Prupe.5G101200_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
10898044 .. 10901989
3946 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G101200.2

Sequence Viewer

Length: 1713 bp
ATGTCACCCAGCTCCAAAATGGGTGATGGGTTGAAGCAGCAGAGGTGGGAGTTTAGGAGGAGGGACAGTGACATGGATTCTTCAAGTGATGAGTCTAAATCAAGTAGTGAGGCGGCTCACAAGAAGCATAACCTGGTTTGCAGTTTGATTCCACTTGAAAATGATGAAGCAATTGGTAACTGCAGAGTCCAGCAGACTGGCATGTTCAATCCTATGGATGATCAGATCATGTTTCAGAAAGGCAAAAGGGTGCATCTTAGGAGGAGGAAAAAGGATAATTGGATTAATAATGACATGGAGAGGGATTCCCGTAAAGAAGTTAGTAGAAAAAAGAGTAGAACTAGTGTTTACGATCCTGCTGCTTTGGATGAACTTAAAATCTTCATGGAGTCCTTATTGGAGGATCTTAAAGTGACAAGAGAAAATTTGTTTTCATGGATGAGGAAGGAAATGCAAGAATTGATGGCTGATGATGATGCTGCTCCACGTCTTGAGCGAAGAAAAGGAAGTTCTGGAGGGAAAAATGTCCGAGTACGGAATGGTGACAACTTTGTGGAAAACACCATCTCTAAGGAGCACATACAGGTTCTTAATAAAAGAAAACTTGAGGAAAACATTATAATTCAGCATCAAAACAACTTTGACGAAAATGTCCTGGTGCAACGTGAAAGCAACTATGAGCAGAATGCATGTCCGGATCATCATAACAAATTTAAGGAGACCTTCCAAGTGCAGCATCAGGGCAACTTTGAAAAAGTAAATGTTCAAGTGAACTATCGAAATAACTCAGACCTTGGCATGGAAGCTCAAAAATGTGATATGGGATCAATAGAGAGGAGTGTTAAAAGCAATACAGCAGCGGGTCATGATAATTGCTATCCTCTTAAGCCAAATTTTCAATCTGCAGACAAGAATGTGTGGATGCAGCATGAAAAGAACTATCTATTAGGCACAAGAGCTCAAGCTTACAGTGGTAGATCTTTAGAGAGCCCTTTAATAGGCAGAAAGATGGCTCAATCTAATTATTTCTATCCAGTAATTGAACATCGAGTTGATCGTGTTCAAGAAATTGGAGCCGAAACATCATCTGAAAAGGATAGAGGTGAGAGGTTGGGATTACCTATTGAGTCCACTTTTTCTTCCAATCTTTCCAGTCAGGTAGCTTCTTCAATGTATTTGTCATTACCCACTGTGTTAACTGAGCCCTGTGGTGAGAACCATATGCTTAGTGCTTCTTCAAGCAATTATATTCGAACACCATGTGATAGAAACAAACTAGATGTGAACTATGGGAAGGAAAATCCAATGCTCAAAGTAAATGGTCATCATGGAAAATCATCAGGCATGCAGCAAGAAGAAAGAAATGGAAGCTTTGCTCAACTGGGGTCCCGAAATATGAGTTGTTTCGATAAACACTGCATCCCAAGTTCAAGCATTGGAACAGGATTCCCAGTTCCACTTCATCAGCGTACGGACATTGGTGTTAGCATTCCAAGCCAAGTAGGTTTGCAATACCTACCCCAGGAAGAAACGAACATAATGGGTTTAAGGATGGACGATGGAGCCTCAACGTTCTCTGGTGGAAGCTATGCTGCTATATCAGAAGGCTATCTTGCAAACACTTTTTACAGAAATTCCATTAGTAAAGCTCATGACAGACTCAAGGCATTTCAAAATCAAGACCTTGAAGAGGGCCTTTTATTCCCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

571

Amino Acids

64.84

Weight (kDa)

7.27

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 620
AasI GACNNNNNNGTC 1 cut(s) 650
AccIII TCCGGA 1 cut(s) 694
AciI CCGC 2 cut(s) 113, 860
AclI AACGTT 1 cut(s) 1571
AclWI GGATC 4 cut(s) 347, 411, 705, 832
AcsI RAATTY 4 cut(s) 424, 710, 892, 1633
AdeI CACNNNGTG 1 cut(s) 1262
AfaI GTAC 2 cut(s) 534, 1471
AfiI CCNNNNNNNGG 4 cut(s) 799, 998, 1522, 1690
AflII CTTAAG 1 cut(s) 884
AhlI ACTAGT 1 cut(s) 341
AjiI CACGTC 1 cut(s) 488
AjnI CCWGG 3 cut(s) 132, 654, 1521
AloI GAACNNNNNNTCC 2 cut(s) 1437, 1469
AluBI AGCT 8 cut(s) 12, 806, 959, 965, 1163, 1371, 1587, 1649
AluI AGCT 8 cut(s) 12, 806, 959, 965, 1163, 1371, 1587, 1649
Alw21I GWGCWC 2 cut(s) 579, 961
Alw26I GTCTC 1 cut(s) 713
AlwI GGATC 4 cut(s) 347, 411, 705, 832
Aor13HI TCCGGA 1 cut(s) 694
AoxI GGCC 1 cut(s) 1693
ApeKI GCWGC 8 cut(s) 37, 359, 479, 733, 857, 925, 1348, 1592
ApoI RAATTY 4 cut(s) 424, 710, 892, 1633
AseI ATTAAT 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 1386, 1693
AsuHPI GGTGA 4 cut(s) 35, 554, 1115, 1223
AsuII TTCGAA 1 cut(s) 1252
AvaII GGWCC 1 cut(s) 1386
BanII GRGCYC 3 cut(s) 961, 992, 1206
Bbv12I GWGCWC 2 cut(s) 579, 961
BbvI GCAGC 8 cut(s) 49, 346, 466, 745, 869, 937, 1360, 1579
BccI CCATC 6 cut(s) 20, 457, 572, 1003, 1546, 1553
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BciT130I CCWGG 3 cut(s) 134, 656, 1523
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 713
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 2 cut(s) 342, 1277
BfmI CTRYAG 2 cut(s) 181, 903
BfrI CTTAAG 1 cut(s) 884
BglII AGATCT 1 cut(s) 977
BisI GCNGC 9 cut(s) 38, 114, 360, 480, 734, 858, 926, 1349, 1593
BlsI GCNGC 9 cut(s) 39, 115, 361, 481, 735, 859, 927, 1350, 1594
Bme1390I CCNGG 3 cut(s) 134, 656, 1523
Bme18I GGWCC 1 cut(s) 1386
BmgBI CACGTC 1 cut(s) 488
BmgT120I GGNCC 2 cut(s) 1386, 1693
BmiI GGNNCC 4 cut(s) 1075, 1387, 1388, 1564
BmrFI CCNGG 3 cut(s) 134, 656, 1523
BmrI ACTGGG 2 cut(s) 1391, 1445
BmsI GCATC 6 cut(s) 262, 466, 637, 745, 912, 1428
BmuI ACTGGG 2 cut(s) 1391, 1445
BpmI CTGGAG 1 cut(s) 534
Bpu14I TTCGAA 1 cut(s) 1252
BpuEI CTTGAG 4 cut(s) 512, 626, 945, 1646
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 2 cut(s) 793, 1521
BsaWI WCCGGW 1 cut(s) 694
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bsc4I CCNNNNNNNGG 4 cut(s) 799, 998, 1522, 1690
Bse1I ACTGG 5 cut(s) 202, 1034, 1152, 1386, 1451
BseAI TCCGGA 1 cut(s) 694
BseBI CCWGG 3 cut(s) 134, 656, 1523
BseDI CCNNGG 2 cut(s) 793, 1521
BseGI GGATG 6 cut(s) 223, 373, 444, 927, 1419, 1557
BseLI CCNNNNNNNGG 4 cut(s) 799, 998, 1522, 1690
BseMII CTCAG 2 cut(s) 801, 1191
BseNI ACTGG 5 cut(s) 202, 1034, 1152, 1386, 1451
BseRI GAGGAG 3 cut(s) 73, 277, 850
BseXI GCAGC 8 cut(s) 49, 346, 466, 745, 869, 937, 1360, 1579
BseYI CCCAGC 1 cut(s) 8
BsgI GTGCAG 1 cut(s) 752
BshFI GGCC 1 cut(s) 1695
BsiHKAI GWGCWC 2 cut(s) 579, 961
BsiSI CCGG 1 cut(s) 695
BsiWI CGTACG 1 cut(s) 1469
BslFI GGGAC 2 cut(s) 77, 1372
BslI CCNNNNNNNGG 4 cut(s) 799, 998, 1522, 1690
BsmAI GTCTC 1 cut(s) 713
BsmFI GGGAC 2 cut(s) 77, 1372
BsmI GAATGC 2 cut(s) 691, 1488
BsnI GGCC 1 cut(s) 1695
Bso31I GGTCTC 1 cut(s) 713
Bsp119I TTCGAA 1 cut(s) 1252
Bsp1286I GDGCHC 4 cut(s) 579, 961, 992, 1206
Bsp13I TCCGGA 1 cut(s) 694
Bsp143I GATC 8 cut(s) 220, 225, 352, 403, 697, 824, 977, 1054
BspACI CCGC 2 cut(s) 113, 860
BspANI GGCC 1 cut(s) 1695
BspCNI CTCAG 2 cut(s) 800, 1192
BspEI TCCGGA 1 cut(s) 694
BspHI TCATGA 2 cut(s) 865, 1651
BspLI GGNNCC 4 cut(s) 1075, 1387, 1388, 1564
BspMAI CTGCAG 2 cut(s) 185, 907
BspPI GGATC 4 cut(s) 347, 411, 705, 832
BspT104I TTCGAA 1 cut(s) 1252
BspTI CTTAAG 1 cut(s) 884
BspTNI GGTCTC 1 cut(s) 713
BsrI ACTGG 5 cut(s) 202, 1034, 1152, 1386, 1451
BssECI CCNNGG 2 cut(s) 793, 1521
BssMI GATC 8 cut(s) 220, 225, 352, 403, 697, 824, 977, 1054
BssT1I CCWWGG 1 cut(s) 793
Bst2UI CCWGG 3 cut(s) 134, 656, 1523
Bst4CI ACNGT 3 cut(s) 68, 971, 1192
Bst6I CTCTTC 1 cut(s) 1683
BstAFI CTTAAG 1 cut(s) 884
BstBI TTCGAA 1 cut(s) 1252
BstC8I GCNNGC 1 cut(s) 1346
BstDEI CTNAG 5 cut(s) 257, 570, 787, 1200, 1226
BstENI CCTNNNNNAGG 3 cut(s) 996, 1520, 1688
BstF5I GGATG 6 cut(s) 223, 373, 444, 927, 1419, 1557
BstKTI GATC 8 cut(s) 223, 228, 355, 406, 700, 827, 980, 1057
BstMAI GTCTC 1 cut(s) 713
BstMBI GATC 8 cut(s) 220, 225, 352, 403, 697, 824, 977, 1054
BstMWI GCNNNNNNNGC 1 cut(s) 1494
BstNI CCWGG 3 cut(s) 134, 656, 1523
BstNSI RCATGY 3 cut(s) 205, 693, 1348
BstSCI CCNGG 3 cut(s) 132, 654, 1521
BstSFI CTRYAG 2 cut(s) 181, 903
BstV1I GCAGC 8 cut(s) 49, 346, 466, 745, 869, 937, 1360, 1579
BstX2I RGATCY 2 cut(s) 403, 977
BstXI CCANNNNNNTGG 1 cut(s) 197
BstYI RGATCY 2 cut(s) 403, 977
BsuRI GGCC 1 cut(s) 1695
BtrI CACGTC 1 cut(s) 488
BtsCI GGATG 6 cut(s) 223, 373, 444, 927, 1419, 1557
BtsI GCAGTG 1 cut(s) 1414
BtsIMutI CAGTG 4 cut(s) 73, 976, 1188, 1414
Cac8I GCNNGC 1 cut(s) 1346
CciI TCATGA 2 cut(s) 865, 1651
Cfr13I GGNCC 2 cut(s) 1386, 1693
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 2 cut(s) 533, 1470
CviQI GTAC 2 cut(s) 533, 1470
DdeI CTNAG 5 cut(s) 257, 570, 787, 1200, 1226
DpnI GATC 8 cut(s) 222, 227, 354, 405, 699, 826, 979, 1056
DpnII GATC 8 cut(s) 220, 225, 352, 403, 697, 824, 977, 1054
DraIII CACNNNGTG 1 cut(s) 1262
DrdI GACNNNNNNGTC 1 cut(s) 650
DseDI GACNNNNNNGTC 1 cut(s) 650
Eam1104I CTCTTC 1 cut(s) 1683
EarI CTCTTC 1 cut(s) 1683
Ecl136II GAGCTC 1 cut(s) 959
Eco130I CCWWGG 1 cut(s) 793
Eco24I GRGCYC 3 cut(s) 961, 992, 1206
Eco31I GGTCTC 1 cut(s) 713
Eco47I GGWCC 1 cut(s) 1386
Eco53kI GAGCTC 1 cut(s) 959
EcoICRI GAGCTC 1 cut(s) 959
EcoNI CCTNNNNNAGG 3 cut(s) 996, 1520, 1688
EcoO109I RGGNCCY 2 cut(s) 1386, 1693
EcoRII CCWGG 3 cut(s) 132, 654, 1521
EcoT14I CCWWGG 1 cut(s) 793
EcoT22I ATGCAT 1 cut(s) 691
EcoT38I GRGCYC 3 cut(s) 961, 992, 1206
ErhI CCWWGG 1 cut(s) 793
FalI AAGNNNNNCTT 6 cut(s) 707, 739, 1596, 1628, 1680, 1712
FaqI GGGAC 2 cut(s) 77, 1372
FauI CCCGC 1 cut(s) 853
FauNDI CATATG 1 cut(s) 1221
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 9 cut(s) 38, 114, 360, 480, 734, 858, 926, 1349, 1593
FokI GGATG 6 cut(s) 230, 380, 451, 934, 1406, 1564
FriOI GRGCYC 3 cut(s) 961, 992, 1206
Fsp4HI GCNGC 9 cut(s) 38, 114, 360, 480, 734, 858, 926, 1349, 1593
FspBI CTAG 2 cut(s) 342, 1277
GluI GCNGC 9 cut(s) 38, 114, 360, 480, 734, 858, 926, 1349, 1593
GsaI CCCAGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 1 cut(s) 1695
HapII CCGG 1 cut(s) 695
HincII GTYRAC 1 cut(s) 1197
HindII GTYRAC 1 cut(s) 1197
HindIII AAGCTT 2 cut(s) 963, 1369
HinfI GANTC 9 cut(s) 77, 92, 148, 186, 305, 389, 1127, 1446, 1659
HpaI GTTAAC 1 cut(s) 1197
HpaII CCGG 1 cut(s) 695
HphI GGTGA 4 cut(s) 35, 554, 1115, 1223
Hpy166II GTNNAC 5 cut(s) 349, 772, 1131, 1197, 1285
Hpy188I TCNGA 6 cut(s) 225, 237, 530, 790, 1090, 1603
Hpy188III TCNNGA 8 cut(s) 491, 513, 695, 866, 1064, 1389, 1652, 1679
Hpy8I GTNNAC 5 cut(s) 349, 772, 1131, 1197, 1285
HpyAV CCTTC 4 cut(s) 439, 733, 1288, 1598
HpyCH4III ACNGT 3 cut(s) 68, 971, 1192
HpyCH4IV ACGT 3 cut(s) 487, 664, 1571
HpyF10VI GCNNNNNNNGC 1 cut(s) 1494
HpyF3I CTNAG 5 cut(s) 257, 570, 787, 1200, 1226
HpySE526I ACGT 3 cut(s) 487, 664, 1571
KflI GGGWCCC 1 cut(s) 1386
Kpn2I TCCGGA 1 cut(s) 694
Ksp22I TGATCA 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 1197
Kzo9I GATC 8 cut(s) 220, 225, 352, 403, 697, 824, 977, 1054
LmnI GCTCC 5 cut(s) 17, 487, 574, 1073, 1562
Lsp1109I GCAGC 8 cut(s) 49, 346, 466, 745, 869, 937, 1360, 1579
LweI GCATC 6 cut(s) 262, 466, 637, 745, 912, 1428
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 2 cut(s) 342, 1277
MaeII ACGT 3 cut(s) 487, 664, 1571
MaeIII GTNAC 5 cut(s) 3, 68, 176, 412, 542
MalI GATC 8 cut(s) 222, 227, 354, 405, 699, 826, 979, 1056
MboI GATC 8 cut(s) 220, 225, 352, 403, 697, 824, 977, 1054
MboII GAAGA 9 cut(s) 72, 373, 510, 1131, 1158, 1227, 1367, 1538, 1700
MfeI CAATTG 1 cut(s) 171
MflI RGATCY 2 cut(s) 403, 977
MhlI GDGCHC 4 cut(s) 579, 961, 992, 1206
MlyI GAGTC 5 cut(s) 101, 195, 398, 1136, 1653
Mph1103I ATGCAT 1 cut(s) 691
MroI TCCGGA 1 cut(s) 694
MspA1I CMGCKG 1 cut(s) 860
MspCI CTTAAG 1 cut(s) 884
MspI CCGG 1 cut(s) 695
MspR9I CCNGG 3 cut(s) 134, 656, 1523
MunI CAATTG 1 cut(s) 171
Mva1269I GAATGC 2 cut(s) 691, 1488
MvaI CCWGG 3 cut(s) 134, 656, 1523
MwoI GCNNNNNNNGC 1 cut(s) 1494
NdeI CATATG 1 cut(s) 1221
NdeII GATC 8 cut(s) 220, 225, 352, 403, 697, 824, 977, 1054
NlaIV GGNNCC 4 cut(s) 1075, 1387, 1388, 1564
NmuCI GTSAC 4 cut(s) 3, 68, 412, 542
NsiI ATGCAT 1 cut(s) 691
NspI RCATGY 3 cut(s) 205, 693, 1348
NspV TTCGAA 1 cut(s) 1252
PaeI GCATGC 1 cut(s) 1348
PagI TCATGA 2 cut(s) 865, 1651
PcsI WCGNNNNNNNCGW 2 cut(s) 493, 1054
PctI GAATGC 2 cut(s) 691, 1488
PfeI GAWTC 4 cut(s) 77, 148, 305, 1446
Pfl23II CGTACG 1 cut(s) 1469
PkrI GCNGC 9 cut(s) 39, 115, 361, 481, 735, 859, 927, 1350, 1594
PleI GAGTC 5 cut(s) 100, 194, 397, 1135, 1653
PpsI GAGTC 5 cut(s) 100, 194, 397, 1135, 1653
PpuMI RGGWCCY 1 cut(s) 1386
PshBI ATTAAT 1 cut(s) 285
PsiI TTATAA 1 cut(s) 620
Psp124BI GAGCTC 1 cut(s) 961
Psp1406I AACGTT 1 cut(s) 1571
Psp5II RGGWCCY 1 cut(s) 1386
Psp6I CCWGG 3 cut(s) 132, 654, 1521
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 3 cut(s) 132, 654, 1521
PspLI CGTACG 1 cut(s) 1469
PspN4I GGNNCC 4 cut(s) 1075, 1387, 1388, 1564
PspPI GGNCC 2 cut(s) 1386, 1693
PspPPI RGGWCCY 1 cut(s) 1386
PstI CTGCAG 2 cut(s) 185, 907
PsuI RGATCY 2 cut(s) 403, 977
RsaI GTAC 2 cut(s) 534, 1471
RsaNI GTAC 2 cut(s) 533, 1470
SacI GAGCTC 1 cut(s) 961
SatI GCNGC 9 cut(s) 38, 114, 360, 480, 734, 858, 926, 1349, 1593
Sau3AI GATC 8 cut(s) 220, 225, 352, 403, 697, 824, 977, 1054
Sau96I GGNCC 2 cut(s) 1386, 1693
SchI GAGTC 5 cut(s) 101, 195, 398, 1136, 1653
ScrFI CCNGG 3 cut(s) 134, 656, 1523
SduI GDGCHC 4 cut(s) 579, 961, 992, 1206
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 6 cut(s) 262, 466, 637, 745, 912, 1428
SfcI CTRYAG 2 cut(s) 181, 903
SfuI TTCGAA 1 cut(s) 1252
SinI GGWCC 1 cut(s) 1386
SmlI CTYRAG 5 cut(s) 491, 605, 884, 960, 1661
SmoI CTYRAG 5 cut(s) 491, 605, 884, 960, 1661
SpeI ACTAGT 1 cut(s) 341
SphI GCATGC 1 cut(s) 1348
SsiI CCGC 2 cut(s) 113, 860
SspMI CTAG 2 cut(s) 342, 1277
SstI GAGCTC 1 cut(s) 961
StyD4I CCNGG 3 cut(s) 132, 654, 1521
StyI CCWWGG 1 cut(s) 793
TaaI ACNGT 3 cut(s) 68, 971, 1192
TaiI ACGT 3 cut(s) 490, 667, 1574
TaqI TCGA 4 cut(s) 778, 1048, 1252, 1407
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 4 cut(s) 77, 148, 305, 1446
TscAI CASTG 4 cut(s) 73, 976, 1195, 1421
TseFI GTSAC 4 cut(s) 3, 68, 412, 542
TseI GCWGC 8 cut(s) 37, 359, 479, 733, 857, 925, 1348, 1592
Tsp45I GTSAC 4 cut(s) 3, 68, 412, 542
TspDTI ATGAA 6 cut(s) 180, 373, 384, 423, 945, 1451
TspGWI ACGGA 2 cut(s) 550, 1487
TspRI CASTG 4 cut(s) 73, 976, 1195, 1421
Vha464I CTTAAG 1 cut(s) 884
VpaK11BI GGWCC 1 cut(s) 1386
VspI ATTAAT 1 cut(s) 285
XagI CCTNNNNNAGG 3 cut(s) 996, 1520, 1688
XapI RAATTY 4 cut(s) 424, 710, 892, 1633
XceI RCATGY 3 cut(s) 205, 693, 1348
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XspI CTAG 2 cut(s) 342, 1277
Zsp2I ATGCAT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.