Rroxscaffold_3G00258590

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015618
Physical Location & Seq
Reverse (-)
53064023 .. 53066685
2663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00258590.1

Sequence Viewer

Length: 1254 bp
ATGATGATGGTGAGAGGAGTGAACGGCGGAGAGTCCAGAGGTGGGAGCAACGCTTTGGATACTATCAACGCAGCTGCTTCGGCGATCGCGGCGGCCGAGAGCCGTGTTCCTCAAGCCACCGTGCAGTTGACTTGCTTTAAAAGAGAAGATGGGCCAAAGGCTGGAGTGTCTATTGGTGTTTCGGCTTTCAAAGACATAGGAAGAGAATTGGACATGCTGTCATTCTCCCAGAAACAAGTTCCTCCGGAGTATGTACTCCCCGGGCCTGCATCGATATTTGCCATTGGTCCTTATGCTCACGAAACCCAGTTGGTCTCACCTCCTGTTTTCTCAACCTTTACTACTGAACCGTCAACTGCTCCATTCACTCCTCCTGCTGAGTCTGTTCACTTGACTACACCTTCGTCACCTGAGGTTCCATTTGCTCAGCTGCTTGATCCTAACTTTAGGAATGGTGAAGGTGGTCAGAGATACCCATTATCTCACTATGAATTTCAGTCTTACCAACTGTACCCTGGAAGCCCAGTTTGTCAGCTTATATCACCAAGCTCAGGTATCTCAGGCTCTGGTACTTCTTCTCCTTTCCTTGACAGTGAGTTTGCTTCTGGTGGTCGTCACTTCCTGGAGTTCCGAACAGGTGAAGCTCCTAAACTCTTGAACCTTGATATTCTCTTCACCCGTGATTGGGGTTCAAGACTATGTTCTGGTTCTGTGACTCCTGATGCTGCAAAGTCTACATCTTCCGATGGTTTTACTCTAAAACCGCATACTCCTGAAGGTGTATTAAATGCACGATCAAACAGTCGACGCAGAAATGATGATGTTTCCATCGGTCATAGAGTCTCGTTTGAGTTAAGTGATGAAGAAGTTGTAAGATGTGTGGACAAGAAGCCAGTAGCATTAGCTGAAGCTGTATCAACATCTCTACAAAGTACAGAAAAGGCTGAAGGAGAAGAAGGTCCTAGTCAAGAAGTGAGTAGTAGTCATAAGTGCCCTGTTGTTGACACATCCAATGAATCATCAGAAAAGGCTGTACGAGGAGATGGGGAGGAGGCATTCCACCGGCATCAGAAGGAGCGATCCATCACACTTGGTTCTGCTAAGGAATTCAATTTCGACAATGCAGATGGAGGAGATTCTGGCACCTCTAATATCAGCACTGACTGGTGGGCGAATGAGAAGGTTGTTTCGAACGAGAATGGGCAATCAAAGAATTGGTCTTTCTTCCCTATGATACAGCCGGGCGTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

417

Amino Acids

44.69

Weight (kDa)

5.07

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015618)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02720
malus_domestica MD06G1086300.v1.1 MD14G1107500.v1.1
prunus_persica Prupe.5G102900_v2.0.a1
pyrus_communis pycom06g08290 pycom14g10250
rosa_chinensis RchiOBHm_Chr7g0197211
rosa_laevigata RLG00000003951
rosa_multiflora Rmu_ssc0000465.1_g000014
rosa_roxburghii Rroxscaffold_3G00258590
rosa_rugosa Rorug07G0038700
rosa_samantha Rh7AG163300 Rh7BG165300 Rh7CG171300 Rh7DG164700
rosa_wichuraiana Rw7G014260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1142
AccB7I CCANNNNNTGG 1 cut(s) 161
AccI GTMKAC 2 cut(s) 734, 805
AccII CGCG 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 4 cut(s) 27, 89, 92, 764
AclWI GGATC 2 cut(s) 431, 1074
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 2 cut(s) 491, 1106
AcuI CTGAAG 3 cut(s) 795, 927, 966
AfaI GTAC 5 cut(s) 255, 512, 571, 934, 1035
AfiI CCNNNNNNNGG 5 cut(s) 42, 161, 551, 684, 685
AgsI TTSAA 4 cut(s) 190, 658, 693, 1111
AhdI GACNNNNNGTC 1 cut(s) 217
AjnI CCWGG 2 cut(s) 514, 621
AluBI AGCT 7 cut(s) 74, 430, 535, 549, 644, 905, 911
AluI AGCT 7 cut(s) 74, 430, 535, 549, 644, 905, 911
Alw26I GTCTC 2 cut(s) 319, 847
AlwI GGATC 2 cut(s) 431, 1074
AlwNI CAGNNNCTG 1 cut(s) 566
Ama87I CYCGRG 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 3 cut(s) 93, 152, 263
ApeKI GCWGC 4 cut(s) 71, 74, 430, 725
ApoI RAATTY 2 cut(s) 491, 1106
ArsI GACNNNNNNTTYG 6 cut(s) 385, 417, 581, 613, 1202, 1234
AsiSI GCGATCGC 1 cut(s) 87
AspS9I GGNCC 4 cut(s) 152, 263, 287, 959
AsuC2I CCSGG 3 cut(s) 261, 262, 1242
AsuHPI GGTGA 7 cut(s) 22, 309, 399, 467, 534, 650, 667
AsuII TTCGAA 1 cut(s) 1190
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 2 cut(s) 287, 959
AxyI CCTNAGG 1 cut(s) 411
BaeGI GKGCMC 1 cut(s) 995
BanI GGYRCC 1 cut(s) 1142
BbvI GCAGC 4 cut(s) 61, 83, 417, 712
BccI CCATC 6 cut(s) 143, 740, 836, 1037, 1091, 1121
BceAI ACGGC 2 cut(s) 40, 87
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 2 cut(s) 516, 623
BciVI GTATCC 1 cut(s) 52
BcnI CCSGG 3 cut(s) 261, 262, 1242
BcoDI GTCTC 2 cut(s) 319, 847
BfaI CTAG 1 cut(s) 963
BfuI GTATCC 1 cut(s) 52
BisI GCNGC 6 cut(s) 72, 75, 90, 93, 431, 726
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 6 cut(s) 73, 76, 91, 94, 432, 727
Bme1390I CCNGG 5 cut(s) 261, 262, 516, 623, 1242
Bme18I GGWCC 2 cut(s) 287, 959
BmeRI GACNNNNNGTC 1 cut(s) 217
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 4 cut(s) 152, 263, 287, 959
BmiI GGNNCC 2 cut(s) 417, 1144
BmrFI CCNGG 5 cut(s) 261, 262, 516, 623, 1242
BmrI ACTGGG 2 cut(s) 301, 518
BmsI GCATC 3 cut(s) 278, 712, 1075
BmuI ACTGGG 2 cut(s) 301, 518
BpmI CTGGAG 2 cut(s) 183, 644
Bpu10I CCTNAGC 2 cut(s) 550, 1101
Bpu1102I GCTNAGC 1 cut(s) 426
Bpu14I TTCGAA 1 cut(s) 1190
BpuEI CTTGAG 1 cut(s) 96
BpuMI CCSGG 3 cut(s) 261, 262, 1242
Bsa29I ATCGAT 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 3 cut(s) 259, 260, 514
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 562, 592
Bsc4I CCNNNNNNNGG 5 cut(s) 42, 161, 551, 684, 685
Bse118I RCCGGY 1 cut(s) 1062
Bse1I ACTGG 4 cut(s) 307, 524, 893, 1169
Bse21I CCTNAGG 1 cut(s) 411
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 2 cut(s) 516, 623
BseCI ATCGAT 1 cut(s) 272
BseDI CCNNGG 3 cut(s) 259, 260, 514
BseGI GGATG 1 cut(s) 1007
BseLI CCNNNNNNNGG 5 cut(s) 42, 161, 551, 684, 685
BseMII CTCAG 5 cut(s) 369, 402, 440, 564, 573
BseNI ACTGG 4 cut(s) 307, 524, 893, 1169
BseRI GAGGAG 5 cut(s) 30, 360, 1053, 1064, 1146
BseSI GKGCMC 1 cut(s) 995
BseX3I CGGCCG 1 cut(s) 93
BseXI GCAGC 4 cut(s) 61, 83, 417, 712
BsgI GTGCAG 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 89
Bsh1285I CGRYCG 2 cut(s) 87, 96
BshFI GGCC 3 cut(s) 95, 154, 265
BshNI GGYRCC 1 cut(s) 1142
BshVI ATCGAT 1 cut(s) 272
BsiEI CGRYCG 2 cut(s) 87, 96
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 4 cut(s) 245, 261, 1063, 1241
BslI CCNNNNNNNGG 5 cut(s) 42, 161, 551, 684, 685
BsmAI GTCTC 2 cut(s) 319, 847
BsmI GAATGC 1 cut(s) 1055
BsnI GGCC 3 cut(s) 95, 154, 265
Bso31I GGTCTC 1 cut(s) 319
BsoBI CYCGRG 1 cut(s) 260
Bsp119I TTCGAA 1 cut(s) 1190
Bsp1286I GDGCHC 1 cut(s) 995
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 4 cut(s) 84, 436, 794, 1079
Bsp1720I GCTNAGC 1 cut(s) 426
BspACI CCGC 4 cut(s) 27, 89, 92, 764
BspANI GGCC 3 cut(s) 95, 154, 265
BspCNI CTCAG 5 cut(s) 370, 403, 439, 563, 572
BspDI ATCGAT 1 cut(s) 272
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 2 cut(s) 417, 1144
BspPI GGATC 2 cut(s) 431, 1074
BspT104I TTCGAA 1 cut(s) 1190
BspT107I GGYRCC 1 cut(s) 1142
BspTNI GGTCTC 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 1062
BsrI ACTGG 4 cut(s) 307, 524, 893, 1169
BssAI RCCGGY 1 cut(s) 1062
BssECI CCNNGG 3 cut(s) 259, 260, 514
BssMI GATC 4 cut(s) 84, 436, 794, 1079
Bst2UI CCWGG 2 cut(s) 516, 623
Bst4CI ACNGT 5 cut(s) 121, 351, 510, 593, 803
Bst6I CTCTTC 2 cut(s) 196, 677
BstBI TTCGAA 1 cut(s) 1190
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 6 cut(s) 378, 411, 426, 550, 559, 1101
BstF5I GGATG 1 cut(s) 1007
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 4 cut(s) 87, 439, 797, 1082
BstMAI GTCTC 2 cut(s) 319, 847
BstMBI GATC 4 cut(s) 84, 436, 794, 1079
BstMCI CGRYCG 2 cut(s) 87, 96
BstMWI GCNNNNNNNGC 2 cut(s) 80, 89
BstNI CCWGG 2 cut(s) 516, 623
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 5 cut(s) 259, 260, 514, 621, 1240
BstSLI GKGCMC 1 cut(s) 995
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 4 cut(s) 61, 83, 417, 712
BstZI CGGCCG 1 cut(s) 93
Bsu15I ATCGAT 1 cut(s) 272
Bsu36I CCTNAGG 1 cut(s) 411
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 3 cut(s) 95, 154, 265
BsuTUI ATCGAT 1 cut(s) 272
BtsCI GGATG 1 cut(s) 1007
BtsIMutI CAGTG 2 cut(s) 598, 1158
Cac8I GCNNGC 1 cut(s) 267
CaiI CAGNNNCTG 1 cut(s) 566
Cfr10I RCCGGY 1 cut(s) 1062
Cfr13I GGNCC 4 cut(s) 152, 263, 287, 959
Cfr9I CCCGGG 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 272
CseI GACGC 1 cut(s) 816
Csp6I GTAC 5 cut(s) 254, 511, 570, 933, 1034
CviAII CATG 1 cut(s) 214
CviQI GTAC 5 cut(s) 254, 511, 570, 933, 1034
DdeI CTNAG 6 cut(s) 378, 411, 426, 550, 559, 1101
DpnI GATC 4 cut(s) 86, 438, 796, 1081
DpnII GATC 4 cut(s) 84, 436, 794, 1079
DraI TTTAAA 1 cut(s) 139
DriI GACNNNNNGTC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 93
EagI CGGCCG 1 cut(s) 93
Eam1104I CTCTTC 2 cut(s) 196, 677
Eam1105I GACNNNNNGTC 1 cut(s) 217
EarI CTCTTC 2 cut(s) 196, 677
EciI GGCGGA 1 cut(s) 42
EclXI CGGCCG 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 287, 959
Eco52I CGGCCG 1 cut(s) 93
Eco57I CTGAAG 3 cut(s) 795, 927, 966
Eco81I CCTNAGG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 959
EcoRI GAATTC 1 cut(s) 1106
EcoRII CCWGG 2 cut(s) 514, 621
FaeI CATG 1 cut(s) 217
FatI CATG 1 cut(s) 213
FblI GTMKAC 2 cut(s) 734, 805
Fnu4HI GCNGC 6 cut(s) 72, 75, 90, 93, 431, 726
FokI GGATG 1 cut(s) 994
Fsp4HI GCNGC 6 cut(s) 72, 75, 90, 93, 431, 726
FspBI CTAG 1 cut(s) 963
GluI GCNGC 6 cut(s) 72, 75, 90, 93, 431, 726
GsuI CTGGAG 2 cut(s) 183, 644
HaeIII GGCC 3 cut(s) 95, 154, 265
HapII CCGG 4 cut(s) 245, 261, 1063, 1241
HgaI GACGC 1 cut(s) 816
Hin1II CATG 1 cut(s) 217
HincII GTYRAC 4 cut(s) 129, 354, 806, 1003
HindII GTYRAC 4 cut(s) 129, 354, 806, 1003
HinfI GANTC 6 cut(s) 32, 380, 715, 840, 1016, 1136
HpaII CCGG 4 cut(s) 245, 261, 1063, 1241
HphI GGTGA 7 cut(s) 22, 309, 399, 467, 534, 650, 667
Hpy166II GTNNAC 8 cut(s) 22, 129, 354, 388, 735, 806, 883, 1003
Hpy188I TCNGA 5 cut(s) 468, 632, 745, 1024, 1071
Hpy188III TCNNGA 8 cut(s) 36, 245, 299, 655, 693, 719, 773, 968
Hpy8I GTNNAC 8 cut(s) 22, 129, 354, 388, 735, 806, 883, 1003
Hpy99I CGWCG 1 cut(s) 810
HpyAV CCTTC 7 cut(s) 411, 452, 770, 941, 950, 1066, 1174
HpyCH4III ACNGT 5 cut(s) 121, 351, 510, 593, 803
HpyCH4V TGCA 5 cut(s) 124, 269, 728, 791, 1124
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 89
HpyF3I CTNAG 6 cut(s) 378, 411, 426, 550, 559, 1101
Hsp92II CATG 1 cut(s) 217
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 4 cut(s) 84, 436, 794, 1079
LmnI GCTCC 4 cut(s) 45, 364, 649, 1075
Lsp1109I GCAGC 4 cut(s) 61, 83, 417, 712
LweI GCATC 3 cut(s) 278, 712, 1075
MaeI CTAG 1 cut(s) 963
MaeIII GTNAC 3 cut(s) 405, 614, 712
MalI GATC 4 cut(s) 86, 438, 796, 1081
MboI GATC 4 cut(s) 84, 436, 794, 1079
MboII GAAGA 8 cut(s) 158, 213, 567, 664, 732, 875, 965, 1216
MhlI GDGCHC 1 cut(s) 995
MluCI AATT 5 cut(s) 206, 491, 1106, 1111, 1213
MlyI GAGTC 4 cut(s) 41, 389, 709, 849
MroI TCCGGA 1 cut(s) 244
MseI TTAA 4 cut(s) 138, 785, 854, 1252
MspA1I CMGCKG 2 cut(s) 74, 430
MspI CCGG 4 cut(s) 245, 261, 1063, 1241
MspR9I CCNGG 5 cut(s) 261, 262, 516, 623, 1242
Mva1269I GAATGC 1 cut(s) 1055
MvaI CCWGG 2 cut(s) 516, 623
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 80, 89
NciI CCSGG 3 cut(s) 261, 262, 1242
NdeII GATC 4 cut(s) 84, 436, 794, 1079
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 2 cut(s) 417, 1144
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 3 cut(s) 405, 614, 712
NspI RCATGY 1 cut(s) 217
NspV TTCGAA 1 cut(s) 1190
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 1055
PfeI GAWTC 2 cut(s) 1016, 1136
PflMI CCANNNNNTGG 1 cut(s) 161
PfoI TCCNGGA 1 cut(s) 621
PkrI GCNGC 6 cut(s) 73, 76, 91, 94, 432, 727
Ple19I CGATCG 1 cut(s) 87
PleI GAGTC 4 cut(s) 40, 388, 709, 848
PpsI GAGTC 4 cut(s) 40, 388, 709, 848
PpuMI RGGWCCY 1 cut(s) 959
Psp5II RGGWCCY 1 cut(s) 959
Psp6I CCWGG 2 cut(s) 514, 621
PspGI CCWGG 2 cut(s) 514, 621
PspN4I GGNNCC 2 cut(s) 417, 1144
PspPI GGNCC 4 cut(s) 152, 263, 287, 959
PspPPI RGGWCCY 1 cut(s) 959
PstNI CAGNNNCTG 1 cut(s) 566
PvuI CGATCG 1 cut(s) 87
PvuII CAGCTG 2 cut(s) 74, 430
RgaI GCGATCGC 1 cut(s) 87
RsaI GTAC 5 cut(s) 255, 512, 571, 934, 1035
RsaNI GTAC 5 cut(s) 254, 511, 570, 933, 1034
SalI GTCGAC 1 cut(s) 804
SaqAI TTAA 4 cut(s) 138, 785, 854, 1252
SatI GCNGC 6 cut(s) 72, 75, 90, 93, 431, 726
Sau3AI GATC 4 cut(s) 84, 436, 794, 1079
Sau96I GGNCC 4 cut(s) 152, 263, 287, 959
SchI GAGTC 4 cut(s) 41, 389, 709, 849
ScrFI CCNGG 5 cut(s) 261, 262, 516, 623, 1242
SduI GDGCHC 1 cut(s) 995
SfaAI GCGATCGC 1 cut(s) 87
SfaNI GCATC 3 cut(s) 278, 712, 1075
SfuI TTCGAA 1 cut(s) 1190
SgfI GCGATCGC 1 cut(s) 87
SinI GGWCC 2 cut(s) 287, 959
SmaI CCCGGG 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 5 cut(s) 206, 491, 1106, 1111, 1213
SsiI CCGC 4 cut(s) 27, 89, 92, 764
SspMI CTAG 1 cut(s) 963
StyD4I CCNGG 5 cut(s) 259, 260, 514, 621, 1240
TaaI ACNGT 5 cut(s) 121, 351, 510, 593, 803
TaqI TCGA 4 cut(s) 272, 805, 1116, 1190
TaqII GACCGA 1 cut(s) 821
TasI AATT 5 cut(s) 206, 491, 1106, 1111, 1213
TatI WGTACW 2 cut(s) 253, 932
TauI GCSGC 2 cut(s) 92, 95
TfiI GAWTC 2 cut(s) 1016, 1136
Tru1I TTAA 4 cut(s) 138, 785, 854, 1252
Tru9I TTAA 4 cut(s) 138, 785, 854, 1252
TscAI CASTG 2 cut(s) 598, 1165
TseFI GTSAC 3 cut(s) 405, 614, 712
TseI GCWGC 4 cut(s) 71, 74, 430, 725
Tsp45I GTSAC 3 cut(s) 405, 614, 712
TspDTI ATGAA 3 cut(s) 504, 876, 1029
TspMI CCCGGG 1 cut(s) 260
TspRI CASTG 2 cut(s) 598, 1165
Van91I CCANNNNNTGG 1 cut(s) 161
VpaK11BI GGWCC 2 cut(s) 287, 959
XapI RAATTY 2 cut(s) 491, 1106
XceI RCATGY 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 512
XmaI CCCGGG 1 cut(s) 260
XmiI GTMKAC 2 cut(s) 734, 805
XspI CTAG 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.