Rroxscaffold_3G00258430

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
52795984 .. 52799379
3396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00258430.1

Sequence Viewer

Length: 1752 bp
ATGGGTGGTGACCTGAGGTGGGAGTTTAGGAGGAAGGACAATGGCGATGAGTCTTCAAGTGATGAATCTAAATCAAGTAGTGAGGCAGCTCACGAGAAGCATAAACTGGTTTCCTCTTTGATTTCGGTTGAAAATGATGAAGAAATTGGAACTCATGGAGTCAAGCAGAATGTCATGAGCAATCCTCATACTGAGGTTAAAATTATGTCTGGGAAAGGCAAAAATGGGCACTCACAAAGGAGTGGAAAGGAAAGTTCAATTCATGATGGCACAGAGAGGGATTCTCATGAAGAAGGCAGTAGAAAAAAGAGTAAAACCAGGGTTTATGAGCCTGCTGCCATGGATGAGATTAAGAGATTCATGGAGTCCTTATTAGAGGATCTTAAAGTGACAAGAGAAAATTTGTTTTCATGGATGAGGCAGGAAATGCAATTGGTGATGGATGATACTCTTCCACCTCTTGAACGGAGAGAACGAAGTTTTGGAGAGAAAAATCTGCTACTGCAACATGGAGAAATCGTTGAGAACACCACCTCTAAGGAGAATAGACAAGTGAACAAAAGAAAGTTTGAAGAGAATATTCAGATACGTCATCAAAATAACTATTCGAAAGATGTTCTGGTGCCGCATGAAACCAACTTTGAGGATAATGTATTTGCACGACATCATAACAACTTAAAGGAGACAATCCAAGTGCAGCATCAGAACAACTCCGAAGAGGCAGATGTTCAAGTGCAATCTCGATGCAACTTTGAATCTGGCATGAGAGCTCAAAAATGTAATATTGGATCTTTGGAGGGTACTGCTAGAAGCAATCAAGCAAGTGGTTATGATAATGGCTATCGAGTACTTGGAAAACAAGTTGATAATGGCCAAGCCACTAGAGCCTTGATACCAAGGGAAAAGTTTGGTTCATTTGTCAAGCCAAATTTTCAGTCCTGTTCCACAGAAATTAATGCCCAGAGGCAGCATCAGACAAACTATCTATTGGGCATAAGACCTCCAAATTACAATTGCAGATCTTTGGAGAGTCCTTTGAAAGGCAAAGAGAGATCTCAATCTAATAATTGCCATCCATGGATCGAACATCAAGTTGATTGTGTTCGAGATATTGGACCTGTTGCATCATCTGAAATAGAAAGAGGAGGGAGGTTGACAGTACCTATCGAGTCAAGTTTTTCTTCCAATGTTTCCAGTCAGGTAGCTTCTTCCATGTATTTGACATTACCCTCTGTGTTCACTAGCCCCTATGGTGAGGATCCTATCCTTGGCACTTCTTCATATAGTTATATTCAACCAACAGTTGCCGGAAACAGATTAGGCATGAACTATGAGAAAGCAAACACAATGCTCAAAGTAAATGCTCATTATGGAAACTTTACAGGCATGAGTCACCAAGTAAGAAATGGAAGCATTGCTCAAATAGGGTCCCAAAATGTGAGTTATAGTGATAGGCAAAGCATCCCTAGTTCAAGTATTGGAACTGGGTTCCCAATTGCACTTCATCAAGGTATGGATTTTGGTGTTAGCTTTCCAAGCCAAGCGAGTATCGAATATCTTCCTCGAGATGAAAAGAACACAAGGGGTTTGAGGATGAATGAAGGAGCCAAAATGTTCTCCGAAGGAAGCTATGCTGTACCCGAAGACTATGTTTCCAACAATTTTTTCAGTCGTTCTATTAGTAAACCTCAAGGTACACTTCAAGCATTTCAAAAAGAAAACCTTGAAAAGGGCAATAAGTTCCCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

583

Amino Acids

65.62

Weight (kDa)

6.85

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 622
AciI CCGC 1 cut(s) 626
AclWI GGATC 5 cut(s) 387, 796, 1088, 1253, 1266
AcoI YGGCCR 1 cut(s) 871
AcsI RAATTY 2 cut(s) 400, 928
AfaI GTAC 5 cut(s) 802, 849, 1161, 1638, 1696
AfiI CCNNNNNNNGG 4 cut(s) 19, 1040, 1268, 1729
AjnI CCWGG 1 cut(s) 317
AjuI GAANNNNNNNTTGG 4 cut(s) 465, 497, 1649, 1681
AluBI AGCT 5 cut(s) 89, 770, 1205, 1530, 1629
AluI AGCT 5 cut(s) 89, 770, 1205, 1530, 1629
Alw21I GWGCWC 1 cut(s) 772
Alw26I GTCTC 1 cut(s) 677
AlwI GGATC 5 cut(s) 387, 796, 1088, 1253, 1266
Ama87I CYCGRG 1 cut(s) 1563
AoxI GGCC 1 cut(s) 871
ApeKI GCWGC 4 cut(s) 86, 335, 697, 967
ApoI RAATTY 2 cut(s) 400, 928
ArsI GACNNNNNNTTYG 2 cut(s) 920, 952
AseI ATTAAT 1 cut(s) 954
Asp700I GAANNNNTTC 1 cut(s) 1557
AspS9I GGNCC 2 cut(s) 1115, 1428
AsuHPI GGTGA 4 cut(s) 20, 448, 1265, 1385
AsuII TTCGAA 1 cut(s) 608
AvaI CYCGRG 1 cut(s) 1563
AvaII GGWCC 2 cut(s) 1115, 1428
AxyI CCTNAGG 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 231
BalI TGGCCA 1 cut(s) 873
BamHI GGATCC 1 cut(s) 1258
BanI GGYRCC 1 cut(s) 622
BanII GRGCYC 1 cut(s) 772
BauI CACGAG 1 cut(s) 92
BbsI GAAGAC 2 cut(s) 45, 1650
Bbv12I GWGCWC 1 cut(s) 772
BbvI GCAGC 4 cut(s) 98, 322, 709, 979
BccI CCATC 3 cut(s) 260, 433, 1080
BciT130I CCWGG 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 677
BfaI CTAG 4 cut(s) 807, 882, 1242, 1467
BglII AGATCT 2 cut(s) 1019, 1052
BisI GCNGC 5 cut(s) 87, 336, 626, 698, 968
BlsI GCNGC 5 cut(s) 88, 337, 627, 699, 969
BmcAI AGTACT 1 cut(s) 849
Bme1390I CCNGG 1 cut(s) 319
Bme18I GGWCC 2 cut(s) 1115, 1428
BmeT110I CYCGRG 1 cut(s) 1563
BmgT120I GGNCC 2 cut(s) 1115, 1428
BmiI GGNNCC 6 cut(s) 624, 1260, 1429, 1430, 1490, 1606
BmrFI CCNGG 1 cut(s) 319
BmrI ACTGGG 1 cut(s) 1494
BmsI GCATC 5 cut(s) 709, 734, 979, 1133, 1470
BmuI ACTGGG 1 cut(s) 1494
BpiI GAAGAC 2 cut(s) 45, 1650
BplI GAGNNNNNCTC 4 cut(s) 169, 201, 268, 300
Bpu14I TTCGAA 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 1674
BsaBI GATNNNNATC 1 cut(s) 1057
BsaJI CCNNGG 5 cut(s) 318, 339, 896, 1076, 1267
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 1040, 1268, 1729
Bse1I ACTGG 3 cut(s) 111, 1194, 1489
Bse21I CCTNAGG 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 1413
Bse8I GATNNNNATC 1 cut(s) 1057
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 5 cut(s) 318, 339, 896, 1076, 1267
BseGI GGATG 6 cut(s) 349, 420, 448, 1072, 1461, 1599
BseJI GATNNNNATC 1 cut(s) 1057
BseLI CCNNNNNNNGG 4 cut(s) 19, 1040, 1268, 1729
BseMI GCAATG 1 cut(s) 1413
BseMII CTCAG 2 cut(s) 5, 183
BseNI ACTGG 3 cut(s) 111, 1194, 1489
BseRI GAGGAG 1 cut(s) 1158
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 4 cut(s) 98, 322, 709, 979
BsgI GTGCAG 1 cut(s) 716
BshFI GGCC 1 cut(s) 873
BshNI GGYRCC 1 cut(s) 622
BsiHKAI GWGCWC 1 cut(s) 772
BsiHKCI CYCGRG 1 cut(s) 1563
BsiSI CCGG 1 cut(s) 1308
BslFI GGGAC 1 cut(s) 1414
BslI CCNNNNNNNGG 4 cut(s) 19, 1040, 1268, 1729
BsmAI GTCTC 1 cut(s) 677
BsmFI GGGAC 1 cut(s) 1414
BsnI GGCC 1 cut(s) 873
BsoBI CYCGRG 1 cut(s) 1563
Bsp119I TTCGAA 1 cut(s) 608
Bsp1286I GDGCHC 2 cut(s) 231, 772
Bsp143I GATC 6 cut(s) 379, 788, 1019, 1052, 1080, 1258
Bsp19I CCATGG 2 cut(s) 339, 1076
BspACI CCGC 1 cut(s) 626
BspANI GGCC 1 cut(s) 873
BspCNI CTCAG 2 cut(s) 6, 184
BspHI TCATGA 3 cut(s) 174, 262, 286
BspLI GGNNCC 6 cut(s) 624, 1260, 1429, 1430, 1490, 1606
BspPI GGATC 5 cut(s) 387, 796, 1088, 1253, 1266
BspT104I TTCGAA 1 cut(s) 608
BspT107I GGYRCC 1 cut(s) 622
BsrDI GCAATG 1 cut(s) 1413
BsrI ACTGG 3 cut(s) 111, 1194, 1489
BssECI CCNNGG 5 cut(s) 318, 339, 896, 1076, 1267
BssMI GATC 6 cut(s) 379, 788, 1019, 1052, 1080, 1258
BssSI CACGAG 1 cut(s) 92
BssT1I CCWWGG 4 cut(s) 339, 896, 1076, 1267
Bst2BI CACGAG 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 2 cut(s) 1159, 1303
Bst6I CTCTTC 3 cut(s) 456, 567, 711
BstAPI GCANNNNNTGC 1 cut(s) 427
BstBI TTCGAA 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 14, 192, 537
BstDSI CCRYGG 2 cut(s) 339, 1076
BstEII GGTNACC 1 cut(s) 8
BstENI CCTNNNNNAGG 2 cut(s) 1038, 1727
BstF5I GGATG 6 cut(s) 349, 420, 448, 1072, 1461, 1599
BstKTI GATC 6 cut(s) 382, 791, 1022, 1055, 1083, 1261
BstMAI GTCTC 1 cut(s) 677
BstMBI GATC 6 cut(s) 379, 788, 1019, 1052, 1080, 1258
BstMWI GCNNNNNNNGC 3 cut(s) 427, 884, 1536
BstNI CCWGG 1 cut(s) 319
BstPI GGTNACC 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 317
BstSLI GKGCMC 1 cut(s) 231
BstV1I GCAGC 4 cut(s) 98, 322, 709, 979
BstV2I GAAGAC 2 cut(s) 45, 1650
BstX2I RGATCY 5 cut(s) 379, 788, 1019, 1052, 1258
BstYI RGATCY 5 cut(s) 379, 788, 1019, 1052, 1258
Bsu36I CCTNAGG 1 cut(s) 14
BsuRI GGCC 1 cut(s) 873
BtgI CCRYGG 2 cut(s) 339, 1076
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 6 cut(s) 349, 420, 448, 1072, 1461, 1599
Cac8I GCNNGC 1 cut(s) 333
CciI TCATGA 3 cut(s) 174, 262, 286
Cfr13I GGNCC 2 cut(s) 1115, 1428
Csp6I GTAC 5 cut(s) 801, 848, 1160, 1637, 1695
CviQI GTAC 5 cut(s) 801, 848, 1160, 1637, 1695
DdeI CTNAG 3 cut(s) 14, 192, 537
DpnI GATC 6 cut(s) 381, 790, 1021, 1054, 1082, 1260
DpnII GATC 6 cut(s) 379, 788, 1019, 1052, 1080, 1258
EaeI YGGCCR 1 cut(s) 871
Eam1104I CTCTTC 3 cut(s) 456, 567, 711
EarI CTCTTC 3 cut(s) 456, 567, 711
Ecl136II GAGCTC 1 cut(s) 770
Eco130I CCWWGG 4 cut(s) 339, 896, 1076, 1267
Eco24I GRGCYC 1 cut(s) 772
Eco47I GGWCC 2 cut(s) 1115, 1428
Eco53kI GAGCTC 1 cut(s) 770
Eco81I CCTNAGG 1 cut(s) 14
Eco88I CYCGRG 1 cut(s) 1563
Eco91I GGTNACC 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 770
EcoNI CCTNNNNNAGG 2 cut(s) 1038, 1727
EcoO109I RGGNCCY 1 cut(s) 1428
EcoO65I GGTNACC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 317
EcoT14I CCWWGG 4 cut(s) 339, 896, 1076, 1267
EcoT38I GRGCYC 1 cut(s) 772
ErhI CCWWGG 4 cut(s) 339, 896, 1076, 1267
FalI AAGNNNNNCTT 6 cut(s) 1165, 1197, 1683, 1715, 1707, 1739
FaqI GGGAC 1 cut(s) 1414
Fnu4HI GCNGC 5 cut(s) 87, 336, 626, 698, 968
FokI GGATG 6 cut(s) 356, 427, 455, 1059, 1448, 1606
FriOI GRGCYC 1 cut(s) 772
Fsp4HI GCNGC 5 cut(s) 87, 336, 626, 698, 968
FspBI CTAG 4 cut(s) 807, 882, 1242, 1467
GluI GCNGC 5 cut(s) 87, 336, 626, 698, 968
HaeIII GGCC 1 cut(s) 873
HapII CCGG 1 cut(s) 1308
HincII GTYRAC 1 cut(s) 1155
HindII GTYRAC 1 cut(s) 1155
HpaII CCGG 1 cut(s) 1308
HphI GGTGA 4 cut(s) 20, 448, 1265, 1385
Hpy166II GTNNAC 5 cut(s) 556, 1155, 1239, 1685, 1697
Hpy188I TCNGA 6 cut(s) 585, 705, 715, 975, 1132, 1621
Hpy188III TCNNGA 8 cut(s) 92, 175, 263, 287, 461, 741, 1106, 1565
Hpy8I GTNNAC 5 cut(s) 556, 1155, 1239, 1685, 1697
HpyAV CCTTC 4 cut(s) 28, 287, 1595, 1616
HpyCH4III ACNGT 2 cut(s) 1159, 1303
HpyCH4IV ACGT 1 cut(s) 589
HpyCH4V TGCA 9 cut(s) 430, 505, 659, 697, 736, 747, 1017, 1124, 1499
HpyF10VI GCNNNNNNNGC 3 cut(s) 427, 884, 1536
HpyF3I CTNAG 3 cut(s) 14, 192, 537
HpySE526I ACGT 1 cut(s) 589
KflI GGGWCCC 1 cut(s) 1428
Kzo9I GATC 6 cut(s) 379, 788, 1019, 1052, 1080, 1258
LmnI GCTCC 1 cut(s) 1604
Lsp1109I GCAGC 4 cut(s) 98, 322, 709, 979
LweI GCATC 5 cut(s) 709, 734, 979, 1133, 1470
MaeI CTAG 4 cut(s) 807, 882, 1242, 1467
MaeII ACGT 1 cut(s) 589
MaeIII GTNAC 3 cut(s) 8, 388, 1391
MalI GATC 6 cut(s) 381, 790, 1021, 1054, 1082, 1260
MboI GATC 6 cut(s) 379, 788, 1019, 1052, 1080, 1258
MfeI CAATTG 3 cut(s) 431, 1012, 1494
MflI RGATCY 5 cut(s) 379, 788, 1019, 1052, 1258
MhlI GDGCHC 2 cut(s) 231, 772
MlsI TGGCCA 1 cut(s) 873
MluNI TGGCCA 1 cut(s) 873
MlyI GAGTC 6 cut(s) 59, 168, 374, 1039, 1178, 1399
MmeI TCCRAC 1 cut(s) 1680
Mox20I TGGCCA 1 cut(s) 873
MroXI GAANNNNTTC 1 cut(s) 1557
MscI TGGCCA 1 cut(s) 873
MseI TTAA 5 cut(s) 198, 351, 384, 677, 954
Msp20I TGGCCA 1 cut(s) 873
MspI CCGG 1 cut(s) 1308
MspR9I CCNGG 1 cut(s) 319
MunI CAATTG 3 cut(s) 431, 1012, 1494
MvaI CCWGG 1 cut(s) 319
MwoI GCNNNNNNNGC 3 cut(s) 427, 884, 1536
NcoI CCATGG 2 cut(s) 339, 1076
NdeII GATC 6 cut(s) 379, 788, 1019, 1052, 1080, 1258
NlaIV GGNNCC 6 cut(s) 624, 1260, 1429, 1430, 1490, 1606
NmuCI GTSAC 3 cut(s) 8, 388, 1391
NspV TTCGAA 1 cut(s) 608
PaeR7I CTCGAG 1 cut(s) 1563
PagI TCATGA 3 cut(s) 174, 262, 286
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 1557
PfeI GAWTC 4 cut(s) 65, 281, 357, 755
PkrI GCNGC 5 cut(s) 88, 337, 627, 699, 969
PleI GAGTC 6 cut(s) 58, 167, 373, 1038, 1177, 1398
PpsI GAGTC 6 cut(s) 58, 167, 373, 1038, 1177, 1398
PpuMI RGGWCCY 1 cut(s) 1428
PshBI ATTAAT 1 cut(s) 954
Psp124BI GAGCTC 1 cut(s) 772
Psp5II RGGWCCY 1 cut(s) 1428
Psp6I CCWGG 1 cut(s) 317
PspEI GGTNACC 1 cut(s) 8
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 6 cut(s) 624, 1260, 1429, 1430, 1490, 1606
PspPI GGNCC 2 cut(s) 1115, 1428
PspPPI RGGWCCY 1 cut(s) 1428
PsuI RGATCY 5 cut(s) 379, 788, 1019, 1052, 1258
RsaI GTAC 5 cut(s) 802, 849, 1161, 1638, 1696
RsaNI GTAC 5 cut(s) 801, 848, 1160, 1637, 1695
SacI GAGCTC 1 cut(s) 772
SaqAI TTAA 5 cut(s) 198, 351, 384, 677, 954
SatI GCNGC 5 cut(s) 87, 336, 626, 698, 968
Sau3AI GATC 6 cut(s) 379, 788, 1019, 1052, 1080, 1258
Sau96I GGNCC 2 cut(s) 1115, 1428
ScaI AGTACT 1 cut(s) 849
SchI GAGTC 6 cut(s) 59, 168, 374, 1039, 1178, 1399
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 2 cut(s) 231, 772
SfaNI GCATC 5 cut(s) 709, 734, 979, 1133, 1470
Sfr274I CTCGAG 1 cut(s) 1563
SfuI TTCGAA 1 cut(s) 608
SinI GGWCC 2 cut(s) 1115, 1428
SlaI CTCGAG 1 cut(s) 1563
SmlI CTYRAG 2 cut(s) 1563, 1689
SmoI CTYRAG 2 cut(s) 1563, 1689
SsiI CCGC 1 cut(s) 626
SspI AATATT 2 cut(s) 580, 784
SspMI CTAG 4 cut(s) 807, 882, 1242, 1467
SstI GAGCTC 1 cut(s) 772
StyD4I CCNGG 1 cut(s) 317
StyI CCWWGG 4 cut(s) 339, 896, 1076, 1267
TaaI ACNGT 2 cut(s) 1159, 1303
TaiI ACGT 1 cut(s) 592
TaqI TCGA 8 cut(s) 608, 742, 844, 1083, 1105, 1167, 1551, 1564
TatI WGTACW 1 cut(s) 847
TauI GCSGC 1 cut(s) 628
TfiI GAWTC 4 cut(s) 65, 281, 357, 755
Tru1I TTAA 5 cut(s) 198, 351, 384, 677, 954
Tru9I TTAA 5 cut(s) 198, 351, 384, 677, 954
TseFI GTSAC 3 cut(s) 8, 388, 1391
TseI GCWGC 4 cut(s) 86, 335, 697, 967
Tsp45I GTSAC 3 cut(s) 8, 388, 1391
TspGWI ACGGA 1 cut(s) 481
VpaK11BI GGWCC 2 cut(s) 1115, 1428
VspI ATTAAT 1 cut(s) 954
XagI CCTNNNNNAGG 2 cut(s) 1038, 1727
XapI RAATTY 2 cut(s) 400, 928
XcmI CCANNNNNNNNNTGG 1 cut(s) 1403
XhoI CTCGAG 1 cut(s) 1563
XmnI GAANNNNTTC 1 cut(s) 1557
XspI CTAG 4 cut(s) 807, 882, 1242, 1467
ZrmI AGTACT 1 cut(s) 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.