2 cut(s)	223, 760
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 1218, 1302
BstNI	CCWGG	1 cut(s)	1246
BstNSI	RCATGY	2 cut(s)	205, 235
BstSCI	CCNGG	1 cut(s)	1244
BstSFI	CTRYAG	2 cut(s)	181, 1312
BstSLI	GKGCMC	1 cut(s)	258
BstUI	CGCG	1 cut(s)	939
BstV1I	GCAGC	9 cut(s)	179, 301, 304, 421, 809, 812, 886, 1084, 1087
BstV2I	GAAGAC	1 cut(s)	1332
Bsu36I	CCTNAGG	1 cut(s)	260
BtsCI	GGATG	9 cut(s)	24, 331, 402, 430, 697, 877, 1093, 1143, 1285
BtsIMutI	CAGTG	1 cut(s)	1158
CaiI	CAGNNNCTG	1 cut(s)	803
Cfr13I	GGNCC	1 cut(s)	673
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	488, 960
CviAII	CATG	8 cut(s)	202, 232, 393, 494, 742, 824, 1069, 1359
CviQI	GTAC	2 cut(s)	488, 960
DdeI	CTNAG	5 cut(s)	189, 260, 930, 956, 1208
DpnI	GATC	2 cut(s)	225, 762
DpnII	GATC	2 cut(s)	223, 760
DraI	TTTAAA	1 cut(s)	1272
DraIII	CACNNNGTG	1 cut(s)	941
DrdI	GACNNNNNNGTC	1 cut(s)	863
DseDI	GACNNNNNNGTC	1 cut(s)	863
EciI	GGCGGA	2 cut(s)	1054, 1320
Ecl136II	GAGCTC	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	1201
Eco47I	GGWCC	1 cut(s)	673
Eco53kI	GAGCTC	1 cut(s)	188
Eco81I	CCTNAGG	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	612
EcoICRI	GAGCTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	1244
EcoRV	GATATC	1 cut(s)	1201
EcoT38I	GRGCYC	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	662
FaeI	CATG	8 cut(s)	205, 235, 396, 497, 745, 827, 1072, 1362
FaqI	GGGAC	2 cut(s)	334, 587
FatI	CATG	8 cut(s)	201, 231, 392, 493, 741, 823, 1068, 1358
FauI	CCCGC	1 cut(s)	447
FblI	GTMKAC	1 cut(s)	1347
FokI	GGATG	9 cut(s)	31, 338, 409, 437, 704, 864, 1100, 1130, 1292
FriOI	GRGCYC	1 cut(s)	190
FspBI	CTAG	2 cut(s)	9, 1079
GsuI	CTGGAG	1 cut(s)	489
HapII	CCGG	2 cut(s)	141, 738
HgaI	GACGC	1 cut(s)	440
Hin1II	CATG	8 cut(s)	205, 235, 396, 497, 745, 827, 1072, 1362
HincII	GTYRAC	2 cut(s)	715, 927
HindII	GTYRAC	2 cut(s)	715, 927
HindIII	AAGCTT	2 cut(s)	1093, 1294
HinfI	GANTC	7 cut(s)	77, 92, 347, 361, 734, 767, 1170
HpaI	GTTAAC	2 cut(s)	715, 927
HpaII	CCGG	2 cut(s)	141, 738
HphI	GGTGA	2 cut(s)	35, 953
Hpy166II	GTNNAC	6 cut(s)	131, 256, 304, 715, 927, 1348
Hpy188I	TCNGA	4 cut(s)	723, 811, 1234, 1324
Hpy188III	TCNNGA	9 cut(s)	55, 119, 468, 614, 689, 764, 868, 1113, 1336
Hpy8I	GTNNAC	6 cut(s)	131, 256, 304, 715, 927, 1348
HpyAV	CCTTC	6 cut(s)	55, 397, 452, 658, 1018, 1277
HpyCH4III	ACNGT	2 cut(s)	673, 922
HpyCH4IV	ACGT	1 cut(s)	864
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 1218, 1302
HpyF3I	CTNAG	5 cut(s)	189, 260, 930, 956, 1208
HpySE526I	ACGT	1 cut(s)	864
Hsp92II	CATG	8 cut(s)	205, 235, 396, 497, 745, 827, 1072, 1362
KspAI	GTTAAC	2 cut(s)	715, 927
Kzo9I	GATC	2 cut(s)	223, 760
LmnI	GCTCC	1 cut(s)	1286
Lsp1109I	GCAGC	9 cut(s)	179, 301, 304, 421, 809, 812, 886, 1084, 1087
LweI	GCATC	4 cut(s)	154, 861, 886, 1152
MaeI	CTAG	2 cut(s)	9, 1079
MaeII	ACGT	1 cut(s)	864
MaeIII	GTNAC	2 cut(s)	86, 370
MalI	GATC	2 cut(s)	225, 762
MboI	GATC	2 cut(s)	223, 760
MhlI	GDGCHC	2 cut(s)	190, 258
MlyI	GAGTC	2 cut(s)	356, 743
MseI	TTAA	9 cut(s)	33, 333, 366, 627, 714, 786, 828, 926, 1271
MslI	CAYNNNNRTG	3 cut(s)	539, 657, 690
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	2 cut(s)	141, 738
MspR9I	CCNGG	1 cut(s)	1246
Mva1269I	GAATGC	1 cut(s)	1212
MvaI	CCWGG	1 cut(s)	1246
MvnI	CGCG	1 cut(s)	939
MwoI	GCNNNNNNNGC	3 cut(s)	164, 1218, 1302
NdeII	GATC	2 cut(s)	223, 760
NlaIII	CATG	8 cut(s)	205, 235, 396, 497, 745, 827, 1072, 1362
NmuCI	GTSAC	2 cut(s)	86, 370
NspI	RCATGY	2 cut(s)	205, 235
PaeR7I	CTCGAG	1 cut(s)	612
PasI	CCCWGGG	1 cut(s)	1245
PciI	ACATGT	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	1118
PctI	GAATGC	1 cut(s)	1212
PfeI	GAWTC	5 cut(s)	77, 92, 361, 767, 1170
PleI	GAGTC	2 cut(s)	355, 742
PpsI	GAGTC	2 cut(s)	355, 742
PscI	ACATGT	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	1244
PspGI	CCWGG	1 cut(s)	1244
PspPI	GGNCC	1 cut(s)	673
PsrI	GAACNNNNNNTAC	1 cut(s)	1331
PstI	CTGCAG	1 cut(s)	185
PstNI	CAGNNNCTG	1 cut(s)	803
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	2 cut(s)	489, 961
RsaNI	GTAC	2 cut(s)	488, 960
RseI	CAYNNNNRTG	3 cut(s)	539, 657, 690
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	9 cut(s)	33, 333, 366, 627, 714, 786, 828, 926, 1271
Sau3AI	GATC	2 cut(s)	223, 760
Sau96I	GGNCC	1 cut(s)	673
ScaI	AGTACT	1 cut(s)	961
SchI	GAGTC	2 cut(s)	356, 743
ScrFI	CCNGG	1 cut(s)	1246
SduI	GDGCHC	2 cut(s)	190, 258
SfaNI	GCATC	4 cut(s)	154, 861, 886, 1152
SfcI	CTRYAG	2 cut(s)	181, 1312
Sfr274I	CTCGAG	1 cut(s)	612
SinI	GGWCC	1 cut(s)	673
SlaI	CTCGAG	1 cut(s)	612
SmiMI	CAYNNNNRTG	3 cut(s)	539, 657, 690
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
SsiI	CCGC	5 cut(s)	113, 440, 939, 1065, 1305
SspMI	CTAG	2 cut(s)	9, 1079
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	1 cut(s)	1244
TaaI	ACNGT	2 cut(s)	673, 922
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	6 cut(s)	174, 484, 613, 899, 1112, 1335
TaqII	GACCGA	1 cut(s)	1193
TatI	WGTACW	2 cut(s)	487, 959
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	5 cut(s)	77, 92, 361, 767, 1170
Tru1I	TTAA	9 cut(s)	33, 333, 366, 627, 714, 786, 828, 926, 1271
Tru9I	TTAA	9 cut(s)	33, 333, 366, 627, 714, 786, 828, 926, 1271
TscAI	CASTG	1 cut(s)	1165
TseFI	GTSAC	2 cut(s)	86, 370
TseI	GCWGC	9 cut(s)	167, 314, 317, 434, 797, 800, 874, 1072, 1075
Tsp45I	GTSAC	2 cut(s)	86, 370
TspDTI	ATGAA	9 cut(s)	196, 342, 381, 708, 758, 954, 1028, 1175, 1296
TspRI	CASTG	1 cut(s)	1165
VneI	GTGCAC	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	673
XapI	RAATTY	3 cut(s)	382, 704, 835
XceI	RCATGY	2 cut(s)	205, 235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587
XhoI	CTCGAG	1 cut(s)	612
XmiI	GTMKAC	1 cut(s)	1347
XspI	CTAG	2 cut(s)	9, 1079
ZrmI	AGTACT	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.