FvH4_5g02720

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
1633105 .. 1636244
3140 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02720.t1

Sequence Viewer

Length: 1380 bp
ATGATGATGAGGAGAGGAGTGAACGGCGGAGATGGGAACAACGCTTTGGATACTATAAACGCTGCTGCCTCGGCGATCGCGGCGGCCGAGAGCCGTGTTCCTCAAGCCACCGTTCAGAAGAGAAGATGGGCCAAAGGCTGGGGTGTCTATTGGTGTTTCGGCTTTCAAAGACATAGGAAGAGAATTGGACATGCTGTCATTCTCCCAGAAACAACTTCTCCTGGACACAATGACCCTAGAGCTGAAAATCTTACCCAAGCATCATCCATTGTACTTCCCTTTGCTGCACCTCCGTCCTCTCCTGCTTCGTTTCTTCAGTCAGAACCTCCTTCTGCCATGCAATCACCAGGGTTTAACTTTTCTCTATCTGCTAGTATGTATTCCCCCGGGCCTTCATCAATATTTGCCATCGGTCCTTATGCTCACGAAACCCAGTTGGTCTCACCTCCTGTTTTCTCAACCTTTACTACTGAACCATCAACTGCTCCATTCACTCCTCCTGCCGAGTCTGTTCACTTGACTAGACCTTCATCACCTGAGGTTCCATTTGCTCAGCTGCTTGATTCTAACTTTAGGTTTGGTGAAGGTGGCCAGAGATACCCATTATCTCACTATGAATTTCAGTCTTACCAATGGTACCCTGGAAGCCCAGTTGGTCAGCTTATATCACCAAGCTCAGGCATATCAGGCTCTGGTACTTCTTCTCCTTTCCTTGACAGTGAGTTTGCCTCTGGTGGTCATCACTTCCTGGAGTTCCGAACAGGTGAAGCTCCTAAAGTCTTGAACCTTGATATTCTCTTCACGCGTGATTGGGGTTCAAGATTATGTTCTGGTTCTGTGACTCCTGATGCTGCAAAGTCTACATCGTCTGAGGGTTTTACTCTGAAGCCGTATACCCCTGAAGGTGTATTAAATGCACGATCAAACAGTAGACGTAGAAATGATGGTGCTTCCATTGGTCATAGAGTCTCATTTGAGTTGAGTGCTGAAGAAGTTGTAAGATGTGTAGAAAAGAAGCCAGTAGCATTAGCTGAAGCTGTATCAACATCTCTACAAAGTGCAGAAAAGGCCGAAAGAGAAGAAGGTCCTAATCAAGAAGTGAGCAGTAGTCATGAGTGCCCTGTTGTTGACACATCCAATGATTCATCAGAAAAGGCTGTAGGAGGAGACGCGGAGGAGTTATCCTACCGGTATCAGAAGGAGCGATCCATCACACTTGGTTCTGCTAAGGAATTCAATTTCGACAATGCAGATGGAGGAGATTCTGGCACCTCTAGTATCAGCACCGACTGGTGGGCGAATGAGAAGGTTGTTTTGAAGGAGAATGGGGAATCAAAGAATTGGTCTTTCTTCCCTATGATACAACCGGGCATGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

460

Amino Acids

49.52

Weight (kDa)

5.48

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015618)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 636
AccB1I GGYRCC 2 cut(s) 636, 1268
AccB7I CCANNNNNTGG 1 cut(s) 138
AccI GTMKAC 3 cut(s) 860, 893, 931
AccII CGCG 3 cut(s) 80, 805, 1172
AciI CCGC 4 cut(s) 27, 80, 83, 1172
AclWI GGATC 1 cut(s) 1200
AcoI YGGCCR 2 cut(s) 84, 589
AcsI RAATTY 2 cut(s) 617, 1232
AcuI CTGAAG 5 cut(s) 299, 905, 921, 1008, 1053
AfaI GTAC 3 cut(s) 273, 638, 697
AfiI CCNNNNNNNGG 3 cut(s) 138, 677, 1293
AflIII ACRYGT 1 cut(s) 803
AgeI ACCGGT 1 cut(s) 1188
AgsI TTSAA 5 cut(s) 167, 784, 819, 1237, 1318
AhdI GACNNNNNGTC 1 cut(s) 194
AjnI CCWGG 4 cut(s) 220, 346, 640, 747
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 7 cut(s) 242, 556, 661, 675, 770, 1031, 1037
AluI AGCT 7 cut(s) 242, 556, 661, 675, 770, 1031, 1037
Alw26I GTCTC 3 cut(s) 445, 973, 1161
AlwI GGATC 1 cut(s) 1200
AlwNI CAGNNNCTG 1 cut(s) 692
Ama87I CYCGRG 1 cut(s) 386
AoxI GGCC 5 cut(s) 84, 129, 389, 589, 1068
ApeKI GCWGC 5 cut(s) 62, 65, 284, 556, 851
ApoI RAATTY 2 cut(s) 617, 1232
ArsI GACNNNNNNTTYG 4 cut(s) 707, 739, 1328, 1360
AsiGI ACCGGT 1 cut(s) 1188
AsiSI GCGATCGC 1 cut(s) 78
Asp718I GGTACC 1 cut(s) 636
AspS9I GGNCC 4 cut(s) 129, 389, 413, 1085
AsuC2I CCSGG 3 cut(s) 387, 388, 1368
AsuHPI GGTGA 6 cut(s) 336, 435, 525, 593, 660, 776
AvaI CYCGRG 1 cut(s) 386
AvaII GGWCC 2 cut(s) 413, 1085
AxyI CCTNAGG 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 1121
BalI TGGCCA 1 cut(s) 591
BanI GGYRCC 2 cut(s) 636, 1268
BbvI GCAGC 5 cut(s) 49, 52, 271, 543, 838
BccI CCATC 7 cut(s) 26, 120, 416, 484, 938, 1217, 1247
BceAI ACGGC 3 cut(s) 40, 78, 874
BciT130I CCWGG 4 cut(s) 222, 348, 642, 749
BciVI GTATCC 1 cut(s) 43
BcnI CCSGG 3 cut(s) 387, 388, 1368
BcoDI GTCTC 3 cut(s) 445, 973, 1161
BfaI CTAG 4 cut(s) 237, 372, 522, 1275
BfmI CTRYAG 1 cut(s) 1158
BfuI GTATCC 1 cut(s) 43
BisI GCNGC 7 cut(s) 63, 66, 81, 84, 285, 557, 852
BlpI GCTNAGC 1 cut(s) 552
BlsI GCNGC 7 cut(s) 64, 67, 82, 85, 286, 558, 853
Bme1390I CCNGG 7 cut(s) 222, 348, 387, 388, 642, 749, 1368
Bme18I GGWCC 2 cut(s) 413, 1085
BmeRI GACNNNNNGTC 1 cut(s) 194
BmeT110I CYCGRG 1 cut(s) 386
BmgT120I GGNCC 4 cut(s) 129, 389, 413, 1085
BmiI GGNNCC 3 cut(s) 543, 638, 1270
BmrFI CCNGG 7 cut(s) 222, 348, 387, 388, 642, 749, 1368
BmrI ACTGGG 2 cut(s) 427, 644
BmsI GCATC 2 cut(s) 269, 838
BmuI ACTGGG 2 cut(s) 427, 644
BplI GAGNNNNNCTC 2 cut(s) 713, 745
BpmI CTGGAG 1 cut(s) 770
Bpu10I CCTNAGC 2 cut(s) 676, 1227
Bpu1102I GCTNAGC 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 87
BpuMI CCSGG 3 cut(s) 387, 388, 1368
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 5 cut(s) 69, 347, 385, 386, 640
BsaWI WCCGGW 1 cut(s) 1188
BsaXI ACNNNNNCTCC 4 cut(s) 202, 232, 688, 718
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 677, 1293
Bse118I RCCGGY 1 cut(s) 1188
Bse1I ACTGG 4 cut(s) 433, 650, 1019, 1295
Bse21I CCTNAGG 1 cut(s) 537
BseBI CCWGG 4 cut(s) 222, 348, 642, 749
BseDI CCNNGG 5 cut(s) 69, 347, 385, 386, 640
BseGI GGATG 2 cut(s) 263, 1133
BseLI CCNNNNNNNGG 3 cut(s) 138, 677, 1293
BseMII CTCAG 4 cut(s) 528, 566, 690, 861
BseNI ACTGG 4 cut(s) 433, 650, 1019, 1295
BseRI GAGGAG 6 cut(s) 25, 30, 486, 1179, 1190, 1272
BseSI GKGCMC 1 cut(s) 1121
BseX3I CGGCCG 1 cut(s) 84
BseXI GCAGC 5 cut(s) 49, 52, 271, 543, 838
BseYI CCCAGC 1 cut(s) 138
BsgI GTGCAG 2 cut(s) 270, 1080
Bsh1236I CGCG 3 cut(s) 80, 805, 1172
Bsh1285I CGRYCG 2 cut(s) 78, 87
BshFI GGCC 5 cut(s) 86, 131, 391, 591, 1070
BshNI GGYRCC 2 cut(s) 636, 1268
BshTI ACCGGT 1 cut(s) 1188
BsiEI CGRYCG 2 cut(s) 78, 87
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 3 cut(s) 387, 1189, 1367
BslI CCNNNNNNNGG 3 cut(s) 138, 677, 1293
BsmAI GTCTC 3 cut(s) 445, 973, 1161
BsmBI CGTCTC 1 cut(s) 1161
BsnI GGCC 5 cut(s) 86, 131, 391, 591, 1070
Bso31I GGTCTC 1 cut(s) 445
BsoBI CYCGRG 1 cut(s) 386
Bsp1286I GDGCHC 1 cut(s) 1121
Bsp143I GATC 3 cut(s) 75, 920, 1205
Bsp1720I GCTNAGC 1 cut(s) 552
BspACI CCGC 4 cut(s) 27, 80, 83, 1172
BspANI GGCC 5 cut(s) 86, 131, 391, 591, 1070
BspCNI CTCAG 4 cut(s) 529, 565, 689, 862
BspFNI CGCG 3 cut(s) 80, 805, 1172
BspHI TCATGA 1 cut(s) 1111
BspLI GGNNCC 3 cut(s) 543, 638, 1270
BspPI GGATC 1 cut(s) 1200
BspT107I GGYRCC 2 cut(s) 636, 1268
BspTNI GGTCTC 1 cut(s) 445
BsrFI RCCGGY 1 cut(s) 1188
BsrI ACTGG 4 cut(s) 433, 650, 1019, 1295
BssAI RCCGGY 1 cut(s) 1188
BssECI CCNNGG 5 cut(s) 69, 347, 385, 386, 640
BssMI GATC 3 cut(s) 75, 920, 1205
BssNAI GTATAC 1 cut(s) 894
Bst1107I GTATAC 1 cut(s) 894
Bst2UI CCWGG 4 cut(s) 222, 348, 642, 749
Bst4CI ACNGT 3 cut(s) 112, 719, 929
Bst6I CTCTTC 3 cut(s) 113, 173, 803
BstDEI CTNAG 5 cut(s) 537, 552, 676, 870, 1227
BstF5I GGATG 2 cut(s) 263, 1133
BstFNI CGCG 3 cut(s) 80, 805, 1172
BstKTI GATC 3 cut(s) 78, 923, 1208
BstMAI GTCTC 3 cut(s) 445, 973, 1161
BstMBI GATC 3 cut(s) 75, 920, 1205
BstMCI CGRYCG 2 cut(s) 78, 87
BstMWI GCNNNNNNNGC 4 cut(s) 71, 80, 687, 1067
BstNI CCWGG 4 cut(s) 222, 348, 642, 749
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 7 cut(s) 220, 346, 385, 386, 640, 747, 1366
BstSFI CTRYAG 1 cut(s) 1158
BstSLI GKGCMC 1 cut(s) 1121
BstUI CGCG 3 cut(s) 80, 805, 1172
BstV1I GCAGC 5 cut(s) 49, 52, 271, 543, 838
BstZ17I GTATAC 1 cut(s) 894
BstZI CGGCCG 1 cut(s) 84
Bsu36I CCTNAGG 1 cut(s) 537
BsuI GTATCC 1 cut(s) 43
BsuRI GGCC 5 cut(s) 86, 131, 391, 591, 1070
BtsCI GGATG 2 cut(s) 263, 1133
BtsIMutI CAGTG 1 cut(s) 724
CaiI CAGNNNCTG 1 cut(s) 692
CciI TCATGA 1 cut(s) 1111
Cfr10I RCCGGY 1 cut(s) 1188
Cfr13I GGNCC 4 cut(s) 129, 389, 413, 1085
Cfr9I CCCGGG 1 cut(s) 386
CseI GACGC 1 cut(s) 1178
Csp6I GTAC 3 cut(s) 272, 637, 696
CspAI ACCGGT 1 cut(s) 1188
CviAII CATG 4 cut(s) 191, 337, 1112, 1372
CviQI GTAC 3 cut(s) 272, 637, 696
DdeI CTNAG 5 cut(s) 537, 552, 676, 870, 1227
DpnI GATC 3 cut(s) 77, 922, 1207
DpnII GATC 3 cut(s) 75, 920, 1205
DriI GACNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 2 cut(s) 84, 589
EagI CGGCCG 1 cut(s) 84
Eam1104I CTCTTC 3 cut(s) 113, 173, 803
Eam1105I GACNNNNNGTC 1 cut(s) 194
EarI CTCTTC 3 cut(s) 113, 173, 803
EciI GGCGGA 1 cut(s) 42
EclXI CGGCCG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 445
Eco47I GGWCC 2 cut(s) 413, 1085
Eco52I CGGCCG 1 cut(s) 84
Eco57I CTGAAG 5 cut(s) 299, 905, 921, 1008, 1053
Eco81I CCTNAGG 1 cut(s) 537
Eco88I CYCGRG 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 1085
EcoRI GAATTC 1 cut(s) 1232
EcoRII CCWGG 4 cut(s) 220, 346, 640, 747
Esp3I CGTCTC 1 cut(s) 1161
FaeI CATG 4 cut(s) 194, 340, 1115, 1375
FatI CATG 4 cut(s) 190, 336, 1111, 1371
FblI GTMKAC 3 cut(s) 860, 893, 931
Fnu4HI GCNGC 7 cut(s) 63, 66, 81, 84, 285, 557, 852
FokI GGATG 2 cut(s) 250, 1120
Fsp4HI GCNGC 7 cut(s) 63, 66, 81, 84, 285, 557, 852
FspBI CTAG 4 cut(s) 237, 372, 522, 1275
GluI GCNGC 7 cut(s) 63, 66, 81, 84, 285, 557, 852
GsaI CCCAGC 1 cut(s) 142
GsuI CTGGAG 1 cut(s) 770
HaeIII GGCC 5 cut(s) 86, 131, 391, 591, 1070
HapII CCGG 3 cut(s) 387, 1189, 1367
HgaI GACGC 1 cut(s) 1178
Hin1II CATG 4 cut(s) 194, 340, 1115, 1375
HincII GTYRAC 1 cut(s) 1129
HindII GTYRAC 1 cut(s) 1129
HinfI GANTC 7 cut(s) 506, 563, 841, 966, 1142, 1262, 1331
HpaII CCGG 3 cut(s) 387, 1189, 1367
HphI GGTGA 6 cut(s) 336, 435, 525, 593, 660, 776
Hpy166II GTNNAC 6 cut(s) 22, 514, 861, 894, 932, 1129
Hpy188I TCNGA 7 cut(s) 117, 322, 758, 871, 885, 1150, 1197
Hpy188III TCNNGA 6 cut(s) 425, 781, 819, 845, 1094, 1112
Hpy8I GTNNAC 6 cut(s) 22, 514, 861, 894, 932, 1129
HpyAV CCTTC 9 cut(s) 339, 402, 537, 578, 896, 1076, 1192, 1300, 1312
HpyCH4III ACNGT 3 cut(s) 112, 719, 929
HpyCH4IV ACGT 1 cut(s) 934
HpyCH4V TGCA 6 cut(s) 287, 340, 854, 917, 1061, 1250
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 80, 687, 1067
HpyF3I CTNAG 5 cut(s) 537, 552, 676, 870, 1227
HpySE526I ACGT 1 cut(s) 934
Hsp92II CATG 4 cut(s) 194, 340, 1115, 1375
KpnI GGTACC 1 cut(s) 640
Kzo9I GATC 3 cut(s) 75, 920, 1205
LmnI GCTCC 3 cut(s) 490, 775, 1201
Lsp1109I GCAGC 5 cut(s) 49, 52, 271, 543, 838
LweI GCATC 2 cut(s) 269, 838
MaeI CTAG 4 cut(s) 237, 372, 522, 1275
MaeII ACGT 1 cut(s) 934
MaeIII GTNAC 1 cut(s) 838
MalI GATC 3 cut(s) 77, 922, 1207
MboI GATC 3 cut(s) 75, 920, 1205
MboII GAAGA 9 cut(s) 130, 135, 190, 305, 693, 790, 1001, 1091, 1342
MhlI GDGCHC 1 cut(s) 1121
MlsI TGGCCA 1 cut(s) 591
MluCI AATT 5 cut(s) 183, 617, 1232, 1237, 1339
MluI ACGCGT 1 cut(s) 803
MluNI TGGCCA 1 cut(s) 591
MlyI GAGTC 3 cut(s) 515, 835, 975
Mox20I TGGCCA 1 cut(s) 591
MscI TGGCCA 1 cut(s) 591
MseI TTAA 3 cut(s) 354, 911, 1378
Msp20I TGGCCA 1 cut(s) 591
MspA1I CMGCKG 1 cut(s) 556
MspI CCGG 3 cut(s) 387, 1189, 1367
MspR9I CCNGG 7 cut(s) 222, 348, 387, 388, 642, 749, 1368
MvaI CCWGG 4 cut(s) 222, 348, 642, 749
MvnI CGCG 3 cut(s) 80, 805, 1172
MwoI GCNNNNNNNGC 4 cut(s) 71, 80, 687, 1067
NciI CCSGG 3 cut(s) 387, 388, 1368
NdeII GATC 3 cut(s) 75, 920, 1205
NlaIII CATG 4 cut(s) 194, 340, 1115, 1375
NlaIV GGNNCC 3 cut(s) 543, 638, 1270
NmeAIII GCCGAG 3 cut(s) 50, 112, 529
NmuCI GTSAC 1 cut(s) 838
NspI RCATGY 1 cut(s) 194
PagI TCATGA 1 cut(s) 1111
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 4 cut(s) 563, 1142, 1262, 1331
PflMI CCANNNNNTGG 1 cut(s) 138
PfoI TCCNGGA 2 cut(s) 220, 747
PinAI ACCGGT 1 cut(s) 1188
PkrI GCNGC 7 cut(s) 64, 67, 82, 85, 286, 558, 853
Ple19I CGATCG 1 cut(s) 78
PleI GAGTC 3 cut(s) 514, 835, 974
PpsI GAGTC 3 cut(s) 514, 835, 974
PpuMI RGGWCCY 1 cut(s) 1085
Psp5II RGGWCCY 1 cut(s) 1085
Psp6I CCWGG 4 cut(s) 220, 346, 640, 747
PspFI CCCAGC 1 cut(s) 138
PspGI CCWGG 4 cut(s) 220, 346, 640, 747
PspN4I GGNNCC 3 cut(s) 543, 638, 1270
PspPI GGNCC 4 cut(s) 129, 389, 413, 1085
PspPPI RGGWCCY 1 cut(s) 1085
PstNI CAGNNNCTG 1 cut(s) 692
PvuI CGATCG 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 556
RgaI GCGATCGC 1 cut(s) 78
RsaI GTAC 3 cut(s) 273, 638, 697
RsaNI GTAC 3 cut(s) 272, 637, 696
SaqAI TTAA 3 cut(s) 354, 911, 1378
SatI GCNGC 7 cut(s) 63, 66, 81, 84, 285, 557, 852
Sau3AI GATC 3 cut(s) 75, 920, 1205
Sau96I GGNCC 4 cut(s) 129, 389, 413, 1085
SchI GAGTC 3 cut(s) 515, 835, 975
ScrFI CCNGG 7 cut(s) 222, 348, 387, 388, 642, 749, 1368
SduI GDGCHC 1 cut(s) 1121
SfaAI GCGATCGC 1 cut(s) 78
SfaNI GCATC 2 cut(s) 269, 838
SfcI CTRYAG 1 cut(s) 1158
SgfI GCGATCGC 1 cut(s) 78
SinI GGWCC 2 cut(s) 413, 1085
SmaI CCCGGG 1 cut(s) 388
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 5 cut(s) 183, 617, 1232, 1237, 1339
SsiI CCGC 4 cut(s) 27, 80, 83, 1172
SspI AATATT 1 cut(s) 402
SspMI CTAG 4 cut(s) 237, 372, 522, 1275
StyD4I CCNGG 7 cut(s) 220, 346, 385, 386, 640, 747, 1366
TaaI ACNGT 3 cut(s) 112, 719, 929
TaiI ACGT 1 cut(s) 937
TaqI TCGA 1 cut(s) 1242
TaqII GACCGA 1 cut(s) 401
TasI AATT 5 cut(s) 183, 617, 1232, 1237, 1339
TatI WGTACW 1 cut(s) 271
TauI GCSGC 2 cut(s) 83, 86
TfiI GAWTC 4 cut(s) 563, 1142, 1262, 1331
Tru1I TTAA 3 cut(s) 354, 911, 1378
Tru9I TTAA 3 cut(s) 354, 911, 1378
TscAI CASTG 1 cut(s) 724
TseFI GTSAC 1 cut(s) 838
TseI GCWGC 5 cut(s) 62, 65, 284, 556, 851
Tsp45I GTSAC 1 cut(s) 838
TspDTI ATGAA 4 cut(s) 384, 519, 630, 1134
TspGWI ACGGA 1 cut(s) 282
TspMI CCCGGG 1 cut(s) 386
TspRI CASTG 1 cut(s) 724
Van91I CCANNNNNTGG 1 cut(s) 138
VpaK11BI GGWCC 2 cut(s) 413, 1085
XapI RAATTY 2 cut(s) 617, 1232
XceI RCATGY 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
XmaI CCCGGG 1 cut(s) 386
XmiI GTMKAC 3 cut(s) 860, 893, 931
XspI CTAG 4 cut(s) 237, 372, 522, 1275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.